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Publications

This list of publications includes peer-review journal articles, official USGS publications series, reports and more authored by scientists in the Ecosystems Mission Area. A database of all USGS publications, with advanced search features, can be accessed at the USGS Publications Warehouse.  

Filter Total Items: 43327

Genome-wide SNP data and morphology support the distinction of two new species of Kovarikia Soleglad, Fet & Graham, 2014 endemic to California (Scorpiones, Vaejovidae) Genome-wide SNP data and morphology support the distinction of two new species of Kovarikia Soleglad, Fet & Graham, 2014 endemic to California (Scorpiones, Vaejovidae)

Morphologically conserved taxa such as scorpions represent a challenge to delimit. We recently discovered populations of scorpions in the genus Kovarikia Soleglad, Fet & Graham, 2014 on two isolated mountain ranges in southern California. We generated genome-wide single nucleotide polymorphism data and used Bayes factors species delimitation to compare alternative species delimitation...
Authors
Robert W. Bryson, Dustin A. Wood, Matthew R. Graham, Michael E. Soleglad, John E. McCormack

From top to bottom: Do Lake Trout diversify along a depth gradient in Great Bear Lake, NT, Canada? From top to bottom: Do Lake Trout diversify along a depth gradient in Great Bear Lake, NT, Canada?

Depth is usually considered the main driver of Lake Trout intraspecific diversity across lakes in North America. Given that Great Bear Lake is one of the largest and deepest freshwater systems in North America, we predicted that Lake Trout intraspecific diversity to be organized along a depth axis within this system. Thus, we investigated whether a deep-water morph of Lake Trout co...
Authors
Louise Chavarie, Kimberly L. Howland, Les N. Harris, Michael J. Hansen, William J. Harford, Colin P. Gallagher, Shauna M. Baillie, Brendan Malley, William M. Tonn, Andrew M. Muir, Charles C. Krueger

Juvenile Chinook Salmon mortality in a Snake River Reservoir: Smallmouth Bass predation revisited Juvenile Chinook Salmon mortality in a Snake River Reservoir: Smallmouth Bass predation revisited

Predation by nonnative fishes has been identified as a contributing factor in the decline of juvenile salmonids in the Columbia River basin. We examined the diet composition of Smallmouth Bass Micropterus dolomieu and estimated the consumption and predation loss of juvenile Chinook Salmon Oncorhynchus tshawytscha in Lower Granite Reservoir on the Snake River. We examined 4,852 Smallmouth...
Authors
John M. Erhardt, Kenneth F. Tiffan, William P. Connor

Reexamining the frequency range of hearing in silver (Hypophthalmichthys molitrix) and bighead (H. nobilis) carp Reexamining the frequency range of hearing in silver (Hypophthalmichthys molitrix) and bighead (H. nobilis) carp

Silver (Hypophthalmichthys molitrix) and bighead (H. nobilis) carp (collectively bigheaded carp) are invasive fish that threaten aquatic ecosystems in the upper Midwest United States and the Laurentian Great Lakes. Controlling bigheaded carp is a priority of fisheries managers and one area of focus involves developing acoustic deterrents to prevent upstream migration. For an acoustic...
Authors
Brooke J. Vetter, Marybeth K. Brey, Allen F. Meninger

Associating sex-biased and seasonal behaviour with contact patterns and transmission risk in Gopherus agassizii Associating sex-biased and seasonal behaviour with contact patterns and transmission risk in Gopherus agassizii

Interactions between wildlife hosts act as transmission routes for directly transmitted pathogens and vary in ways that affect transmission efficiency. Identifying drivers of contact variation can allow both contact inference and estimation of transmission dynamics despite limited data. In desert tortoises, mating strategy, burrow use and seasonal change influence numerous behaviours and...
Authors
Christina M. Aiello, Todd Esque, K. E. Nussear, P. G. Emblidge, Peter J. Hudson

Size, growth, and size‐selective mortality of subyearling Chinook Salmon during early marine residence in Puget Sound Size, growth, and size‐selective mortality of subyearling Chinook Salmon during early marine residence in Puget Sound

