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Publications

This list of publications includes peer-review journal articles, official USGS publications series, reports and more authored by scientists in the Ecosystems Mission Area. A database of all USGS publications, with advanced search features, can be accessed at the USGS Publications Warehouse.  

Filter Total Items: 42702

Integrating remote sensing with species distribution models; Mapping tamarisk invasions using the Software for Assisted Habitat Modeling (SAHM) Integrating remote sensing with species distribution models; Mapping tamarisk invasions using the Software for Assisted Habitat Modeling (SAHM)

Early detection of invasive plant species is vital for the management of natural resources and protection of ecosystem processes. The use of satellite remote sensing for mapping the distribution of invasive plants is becoming more common, however conventional imaging software and classification methods have been shown to be unreliable. In this study, we test and evaluate the use of five...
Authors
Amanda M. West, Paul H. Evangelista, Catherine S. Jarnevich, Nicholas E. Young, Thomas J. Stohlgren, Colin Talbert, Marian Talbert, Jeffrey Morisette, Ryan Anderson

Stakeholder views of management and decision support tools to integrate climate change into Great Lakes Lake Whitefish management Stakeholder views of management and decision support tools to integrate climate change into Great Lakes Lake Whitefish management

Decision support tools can aid decision making by systematically incorporating information, accounting for uncertainties, and facilitating evaluation between alternatives. Without user buy-in, however, decision support tools can fail to influence decision-making processes. We surveyed fishery researchers, managers, and fishers affiliated with the Lake Whitefish Coregonus clupeaformis...
Authors
Abigail J. Lynch, William W. Taylor, Aaron M. McCright

Detection limits of quantitative and digital PCR assays and their influence in presence-absence surveys of environmental DNA Detection limits of quantitative and digital PCR assays and their influence in presence-absence surveys of environmental DNA

A set of universal guidelines is needed to determine the limit of detection (LOD) in PCR-based analyses of low concentration DNA. In particular, environmental DNA (eDNA) studies require sensitive and reliable methods to detect rare and cryptic species through shed genetic material in environmental samples. Current strategies for assessing detection limits of eDNA are either too stringent...
Authors
Margaret Hunter, Robert M. Dorazio, John S. Butterfield, Gaia Meigs-Friend, Leo Nico, Jason A. Ferrante

Impacts of shore expansion and catchment characteristics on lacustrine thermokarst records in permafrost lowlands, Alaska Arctic Coastal Plain Impacts of shore expansion and catchment characteristics on lacustrine thermokarst records in permafrost lowlands, Alaska Arctic Coastal Plain

Arctic lowland landscapes have been modified by thermokarst lake processes throughout the Holocene. Thermokarst lakes form as a result of ice-rich permafrost degradation, and they may expand over time through thermal and mechanical shoreline erosion. We studied proximal and distal sedimentary records from a thermokarst lake located on the Arctic Coastal Plain of northern Alaska to...
Authors
Josefine Lenz, Benjamin M. Jones, Sebastian Wetterich, Rik Tjallingii, Michael Fritz, Christopher D. Arp, Natalia Rudaya, Guido Grosse

Deposition, accumulation, and alteration of Cl−, NO3−, ClO4− and ClO3− salts in a hyper-arid polar environment: Mass balance and isotopic constraints Deposition, accumulation, and alteration of Cl−, NO3−, ClO4− and ClO3− salts in a hyper-arid polar environment: Mass balance and isotopic constraints

The salt fraction in permafrost soils/sediments of the McMurdo Dry Valleys (MDV) of Antarctica can be used as a proxy for cold desert geochemical processes and paleoclimate reconstruction. Previous analyses of the salt fraction in MDV permafrost soils have largely been conducted in coastal regions where permafrost soils are variably affected by aqueous processes and mixed inputs from...
Authors
Andrew Jackson, Alfonso F. Davila, John Karl Böhlke, Neil C. Sturchio, Ritesh Sevanthi, Nubia Estrada, Maeghan Brundrett, Denis Lacelle, Christopher P. McKay, Armen Poghosyan, Wayne Pollard, Kris Zacny

Bounded fractional diffusion in geological media: Definition and Lagrangian approximation Bounded fractional diffusion in geological media: Definition and Lagrangian approximation

