David S Pilliod
My research focuses on species conservation, habitat management, and effectiveness of restoration in a variety of terrestrial and aquatic ecosystems. I also co-lead the Pacific Northwest Environmental DNA Laboratory.
Wildlife Ecology and Conservation Biology Team (FRESC)
Wildlife Ecology and Conservation Biology Team (FRESC)
Pacific Northwest Environmental DNA Laboratory
Pacific Northwest Environmental DNA Laboratory
I lead a team of scientists that develop tools and models to improve understanding of ecological systems and solve challenging problems in natural resource management. We primarily address questions related to species conservation, wildlife habitat, and restoration. We combine molecular methods, remote sensing, field studies, and statistical modeling. Our research team also develops data management and decision support systems to facilitate adaptive management, especially in western rangelands. We primarily work on issues affecting the Intermountain West and Great Basin regions of the U.S.
Professional Experience
2006 - Present: USGS. Forest and Rangeland Ecosystem Science Center, Supervisory Research Ecologist, Boise, Idaho
Education and Certifications
Ph.D., Ecology, Idaho State University, Pocatello, ID (2001)
B.A., Biology, University of California, Santa Cruz, CA (1991)
Science and Products
If you are unable to access or download a product, email fresc_outreach@usgs.gov a request, including the full citation, or call (541) 750-1030.
Filter Total Items: 137
A round-robin evaluation of the repeatability and reproducibility of environmental DNA assays for dreissenid mussels A round-robin evaluation of the repeatability and reproducibility of environmental DNA assays for dreissenid mussels
Resource managers may be hesitant to make decisions based on environmental (e)DNA results alone since eDNA is an indirect method of species detection. One way to reduce the uncertainty of eDNA is to identify laboratory‐based protocols that ensure repeatable and reproducible results. We conducted a double‐blind round‐robin analysis of probe‐based assays for DNA of dreissenid (Dreissena...
Authors
Adam Sepulveda, Patrick Hutchins, Craig Jackson, Carl Ostberg, Matthew Laramie, Jon Amberg, Timothy D. Counihan, Andrew Hoegh, David Pilliod
Reptiles under the conservation umbrella of the greater sage‐grouse Reptiles under the conservation umbrella of the greater sage‐grouse
In conservation paradigms, management actions for umbrella species also benefit co‐occurring species because of overlapping ranges and similar habitat associations. The greater sage‐grouse (Centrocercus urophasianus) is an umbrella species because it occurs across vast sagebrush ecosystems of western North America and is the recipient of extensive habitat conservation and restoration...
Authors
David S. Pilliod, Michelle Jeffries, Robert Arkle, Deanna H. Olson
Pre‐fire vegetation drives post‐fire outcomes in sagebrush ecosystems: Evidence from field and remote sensing data Pre‐fire vegetation drives post‐fire outcomes in sagebrush ecosystems: Evidence from field and remote sensing data
Understanding the factors that influence vegetation responses to disturbance is important because vegetation is the foundation of food resources, wildlife habitat, and ecosystem properties and processes. We integrated vegetation cover data derived from field plots and remotely sensed Landsat images in two focal areas over a 37‐yr period (1979–2016) to investigate how historical changes...
Authors
Brittany S. Barker, David Pilliod, Matthew Rigge, Collin Homer
Integration of eDNA-based biological monitoring within the US Geological Survey’s national streamgage network Integration of eDNA-based biological monitoring within the US Geological Survey’s national streamgage network
This study explores the feasibility and utility of integrating environmental DNA (eDNA) assessments of species occurrences into the United States (U.S.) Geological Survey’s national streamgage network. We used an existing network of five gages in southwest Idaho to explore the type of information that could be gained as well as the associated costs and limitations. Hydrologic technicians...
Authors
David Pilliod, Matthew Laramie, Dorene McCoy, Scott Maclean
Modeling long-term effects of fuel treatments on fuel loads and fire regimes in the Great Basin Modeling long-term effects of fuel treatments on fuel loads and fire regimes in the Great Basin
The principal motivation for this study is that sagebrush-steppe ecosystems are undergoing significant state changes, and land managers are challenged with optimizing their resources for both short- and long-term use. Yet, limited knowledge is available regarding how the sagebrush-steppe will respond to environmental changes related to precipitation and temperature regimes, and...
