Publications
Browse more than 160,000 publications authored by our scientists over the past 100+ year history of the USGS. Publications available are: USGS-authored journal articles, series reports, book chapters, other government publications, and more.
Mission Area Publications
Mission Area Publications
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U.S. Geological Survey science strategy to address highly pathogenic avian influenza and its effects on wildlife health 2025–29 U.S. Geological Survey science strategy to address highly pathogenic avian influenza and its effects on wildlife health 2025–29
Executive Summary Highly pathogenic avian influenza (HPAI) is an ecologically and economically important animal disease that can also directly affect humans (a “zoonotic” disease). HPAI was once limited almost exclusively to domestic poultry but has rapidly adapted to diverse animal hosts. Viruses causing HPAI now appear to be maintained and dispersed by wild birds largely independent of...
Authors
Andrew M. Ramey, Diann J. Prosser, Laura E. Hubbard, Guelaguetza Vazquez-Meves, Amy George, M. Camille Hopkins
Applying the resist-accept-direct (RAD) framework to wildlife health management Applying the resist-accept-direct (RAD) framework to wildlife health management
Wildlife diseases can have substantial impacts on wildlife populations as well as on human and domestic animal health and well-being. Although many agencies and stakeholders share a goal of supporting wildlife health, reducing wildlife disease burden is complicated by a scarcity of effective interventions for wildlife, competition for funds, and conflicting priorities. As a result...
Authors
Wynne Emily Moss, Gregor W. Schuurman, Emily S. Almberg, Danielle Buttke, Nathan L. Galloway, Samantha E.J. Gibbs, Anne Hubbs, Katherine Richgels, C. LeAnn White, Paul C. Cross
Hydraulic connectivity and hydrochemistry influence microbial community structure in agriculturally-affected alluvial aquifers in the Midwestern United States Hydraulic connectivity and hydrochemistry influence microbial community structure in agriculturally-affected alluvial aquifers in the Midwestern United States
Alluvial aquifers can provide ecosystem services and drinking water, but much remains unknown about human effects on aquifer microbiomes. Therefore, we used amplicon sequencing and hydrochemical characterization to pair microbial communities with environmental conditions across 37 alluvial aquifer wells. The study region spanned eastern Iowa and southern Minnesota (USA) and contained a...
Authors
Hunter Schroer, Kendra M. Markland, Fangqiong Ling, Craig L. Just
Assimilation of reduced carbon triggers platinum alloy saturation in mafic and ultramafic magmas Assimilation of reduced carbon triggers platinum alloy saturation in mafic and ultramafic magmas
It is generally observed that magmatic sulfide ores have higher ratios of Pd/Pt than the mantle-like values of their parental magmas. This discrepancy has defied simple explanation because the partitioning behavior of both elements between sulfide and silicate liquids is very similar. Assimilation of sulfur- and carbon-rich country rocks by mafic and ultramafic magmas is considered a...
Authors
Ying Zhou Li, William D. Smith, Michael Jenkins, Zhuosen Yao, James E. Mungall
A generalized deep learning model to detect and classify volcano seismicity A generalized deep learning model to detect and classify volcano seismicity
Volcano seismicity is often detected and classified based on its spectral properties. However, the wide variety of volcano seismic signals and increasing amounts of data make accurate, consistent, and efficient detection and classification challenging. Machine learning (ML) has proven very effective at detecting and classifying tectonic seismicity, particularly using Convolutional Neural...
Authors
David Fee, Darren Tan, John J. Lyons, Mariangela Sciotto, Andrea Cannata, Alicia J. Hotovec-Ellis, Tarsilo Girona, Aaron Wech, Diana Roman, Matthew M. Haney, Silvio De Angelis
Evaluating the influence of constructed subtidal reefs on marsh shoreline erosion, sediment deposition, and wave energy Evaluating the influence of constructed subtidal reefs on marsh shoreline erosion, sediment deposition, and wave energy
Salt marshes play a critical role in providing economic and ecological benefits but are susceptible to shoreline erosion. Natural and nature-based features (NNBF), such as breakwater reefs, are often used to reduce shoreline exposure to wave action and provide biogenic benefits. However, waves and water level are also responsible for the sediment supply necessary for marsh accretion, a...