Spatiotemporal Fractional-Derivative Models (FDMs) have been increasingly used to simulate non-Fickian diffusion, but methods have not been available to define boundary conditions for FDMs in bounded domains. This study defines boundary conditions and then develops a Lagrangian solver to approximate bounded, one-dimensional fractional diffusion. Both the zero-value and non-zero-value...
Authors
Yong Zhang, Christopher T. Green, Eric M. LaBolle, Roseanna M. Neupauer, Hong-Guang Sun

The automated reference toolset: A soil-geomorphic ecological potential matching algorithm The automated reference toolset: A soil-geomorphic ecological potential matching algorithm

Ecological inventory and monitoring data need referential context for interpretation. Identification of appropriate reference areas of similar ecological potential for site comparison is demonstrated using a newly developed automated reference toolset (ART). Foundational to identification of reference areas was a soil map of particle size in the control section (PSCS), a theme in US Soil...
Authors
Travis W. Nauman, Michael C. Duniway

A suspended dive-net technique for catching territorial divers A suspended dive-net technique for catching territorial divers

A variety of methods such as night-lighting and lift nets have been used to catch divers (Gavidae), although 24-hour daylight in the Arctic summer and the remote nature of field sites can make the use of these traditional methods impossible. Our research required capture of adult divers at remote locations in northern Alaska. Here we describe a suspended dive-net technique that we used...
Authors
Brian D. Uher-Koch, Daniel Rizzolo, Kenneth G. Wright, Joel A. Schmutz

Response of imperiled Okaloosa darters to stream restoration Response of imperiled Okaloosa darters to stream restoration

The Okaloosa Darter Etheostoma okaloosae is a small percid endemic to six stream drainages in northwestern Florida. The U.S. Fish and Wildlife Service listed Okaloosa Darters as endangered in 1973 and downlisted them to threatened in 2011 because of habitat improvements and increasing abundance across much of their geographic range. Delisting is possible if remaining recovery criteria...
Authors
David B. Reeves, William B. Tate, Howard L. Jelks, Frank Jordan

Phenology of the adult angel lichen moth (Cisthene angelus) in Grand Canyon, USA Phenology of the adult angel lichen moth (Cisthene angelus) in Grand Canyon, USA

We investigated the phenology of adult angel lichen moths (Cisthene angelus) along a 364-km long segment of the Colorado River in Grand Canyon, Arizona, USA, using a unique data set of 2,437 light-trap samples collected by citizen scientists. We found that adults of C. angelus were bivoltine from 2012 to 2014. We quantified plasticity in wing lengths and sex ratios among the two...
Authors
Anya N. Metcalfe, Theodore A. Kennedy, Jeffrey D. Muehlbauer

Bacterial genomics reveal the complex epidemiology of an emerging pathogen in arctic and boreal ungulates Bacterial genomics reveal the complex epidemiology of an emerging pathogen in arctic and boreal ungulates

Northern ecosystems are currently experiencing unprecedented ecological change, largely driven by a rapidly changing climate. Pathogen range expansion, and emergence and altered patterns of infectious disease, are increasingly reported in wildlife at high latitudes. Understanding the causes and consequences of shifting pathogen diversity and host-pathogen interactions in these ecosystems...
Authors
Taya L. Forde, Karin Orsel, Ruth N. Zadoks, Roman Biek, Layne G. Adams, Sylvia L. Checkley, Tracy Davison, Jeroen De Buck, Mathieu Dumond, Brett T. Elkin, Laura Finnegan, Bryan J. Macbeth, Cait Nelson, Amanda Niptanatiak, Shane Sather, Helen M. Schwantje, Frank van der Meer, Susan J. Kutz

Low-cost floating emergence net and bottle trap: Comparison of two designs Low-cost floating emergence net and bottle trap: Comparison of two designs

Sampling emergent aquatic insects is of interest to many freshwater ecologists. Many quantitative emergence traps require the use of aspiration for collection. However, aspiration is infeasible in studies with large amounts of replication that is often required in large biomonitoring projects. We designed an economic, collapsible pyramid-shaped floating emergence trap with an external...
Authors
Pete Cadmus, Justin Pomeranz, Johanna M. Kraus
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