Authors
Nancy Glenn, Alejandro Flores, Douglas Shinneman, David S. Pilliod
Adding invasive species bio-surveillance to the U.S. Geological Survey streamgage network Adding invasive species bio-surveillance to the U.S. Geological Survey streamgage network
The costs of invasive species in the United States alone are estimated to exceed US$100 billion per year so a critical tactic in minimizing the costs of invasive species is the development of effective, early-detection systems. To this end, we evaluated the efficacy of adding environmental (e)DNA surveillance to the U.S. Geological Survey (USGS) streamgage network, which consists of > 8...
Authors
Adam Sepulveda, Christian Schmidt, Jon Amberg, Patrick Hutchins, Christian Stratton, Christopher Mebane, Matthew Laramie, David Pilliod
Transient population dynamics impede restoration and may promote ecosystem transformation after disturbance Transient population dynamics impede restoration and may promote ecosystem transformation after disturbance
The apparent failure of ecosystems to recover from increasingly widespread disturbance is a global concern. Despite growing focus on factors inhibiting resilience and restoration, we still know very little about how demographic and population processes influence recovery. Using inverse and forward demographic modelling of 531 post‐fire sagebrush populations across the western US, we show...
Authors
Robert Shriver, Caitlin Andrews, Robert Arkle, David Barnard, Michael Duniway, Matthew J. Germino, David Pilliod, David Pyke, Justin Welty, John Bradford
Soil characteristics are associated with gradients of big sagebrush canopy structure after disturbance Soil characteristics are associated with gradients of big sagebrush canopy structure after disturbance
Reestablishing shrub canopy cover after disturbance in semi-arid ecosystems, such as sagebrush steppe, is essential to provide wildlife habitat and restore ecosystem functioning. While several studies have explored the effects of landscape and climate factors on the success or failure of sagebrush seeding, the influence of soil properties on gradients of shrub canopy structure in...
Authors
David Barnard, Matthew J. Germino, Robert Arkle, John Bradford, Michael Duniway, David Pilliod, David Pyke, Robert Shriver, Justin Welty
Effects of climate change on habitat and connectivity for populations of a vulnerable, endemic salamander in Iran Effects of climate change on habitat and connectivity for populations of a vulnerable, endemic salamander in Iran
Habitat loss and fragmentation are among the biggest threats to amphibian populations and anthropogenic climate change may exacerbate these. The response of Iran's amphibians to climate change is uncertain and yet making an accurate prediction of how the species will respond is critical for conservation. We assessed how expected future climate scenarios before the years 2050 and 2070...
Authors
Mohammad Ashrafzadeh, Ali Naghipour, Maryam Haidarian, Szilvia Kusza, David Pilliod
The ecological uncertainty of wildfire fuel breaks: Examples from the sagebrush steppe The ecological uncertainty of wildfire fuel breaks: Examples from the sagebrush steppe
Fuel breaks are increasingly being implemented at broad scales (100s to 10,000s of square kilometers) in fire‐prone landscapes globally, yet there is little scientific information available regarding their ecological effects (eg habitat fragmentation). Fuel breaks are designed to reduce flammable vegetation (ie fuels), increase the safety and effectiveness of fire‐suppression operations...
Authors
Douglas Shinneman, Matthew J. Germino, David Pilliod, Cameron Aldridge, Nicole Vaillant, Peter Coates
Can’t see the random forest for the decision trees: Selecting predictive models for restoration ecology Can’t see the random forest for the decision trees: Selecting predictive models for restoration ecology
Improving predictions of restoration outcomes is increasingly important to resource managers for accountability and adaptive management, yet there is limited guidance for selecting a predictive model from the multitude available. The goal of this paper was to identify an optimal predictive framework for restoration ecology using eleven modeling frameworks (including, machine learning...
Authors
David Barnard, Matthew Germino, David Pilliod, Robert Arkle, Cara Applestein, Bill Davidson, Matthew Fisk
Identification of bees in southwest Idaho—A guide for beginners Identification of bees in southwest Idaho—A guide for beginners
This document was prepared to help scientists and the public, both of whom may not be familiar with bee taxonomy, learn how to practically identify bees in sagebrush steppe and shrubland habitats in southwest Idaho. We provide information to identify bees to the level of family and genus. A tentative list of the bee genera captured at sites used for insect community studies is included.