In marine ecosystems, survival can be heavily influenced by size‐selective mortality during juvenile life stages. Understanding how and when size‐selective mortality operates on a population can reveal underlying growth dynamics and size‐selective ecological processes affecting the population and thus can be used to guide conservation efforts. For subyearling Chinook Salmon Oncorhynchus
Authors
Madilyn M. Gamble, Kristin A. Connelly, Jennifer R. Gardner, Joshua W. Chamberlin, Kenneth I. Warheit, David A. Beauchamp

Proximate composition, lipid utilization and validation of a non‐lethal method to determine lipid content in migrating American shad Alosa sapidissima Proximate composition, lipid utilization and validation of a non‐lethal method to determine lipid content in migrating American shad Alosa sapidissima

Lipid content forms the most important energy reserve in anadromous fish and can limit survival, migration and reproductive success. A fat meter was evaluated and compared with a traditional extractive method of measuring available lipid for migrating American shad Alosa sapidissima in the Connecticut River, U.S.A. The fat meter gives rapid (
Authors
Shannon Michael Bayse, Amy M. Regish, Stephen D. McCormick

Phylogeny and species traits predict bird detectability Phylogeny and species traits predict bird detectability

Avian acoustic communication has resulted from evolutionary pressures and ecological constraints. We therefore expect that auditory detectability in birds might be predictable by species traits and phylogenetic relatedness. We evaluated the relationship between phylogeny, species traits, and field‐based estimates of the two processes that determine species detectability (singing rate and...
Authors
Peter Solymos, Steven M. Matsuoka, Diana Stralberg, Nicole K. S. Barker, Erin M. Bayne

Effects of contemporary land-use and land-cover change on the carbon balance of terrestrial ecosystems in the United States Effects of contemporary land-use and land-cover change on the carbon balance of terrestrial ecosystems in the United States

Changes in land use and land cover (LULC) can have profound effects on terrestrial carbon dynamics, yet their effects on the global carbon budget remain uncertain. While land change impacts on ecosystem carbon dynamics have been the focus of numerous studies, few efforts have been based on observational data incorporating multiple ecosystem types spanning large geographic areas over long...
Authors
Benjamin M. Sleeter, Jinxun Liu, Colin J. Daniel, Bronwyn Rayfield, Jason T. Sherba, Todd Hawbaker, Zhiliang Zhu, Paul C. Selmants, Thomas R. Loveland

Mineral constraints on arctic caribou (Rangifer tarandus): a spatial and phenological perspective Mineral constraints on arctic caribou (Rangifer tarandus): a spatial and phenological perspective

Arctic caribou (Rangifer tarandus) have the longest terrestrial migration of any ungulate but little is known about the spatial and seasonal variation of minerals in summer forages and the potential impacts of mineral nutrition on the foraging behavior and nutritional condition of arctic caribou. We investigated the phenology, availability, and mechanistic relationships of calcium...
Authors
K. W. Oster, P.S. Barboza, David D. Gustine, Kyle Joly, R. D. Shively

Antibiotic-resistant Escherichia coli in migratory birds inhabiting remote Alaska Antibiotic-resistant Escherichia coli in migratory birds inhabiting remote Alaska

We explored the abundance of antibiotic-resistant Escherichia coli among migratory birds at remote sites in Alaska and used a comparative approach to speculate on plausible explanations for differences in detection among species. At a remote island site, we detected antibiotic-resistant E. coli phenotypes in samples collected from glaucous-winged gulls (Larus glaucescens), a species...
Authors
Andrew M. Ramey, Jorge Hernandez, Veronica Tyrlov, Brian D. Uher-Koch, Joel A. Schmutz, Clara Atterby, Josef D. Jarhult, Jonas Bonnedahl

Lessons learned from research and surveillance directed at highly pathogenic influenza A viruses in wild birds inhabiting North America Lessons learned from research and surveillance directed at highly pathogenic influenza A viruses in wild birds inhabiting North America

Following detections of highly pathogenic (HP) influenza A viruses (IAVs) in wild birds inhabiting East Asia after the turn of the millennium, the intensity of sampling of wild birds for IAVs increased throughout much of North America. The objectives for many research and surveillance efforts were directed towards detecting Eurasian origin HP IAVs and understanding the potential of such...
Authors
Andrew M. Ramey, Thomas J. DeLiberto, Yohannes Berhane, David E. Swayne, David E. Stallknecht
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