Authors
Kathryn Smith, Jonathan L. Pitchford, Eric L. Sparks, Michael J. Archer, Matthew Virden, Joseph F. Terrano, Christopher G. Smith
Risk implications of Poisson assumptions and declustering inferred from a fully time-dependent earthquake forecast Risk implications of Poisson assumptions and declustering inferred from a fully time-dependent earthquake forecast
We use the Third Uniform California Earthquake Rupture Forecast Epidemic Type Aftershock Sequence model, which is fully time-dependent in terms of including spatiotemporal clustering, to evaluate the effects of the Poisson assumption and declustering algorithms on statewide loss exceedance curves. The model is simulation based, meaning it produces synthetic catalogs that exhibit...
Authors
Edward H. Field, Kevin Ross Milner, Keith A. Porter
Assessment of continuous oil and gas resources in the Upper Cretaceous Niobrara Formation in the Southwestern Wyoming Province, Wyoming and Colorado, 2024 Assessment of continuous oil and gas resources in the Upper Cretaceous Niobrara Formation in the Southwestern Wyoming Province, Wyoming and Colorado, 2024
Using a geology-based assessment methodology, the U.S. Geological Survey estimated undiscovered, technically recoverable mean continuous resources of 703 million barrels of oil and 5.8 trillion cubic feet of gas in the Niobrara Formation in the Southwestern Wyoming Province, Wyoming and Colorado.
Authors
Kira K. Timm, Christopher J. Schenk, Jane S. Hearon, Thomas M. Finn, Sarah E. Gelman, Cheryl A. Woodall, Tracey J. Mercier, Andrea D. Cicero, Ronald M. Drake, Geoffrey S. Ellis, Michael H. Gardner, Benjamin G. Johnson, Jenny H. Lagesse, Phuong A. Le, Heidi M. Leathers-Miller, Scott S. Young
Expanding national-scale wildlife disease surveillance systems with research networks Expanding national-scale wildlife disease surveillance systems with research networks
Efficient learning about disease dynamics in free-ranging wildlife systems can benefit from active surveillance that is standardized across different ecological contexts. For example, active surveillance that targets specific individuals and populations with standardized sampling across ecological contexts (landscape-scale targeted surveillance) is important for developing a mechanistic
Authors
Kim M. Pepin, Matthew A. Combs, Guillaume Bastille-Rousseau, M.E. Craft, Paul C. Cross, M.A. Diuk-Wasser, R.B. Gagne, Travis Gallo, Tyler Garwood, J.D. Heale, J. Hewitt, J. Hoy-Petersen, Jennifer L. Malmberg, Jennifer M. Mullinax, L. Plimpton, Lauren Smith, M.C. VanAcker, J.C. Chandler, W. David Walter, Grete WIlson-Henjum, George Wittemyer, Kezia R. Manlove
Targeted quantitation of 6ppd-quinone in fish tissue samples with liquid chromatography-tandem mass spectrometry Targeted quantitation of 6ppd-quinone in fish tissue samples with liquid chromatography-tandem mass spectrometry
The tire additive transformation product N-(1,3-dimethylbutyl)-N’-phenyl-p-phenylenediamine-quinone (6PPD-quinone) has recently garnered global attention due to its acute toxicity to some salmonids, such as coho salmon (Oncorhynchus kisutch), and its ubiquitous presence in urban stormwater systems. In the present study, we developed and compared the extraction efficiency of two sample...
Authors
Adam H. Moody, David J. Soucek, David A. Alvarez
Human perturbations to mercury in global rivers Human perturbations to mercury in global rivers
Mercury compounds are potent neurotoxins that pose threats to human health, primarily through fish consumption. Rivers, critical for drinking water and food supply, have seen rapid increases in mercury concentrations and export to coastal margins since the Industrial Revolution (~1850). However, patterns of these changes remain understudied, limiting assessments of environmental policies...
Authors
Dong Peng, Zeli Tan, Tengfei Yuan, Peipei Wu, Zhengcheng Song, Peng Zhang, Shaojian Huang, Yanxu Zhang, Ting Lei, Beth Middleton, Jeroen E. Sonke, Guangchun Lei, Jianhua Gao
Population growth of threatened Gulf Sturgeon may be limited by the frequency of adult episodic mortality events Population growth of threatened Gulf Sturgeon may be limited by the frequency of adult episodic mortality events
Objective We identified spatial and temporal variation in population trends for Gulf Sturgeon Acipenser desotoi (previously known as Acipenser oxyrinchus desotoi) across the species’ range to inform recovery strategies. We also assessed whether adult survival or recruitment more strongly influences population change.Methods We analyzed adult Gulf Sturgeon capture–recapture data from 1990...
Authors
Stephen W. Parker, William E. Pine, Brian D. Healy, James E. Hines