Authors
Emily Sun, David Pilliod
Non-USGS Publications**
Arkle, R.S., Pilliod, D.S., Strickler, K.M., 2010, Fire, flow and dynamic equilibrium in stream macroinvertebrate communities: Freshwater Biology, v. 55, p. 299-314.
Jain, T.B., Graham, R.T., Pilliod, D.S., 2006, The relation between forest structure and soil burn severity In Andrews, P.L., Butler, B.W., eds., Fuels management: How to measure success, Proceedings: RMRS-P-41, Fort Collins, CO, USDA Forest Service Rocky Mountain Research Station, p. 615-631.
Pilliod, D.S., Bull, E.L., Hayes, J.L., Wales, B.C., 2006, Wildlife and Invertebrate Response to Fuel Reduction Treatments in Dry Coniferous Forests of the Western United States - A Synthesis: USDA, Forest Service, Rocky Mountain Research Station RMRS-GTR-173, p. 34.
Hossack, B.R., Corn, P.S., Pilliod, D.S., 2005, Lack of significant changes in the herpetofauna of Theodore Roosevelt National Park, North Dakota, since the 1920s: American Midland Naturalist, v. 154, p. 423-432.
Funk, W., Blouin, M.S., Corn, P.S., Maxell, B.A., Pilliod, D.S., Amish, S., Allendorf, F.W., 2005, Population structure of Columbia spotted frogs (Rana luteiventris)is strongly affected by the landscape: Molecular Ecology, v. 14, p. 483-496.
Pilliod, D.S., 2005, The Wildlife Habitat Response Model- Environmental Consequences Fact Sheet - 15: USDA Rocky Mountain Research Station RMRS-RN-23-15-WWW, p. 2.
Dunham, J.B., Pilliod, D.S., Young, M., 2004, Assessing the Consequences of Nonnative Trout in Headwater Ecosystems in Western North America: Fisheries, v. 29, no. 6, p. 18-26, https://doi.org/http://dx.doi.org/10.1577/1548-8446(2004)29[18:ATCONT]2.0.CO;2.
Pilliod, D.S., 2004, Wildlife Responses to Fuels Treatments- Key Considerations - Fuels planning- science synthesis and integration; environmental consequences fact sheet 20024: USDA Rocky Mountain Research Station RMRS-RN-23-4WWW, p. 2.
Pilliod, D.S., Peterson, C.R., Ritson, P.I., 2002, Seasonal migration of Columbia spotted frogs (Rana luteiventris) among complementary resources in a high mountain basin: Canadian Journal of Zoology, v. 80, p. 1849-1862.
Peterson, C.R., Burton, S.R., Pilliod, D.S., Lee, J.R., Cossell Jr., J.O., Llewellyn, R.L., 2001, Assessing the accuracy of GAP analysis predicted distributions of Idaho amphibians and reptiles: GAP Analysis Bulletin, v. 10, p. 25-28.
Pilliod, D.S., Peterson, C.R., 2001, Local and landscape effects of introduced trout on amphibians in historically fishless watersheds: Ecosystems, v. 4, p. 322-333.
Pilliod, D.S., Peterson, C.R., 2000, Evaluating effects of fish stocking on amphibian populations in wilderness lakes In Cole, D.N., McCool, S.F., Borrie, W.T., O'Loughlin, J., eds., Wilderness science in a time of change conference—Volume 5: Wilderness ecosystems, threats, and management; 2000 May 23–27; Missoula, MT, Proceedings: RMRS-P-15_VOL-5, Ogden, UT, USDA Forest Service Rocky Mountain Research Station, p. 328-335.
**Disclaimer: The views expressed in Non-USGS publications are those of the author and do not represent the views of the USGS, Department of the Interior, or the U.S. Government.
Wildlife Ecology and Conservation Biology Team (FRESC)
Wildlife respond to changes in their environment, some of which are dramatic and others subtle. To fully understand the factors that drive changes in populations and communities, we need better information on wildlife ecology in natural and human-altered landscapes. We conduct research and provide technical assistance to address applied questions about the ecology and conservation of wildlife...
