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Publications

Browse more than 160,000 publications authored by our scientists over the past 100+ year history of the USGS.  Publications available are: USGS-authored journal articles, series reports, book chapters, other government publications, and more.

Filter Total Items: 175380

Genome-wide association analysis of the resistance to infectious hematopoietic necrosis virus in two rainbow trout aquaculture lines confirms oligogenic architecture with several moderate effect quantitative trait loci Genome-wide association analysis of the resistance to infectious hematopoietic necrosis virus in two rainbow trout aquaculture lines confirms oligogenic architecture with several moderate effect quantitative trait loci

Infectious hematopoietic necrosis (IHN) is a disease of salmonid fish that is caused by the IHN virus (IHNV), which can cause substantial mortality and economic losses in rainbow trout aquaculture and fisheries enhancement hatchery programs. In a previous study on a commercial rainbow trout breeding line that has undergone selection, we found that genetic resistance to IHNV is controlled...
Authors
Yniv Palti, Roger L. Vallejo, Maureen K. Purcell, Guangtu Gao, Kristy L. Shewbridge, Roseanna L. Long, Christopher Setzke, Breno O. Fragomeni, Hao Cheng, Kyle E. Martin, Kerrry A. Naish

Magnitude and frequency of floods in the Coastal Plain region of Louisiana, 2016 Magnitude and frequency of floods in the Coastal Plain region of Louisiana, 2016

To improve flood-frequency estimates for rural streams in the Coastal Plain region of Louisiana, generalized least-squares regression techniques were used to relate corresponding annual exceedance probability streamflows for 211 streamgages in the region to a suite of explanatory variables that include physical, climatic, pedologic, and land-use characteristics of the streamgage drainage...
Authors
Paul A. Ensminger, Daniel M. Wagner, Amanda Whaling

Biodiversity loss reduces global terrestrial carbon storage Biodiversity loss reduces global terrestrial carbon storage

Natural ecosystems store large amounts of carbon globally, as organisms absorb carbon from the atmosphere to build large, long-lasting, or slow-decaying structures such as tree bark or root systems. An ecosystem’s carbon sequestration potential is tightly linked to its biological diversity. Yet when considering future projections, many carbon sequestration models fail to account for the...
Authors
Sarah R. Weiskopf, Forest Isbell, Maria Isabel Arce-Plata, Moreno Di Marco, Mike Harfoot, Justin A. Johnson, Susannah B. Lerman, Brian W. Miller, Toni Lyn Morelli, Akira S. Mori, Ensheng Weng, Simon Ferrier

The SCEC/USGS community stress drop validation study using the 2019 Ridgecrest earthquake sequence The SCEC/USGS community stress drop validation study using the 2019 Ridgecrest earthquake sequence

We introduce a community stress drop validation study using the 2019 Ridgecrest, California, earthquake sequence, in which researchers are invited to use a common dataset to independently estimate comparable measurements using a variety of methods. Stress drop is the change in average shear stress on a fault during earthquake rupture, and as such is a key parameter in many ground motion...
Authors
Annemarie S. Baltay Sundstrom, Rachel E. Abercrombie, Shanna Xianhui Chu, Taka’aki Taira

Illegal shooting of protected nongame birds along power lines coincides with places and times of peak legal recreational shooting Illegal shooting of protected nongame birds along power lines coincides with places and times of peak legal recreational shooting

Illegal killing of protected nongame birds is pervasive and can be demographically relevant. In 2021 and 2022, we evaluated spatial and temporal patterns in illegal killing of birds along 69.7 km of power lines in the Morley Nelson Snake River Birds of Prey National Conservation Area in Idaho, USA, to provide insight into potential drivers behind the activity and key information to...
Authors
Eve C. Thomason, James R. Belthoff, Sharon A. Poessel, Todd E. Katzner

Earthquake relocations delineate discrete a fault network and deformation corridor throughout Southeast Alaska and Southwest Yukon Earthquake relocations delineate discrete a fault network and deformation corridor throughout Southeast Alaska and Southwest Yukon

