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Publications

Browse more than 160,000 publications authored by our scientists over the past 100+ year history of the USGS.  Publications available are: USGS-authored journal articles, series reports, book chapters, other government publications, and more.

Filter Total Items: 177046

Stony coral tissue loss disease accelerated shifts in coral composition and declines in reef accretion potential in the Florida Keys Stony coral tissue loss disease accelerated shifts in coral composition and declines in reef accretion potential in the Florida Keys

Outbreaks of coral disease have been a dominant force shaping western Atlantic coral-reef assemblages since the late 1970s. Stony coral tissue loss disease (SCTLD) is nonetheless having an unprecedented impact in the region. Whereas numerous studies over the last decade have worked to characterize this novel pathogen and its impacts on coral populations, few have quantified its...
Authors
Lauren T. Toth, Travis A. Courtney, Michael A. Colella, Robert R. Ruzicka

Factors influencing autumn–winter movements of midcontinent Mallards and consequences for harvest and habitat management Factors influencing autumn–winter movements of midcontinent Mallards and consequences for harvest and habitat management

Annual phenology and distributions of migratory wildlife have been noticeably influenced by climate change, leading to concerns about sustainable populations. Recent studies exploring conditions influencing autumn migration departure have provided conflicting insights regarding factors influencing the movements of Mallards (Anas platyrhynchos), a popular game species. We determined...
Authors
Aaron T. Pearse, M. Szymanski, Cynthia A. Anchor, Michael J. Anteau, Rocco Murano, David A. Brandt, Joshua D. Stafford

Responses of native freshwater mussels to remediation to remove polychlorinated biphenyl-contaminated sediments in the upper Hudson River Responses of native freshwater mussels to remediation to remove polychlorinated biphenyl-contaminated sediments in the upper Hudson River

The Hudson River, New York, was contaminated with polychlorinated biphenyls (PCBs) from two manufacturing plants over a period of approximately 30 years, and PCBs are still present in sediment and biota today. The river provides habitat for a variety of plants and animals, including native freshwater mussels. A remediation programme, consisting of dredging followed by the placement of...
Authors
Teresa J. Newton, Denise A. Mayer, James T. Rogala, Sean S. Madden, Brian R. Gray

Spatial distribution and diet of Lake Michigan juvenile lake trout Spatial distribution and diet of Lake Michigan juvenile lake trout

Most studies of Lake Michigan lake trout (Salvelinus namaycush) have focused on adults, with scant attention to juveniles (
Authors
Benjamin Scott Leonhardt, Ralph W. Tingley, Charles P. Madenjian, Lynn M. Ogilvie, Brian Roth, Jory L. Jonas, Jason B. Smith

Model-based surveillance system design under practical constraints with application to white-nose syndrome Model-based surveillance system design under practical constraints with application to white-nose syndrome

Infectious diseases are powerful ecological forces structuring ecosystems, causing devastating economic impacts and disrupting society. Successful prevention and control of pathogens requires knowledge of the current scope and severity of disease, as well as the ability to forecast future disease dynamics. Assessment of the current situation as well as prediction of the future conditions...
Authors
Gina Oh, Srikanth Aravamuthan, Ting Fung Ma, Juan Francisco Mandujano Juan Francisco Reyes, Anne Ballmann, Trevor J. Hefley, Ian McGahan, Robin Russell, Daniel P. Walsh, Juntao Zhu

Isothermal recombinant polymerase amplification and CRIPSR (CAS12A) assay detection of Renibacterium salmoninarum as an example for wildlife pathogen detection in environmental DNA samples Isothermal recombinant polymerase amplification and CRIPSR (CAS12A) assay detection of Renibacterium salmoninarum as an example for wildlife pathogen detection in environmental DNA samples

Improving rapid detection methods for pathogens is important for research as we collectively aim to improve the health of ecosystems globally. In the northern hemisphere, the success of salmon (Oncorhynchus spp.) populations is vitally important to the larger marine, aquatic, and terrestrial ecosystems they inhabit. This has led to managers cultivating salmon in hatcheries and...
Authors
Erin D’Agnese, Dorothy M. Chase, Elizabeth Andruszkiewicz-Allan

Evolutionary and ecological correlates of thiaminase in fishes Evolutionary and ecological correlates of thiaminase in fishes

Thiamine (vitamin B1) is required by all living organisms in multiple metabolic pathways. It is scarce in natural systems, and deficiency can lead to reproductive failure, neurological issues, and death. One major cause of thiamine deficiency is an overreliance on diet items containing the enzyme thiaminase. Thiaminase activity has been noted in many prey fishes and linked to cohort...
Authors
Freya Elizabeth Rowland, Cathy A. Richter, Donald E Tillitt, David Walters

Climate, heatwaves, nearshore ecosystems and the sunflower sea star Climate, heatwaves, nearshore ecosystems and the sunflower sea star

At the nexus of the ocean and the land lies the nearshore ecosystem, which includes the intertidal zone, an area exposed during low tides and submerged during high tides. Species in the intertidal are adapted to a high level of environmental variability including high temperatures, waves, and salinity variability. Species’ tolerance to desiccation in part determines the elevation within...
Authors
Sarah Beth Traiger, Robert M. Suryan, Heather A. Coletti, Daniel Esler

A watershed moment for western U.S. dams A watershed moment for western U.S. dams

The summer of 2023 is a notable time for water-resource management in the western United States: Glen Canyon Dam, on the Colorado River, turns 60 years old while the largest dam-removal project in history is beginning on the Klamath River. This commentary discusses these events in the context of a changing paradigm for dam and reservoir management in this region. Since the era of large...
Authors
Amy E. East, Gordon E. Grant

Disinfection protocols for herpetofaunal pathogens Disinfection protocols for herpetofaunal pathogens

The spread of disease-causing pathogens is a major threat to amphibians and reptiles worldwide (Converse and Greene 2005; Picco et al. 2007; Picco and Collins 2008; St-Amour et al. 2008; O’Hanlon et al. 2018; Scheele et al. 2019). The World Organisation for Animal Health’s global list of notifiable animal diseases includes herpetofaunal diseases caused by infection with Ranavirus spp....
Authors
Molly C. Bletz, James T. Julian, Megan S. Kirchgessner, James M. Drasher, Paula F. P. Henry, Susan D. Jewell, Pamela T. Meier, Kathy Michelle, Jennifer C. Olori, Kevin J. Oxenrider, Michael J. Ravesi, Scott A. Smith

A mixture of Nalbuphine, Azaperone, and Medetomidine for Immobilizing Ringtail (Bassariscus astutus) A mixture of Nalbuphine, Azaperone, and Medetomidine for Immobilizing Ringtail (Bassariscus astutus)

We evaluated a combination of nalbuphine HCl (40 mg/mL), azaperone tartrate (10 mg/mL), and medetomidine HCl (10 mg/mL), a combination known as NAM or NalMed-A, in 23 ringtails (Bassariscus astutus) during 29 handling events for a radio-collaring study in southern Oregon, US, from August 2020 to March 2022. The combination was delivered to ringtails by hand injection at 0.075 mL NAM per...
Authors
Lindsay N. Somers, DeWaine H. Jackson, Katie M. Dugger, Julia D. Burco
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