Filter Total Items: 25
If you are unable to access or download a product, email fresc_outreach@usgs.gov a request, including the full citation, or call (541) 750-1030.
Filter Total Items: 28
No Result Found
If you are unable to access or download a product, email fresc_outreach@usgs.gov a request, including the full citation, or call (541) 750-1030.
To request an interview, contact fresc_outreach@usgs.gov or call (541) 750-1030.
Filter Total Items: 46
Science and Products
If you are unable to access or download a product, email fresc_outreach@usgs.gov a request, including the full citation, or call (541) 750-1030.
Filter Total Items: 137
A round-robin evaluation of the repeatability and reproducibility of environmental DNA assays for dreissenid mussels A round-robin evaluation of the repeatability and reproducibility of environmental DNA assays for dreissenid mussels
Resource managers may be hesitant to make decisions based on environmental (e)DNA results alone since eDNA is an indirect method of species detection. One way to reduce the uncertainty of eDNA is to identify laboratory‐based protocols that ensure repeatable and reproducible results. We conducted a double‐blind round‐robin analysis of probe‐based assays for DNA of dreissenid (Dreissena...
Authors
Adam Sepulveda, Patrick Hutchins, Craig Jackson, Carl Ostberg, Matthew Laramie, Jon Amberg, Timothy D. Counihan, Andrew Hoegh, David Pilliod
Reptiles under the conservation umbrella of the greater sage‐grouse Reptiles under the conservation umbrella of the greater sage‐grouse
In conservation paradigms, management actions for umbrella species also benefit co‐occurring species because of overlapping ranges and similar habitat associations. The greater sage‐grouse (Centrocercus urophasianus) is an umbrella species because it occurs across vast sagebrush ecosystems of western North America and is the recipient of extensive habitat conservation and restoration...
Authors
David S. Pilliod, Michelle Jeffries, Robert Arkle, Deanna H. Olson
Pre‐fire vegetation drives post‐fire outcomes in sagebrush ecosystems: Evidence from field and remote sensing data Pre‐fire vegetation drives post‐fire outcomes in sagebrush ecosystems: Evidence from field and remote sensing data
Understanding the factors that influence vegetation responses to disturbance is important because vegetation is the foundation of food resources, wildlife habitat, and ecosystem properties and processes. We integrated vegetation cover data derived from field plots and remotely sensed Landsat images in two focal areas over a 37‐yr period (1979–2016) to investigate how historical changes...
Authors
Brittany S. Barker, David Pilliod, Matthew Rigge, Collin Homer
Integration of eDNA-based biological monitoring within the US Geological Survey’s national streamgage network Integration of eDNA-based biological monitoring within the US Geological Survey’s national streamgage network
This study explores the feasibility and utility of integrating environmental DNA (eDNA) assessments of species occurrences into the United States (U.S.) Geological Survey’s national streamgage network. We used an existing network of five gages in southwest Idaho to explore the type of information that could be gained as well as the associated costs and limitations. Hydrologic technicians...
Authors
David Pilliod, Matthew Laramie, Dorene McCoy, Scott Maclean
Modeling long-term effects of fuel treatments on fuel loads and fire regimes in the Great Basin Modeling long-term effects of fuel treatments on fuel loads and fire regimes in the Great Basin
The principal motivation for this study is that sagebrush-steppe ecosystems are undergoing significant state changes, and land managers are challenged with optimizing their resources for both short- and long-term use. Yet, limited knowledge is available regarding how the sagebrush-steppe will respond to environmental changes related to precipitation and temperature regimes, and...
Authors
Nancy Glenn, Alejandro Flores, Douglas Shinneman, David S. Pilliod
Adding invasive species bio-surveillance to the U.S. Geological Survey streamgage network Adding invasive species bio-surveillance to the U.S. Geological Survey streamgage network
The costs of invasive species in the United States alone are estimated to exceed US$100 billion per year so a critical tactic in minimizing the costs of invasive species is the development of effective, early-detection systems. To this end, we evaluated the efficacy of adding environmental (e)DNA surveillance to the U.S. Geological Survey (USGS) streamgage network, which consists of > 8...