Deformation in southeastern Alaska and southwest Yukon is governed by the subduction and translation of the Pacific-Yakutat plates relative to the North American plate in the St. Elias region. Despite notable historical seismicity and major regional faults, studies of the region between the Fairweather and Denali faults are complicated by glacial coverage and the remote setting. In the...
Authors
Katherine M. Biegel, Jeremy M. Gosselin, Jan Dettmer, Maurice Colpron, Eva Enkelmann, Jonathan Saul Caine

Discovery and genomic characterization of a novel hepadnavirus from asymptomatic anadromous alewife (Alosa pseudoharengus) Discovery and genomic characterization of a novel hepadnavirus from asymptomatic anadromous alewife (Alosa pseudoharengus)

The alewife (Alosa pseudoharengus) is an anadromous herring that inhabits waters of northeastern North America. This prey species is a critical forage for piscivorous birds, mammals, and fishes in estuarine and oceanic ecosystems. During a discovery project tailored to identify potentially emerging pathogens of this species, we obtained the full genome of a novel hepadnavirus (ApHBV)...
Authors
Clayton D. Raines, Jan Lovy, Nicolas B.D. Phelps, Sunil Mor, Terry Ng, Luke R. Iwanowicz

Earthquake cycle mechanics during caldera collapse: Simulating the 2018 Kīlauea eruption Earthquake cycle mechanics during caldera collapse: Simulating the 2018 Kīlauea eruption

In multiple observed caldera-forming eruptions, the rock overlying a draining magma reservoir dropped downward along ring faults in sequences of discrete collapse earthquakes. These sequences are analogous to tectonic earthquake cycles and provide opportunities to examine fault mechanics and collapse eruption dynamics over multiple events. Collapse earthquake cycles have been studied...
Authors
Joshua Allen Crozier, Kyle R. Anderson

Ecological dissimilarity matters more than geographical distance when predicting land surface indicators using machine learning Ecological dissimilarity matters more than geographical distance when predicting land surface indicators using machine learning

Supervised training techniques, such as those used in machine learning, use generally large sets of in situ data to train models that can, in turn, be used to make predictions (or prediction maps) about the Earth’s surface in times or places where no in situ data exist. The purpose of the present study is to investigate, using a very large set of in situ data from across the western...
Authors
Bo Zhou, Gregory S. Okin, Junzhe Zhang, Shannon L. Savage, Christopher J. Cole, Michael C. Duniway

Setting a pluralist agenda for water governance: Why power and scale matter Setting a pluralist agenda for water governance: Why power and scale matter

Global water systems are facing unprecedented pressures, including climate change-driven drought and escalating flood risk, environmental contamination, and over allocation. Water management and governance typically lack integration across spatial scales, including relationships between surface and ground water systems. They also routinely ignore connectivity across temporal scales...
Authors
Elizabeth Macpherson, Rosa I. Cuppari, Aurora Kagawa-Viviani, Holly Brause, William A. Brewer, William E Grant, Nicole M. Herman-Mercer, Ben Livneh, Kaustuv Raj Neupane, Tanya N. Petach, Chelsea N. Peters, Hsiao-Hsuan Wang, Claudia Pahl-Wostl, Howard Wheater

Human-induced range expansions result in a recent hybrid zone between sister species of ducks Human-induced range expansions result in a recent hybrid zone between sister species of ducks

Landscapes are consistently under pressure from human-induced ecological change, often resulting in shifting species distributions. For some species, changing the geographical breadth of their niche space results in matching range shifts to regions other than those in which they are formally found. In this study, we employ a population genomics approach to assess potential conservation...
Authors
Philip Lavretsky, Kevin J. Kraai, David Butler, James Morel, Jay Alan VonBank, Joseph Marty, Vergie Musni, Daniel P. Collins

Evaluating the effectiveness of joint species distribution modeling for fresh water fish communities within large watersheds Evaluating the effectiveness of joint species distribution modeling for fresh water fish communities within large watersheds

Accurately predicting species’ distributions is critical for the management and conservation of fish and wildlife populations. Joint Species Distribution Models (JSDMs) account for dependencies between species often ignored by traditional species distribution models. We evaluated how a JSDM approach could improve predictive strength for stream fish communities within large watersheds...
Authors
Paul McLaughlin, Kevin Krause, Kelly O. Maloney, Taylor Woods, Tyler Wagner
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