Authors
Adam Sepulveda, Christian Schmidt, Jon Amberg, Patrick Hutchins, Christian Stratton, Christopher Mebane, Matthew Laramie, David Pilliod
Transient population dynamics impede restoration and may promote ecosystem transformation after disturbance Transient population dynamics impede restoration and may promote ecosystem transformation after disturbance
The apparent failure of ecosystems to recover from increasingly widespread disturbance is a global concern. Despite growing focus on factors inhibiting resilience and restoration, we still know very little about how demographic and population processes influence recovery. Using inverse and forward demographic modelling of 531 post‐fire sagebrush populations across the western US, we show...
Authors
Robert Shriver, Caitlin Andrews, Robert Arkle, David Barnard, Michael Duniway, Matthew J. Germino, David Pilliod, David Pyke, Justin Welty, John Bradford
Soil characteristics are associated with gradients of big sagebrush canopy structure after disturbance Soil characteristics are associated with gradients of big sagebrush canopy structure after disturbance
Reestablishing shrub canopy cover after disturbance in semi-arid ecosystems, such as sagebrush steppe, is essential to provide wildlife habitat and restore ecosystem functioning. While several studies have explored the effects of landscape and climate factors on the success or failure of sagebrush seeding, the influence of soil properties on gradients of shrub canopy structure in...
Authors
David Barnard, Matthew J. Germino, Robert Arkle, John Bradford, Michael Duniway, David Pilliod, David Pyke, Robert Shriver, Justin Welty
Effects of climate change on habitat and connectivity for populations of a vulnerable, endemic salamander in Iran Effects of climate change on habitat and connectivity for populations of a vulnerable, endemic salamander in Iran
Habitat loss and fragmentation are among the biggest threats to amphibian populations and anthropogenic climate change may exacerbate these. The response of Iran's amphibians to climate change is uncertain and yet making an accurate prediction of how the species will respond is critical for conservation. We assessed how expected future climate scenarios before the years 2050 and 2070...
Authors
Mohammad Ashrafzadeh, Ali Naghipour, Maryam Haidarian, Szilvia Kusza, David Pilliod
The ecological uncertainty of wildfire fuel breaks: Examples from the sagebrush steppe The ecological uncertainty of wildfire fuel breaks: Examples from the sagebrush steppe
Fuel breaks are increasingly being implemented at broad scales (100s to 10,000s of square kilometers) in fire‐prone landscapes globally, yet there is little scientific information available regarding their ecological effects (eg habitat fragmentation). Fuel breaks are designed to reduce flammable vegetation (ie fuels), increase the safety and effectiveness of fire‐suppression operations...
Authors
Douglas Shinneman, Matthew J. Germino, David Pilliod, Cameron Aldridge, Nicole Vaillant, Peter Coates
Can’t see the random forest for the decision trees: Selecting predictive models for restoration ecology Can’t see the random forest for the decision trees: Selecting predictive models for restoration ecology
Improving predictions of restoration outcomes is increasingly important to resource managers for accountability and adaptive management, yet there is limited guidance for selecting a predictive model from the multitude available. The goal of this paper was to identify an optimal predictive framework for restoration ecology using eleven modeling frameworks (including, machine learning...
Authors
David Barnard, Matthew Germino, David Pilliod, Robert Arkle, Cara Applestein, Bill Davidson, Matthew Fisk
Identification of bees in southwest Idaho—A guide for beginners Identification of bees in southwest Idaho—A guide for beginners
This document was prepared to help scientists and the public, both of whom may not be familiar with bee taxonomy, learn how to practically identify bees in sagebrush steppe and shrubland habitats in southwest Idaho. We provide information to identify bees to the level of family and genus. A tentative list of the bee genera captured at sites used for insect community studies is included.
Authors
Emily Sun, David Pilliod
Non-USGS Publications**
Arkle, R.S., Pilliod, D.S., Strickler, K.M., 2010, Fire, flow and dynamic equilibrium in stream macroinvertebrate communities: Freshwater Biology, v. 55, p. 299-314.
Jain, T.B., Graham, R.T., Pilliod, D.S., 2006, The relation between forest structure and soil burn severity In Andrews, P.L., Butler, B.W., eds., Fuels management: How to measure success, Proceedings: RMRS-P-41, Fort Collins, CO, USDA Forest Service Rocky Mountain Research Station, p. 615-631.
Pilliod, D.S., Bull, E.L., Hayes, J.L., Wales, B.C., 2006, Wildlife and Invertebrate Response to Fuel Reduction Treatments in Dry Coniferous Forests of the Western United States - A Synthesis: USDA, Forest Service, Rocky Mountain Research Station RMRS-GTR-173, p. 34.
Hossack, B.R., Corn, P.S., Pilliod, D.S., 2005, Lack of significant changes in the herpetofauna of Theodore Roosevelt National Park, North Dakota, since the 1920s: American Midland Naturalist, v. 154, p. 423-432.
Funk, W., Blouin, M.S., Corn, P.S., Maxell, B.A., Pilliod, D.S., Amish, S., Allendorf, F.W., 2005, Population structure of Columbia spotted frogs (Rana luteiventris)is strongly affected by the landscape: Molecular Ecology, v. 14, p. 483-496.
Pilliod, D.S., 2005, The Wildlife Habitat Response Model- Environmental Consequences Fact Sheet - 15: USDA Rocky Mountain Research Station RMRS-RN-23-15-WWW, p. 2.
Dunham, J.B., Pilliod, D.S., Young, M., 2004, Assessing the Consequences of Nonnative Trout in Headwater Ecosystems in Western North America: Fisheries, v. 29, no. 6, p. 18-26, https://doi.org/http://dx.doi.org/10.1577/1548-8446(2004)29[18:ATCONT]2.0.CO;2.
Pilliod, D.S., 2004, Wildlife Responses to Fuels Treatments- Key Considerations - Fuels planning- science synthesis and integration; environmental consequences fact sheet 20024: USDA Rocky Mountain Research Station RMRS-RN-23-4WWW, p. 2.
Pilliod, D.S., Peterson, C.R., Ritson, P.I., 2002, Seasonal migration of Columbia spotted frogs (Rana luteiventris) among complementary resources in a high mountain basin: Canadian Journal of Zoology, v. 80, p. 1849-1862.
Peterson, C.R., Burton, S.R., Pilliod, D.S., Lee, J.R., Cossell Jr., J.O., Llewellyn, R.L., 2001, Assessing the accuracy of GAP analysis predicted distributions of Idaho amphibians and reptiles: GAP Analysis Bulletin, v. 10, p. 25-28.
Pilliod, D.S., Peterson, C.R., 2001, Local and landscape effects of introduced trout on amphibians in historically fishless watersheds: Ecosystems, v. 4, p. 322-333.
Pilliod, D.S., Peterson, C.R., 2000, Evaluating effects of fish stocking on amphibian populations in wilderness lakes In Cole, D.N., McCool, S.F., Borrie, W.T., O'Loughlin, J., eds., Wilderness science in a time of change conference—Volume 5: Wilderness ecosystems, threats, and management; 2000 May 23–27; Missoula, MT, Proceedings: RMRS-P-15_VOL-5, Ogden, UT, USDA Forest Service Rocky Mountain Research Station, p. 328-335.
**Disclaimer: The views expressed in Non-USGS publications are those of the author and do not represent the views of the USGS, Department of the Interior, or the U.S. Government.
Wildlife Ecology and Conservation Biology Team (FRESC)
Wildlife respond to changes in their environment, some of which are dramatic and others subtle. To fully understand the factors that drive changes in populations and communities, we need better information on wildlife ecology in natural and human-altered landscapes. We conduct research and provide technical assistance to address applied questions about the ecology and conservation of wildlife...
Filter Total Items: 25
If you are unable to access or download a product, email fresc_outreach@usgs.gov a request, including the full citation, or call (541) 750-1030.
Filter Total Items: 28
No Result Found
If you are unable to access or download a product, email fresc_outreach@usgs.gov a request, including the full citation, or call (541) 750-1030.
To request an interview, contact fresc_outreach@usgs.gov or call (541) 750-1030.
Filter Total Items: 46