I am a Research Ecologist with the U.S. Geological Survey's Western Fisheries Research Center, stationed in Seattle, Washington.
Research Interests:
My research assignment is to develop and execute a research program focused upon priorities of the USGS Ecosystems mission area, in particular those projects that address complex natural resource issues related to land use, habitat restoration, and species recovery. I have had the pleasure to work in diverse ecosystems and ecoregions throughout the United States, on lands and waters contained in both National Parks and military installations. I have also worked across a range of biological scales, from single species to entire communities.
Over the past decade, I have focused much attention on studying the ecological outcomes of dam removal, especially the historic project on the Elwha River. This involved removal of two long-standing dams, with a major goal of restoring the ecosystem and the native anadromous fish populations that once thrived in the river. Working with a multidisciplinary team within the USGS, as well as strong collaborations with partners like NPS, NOAA, FWS, and the Lower Elwha Klallam Tribe, we have developed a portfolio of long-term data sets on physical and biological attributes of the Elwha River before and after dam removal.
Recently I was a member of a dam removal science working group at the USGS John Wesley Powell Center for Analysis and Synthesis. We worked to understand patterns of dam removal science, and to synthesize what is known scientifically about this emerging field. This led to development of the USGS Dam Removal Information Portal, an interactive online tool for visualizing and storing scientific studies associated with dam removals nationwide.
Professional Experience
2004 to Present – Research Ecologist, U.S. Geological Survey, Western Fisheries Research Center, Seattle, WA
1998-2004 – Ecologist, U.S. Geological Survey, Western Fisheries Research Center, Seattle, WA
1993-1995 – Biological Technician, U.S. Army Corps of Engineers, Construction Engineering Research Laboratory
Education and Certifications
M.S. 1998. Biology, Wayne State University, Detroit, MI
B.S. 1993. Biology, Wayne State University, Detroit, MI
Affiliations and Memberships*
2015 to Present – Scientific Advisory Board, Mactaquac Aquatic Ecosystem Study
2012 to Present – Science Liaison, Board of Directors, Nature Bridge at Olympic National Park
1998 to Present – Ecological Society of America
2008 to Present – Northwest Scientific Association
2010 to Present – American Fisheries Society
Honors and Awards
2014 – NOAA Restoration Center, Excellence in Restoration Award
2013 – Northwest Scientific Association, Honorary Lifetime Membership Award
2011 – U.S. Department of the Interior, Superior Service Award
Science and Products
USGS science supporting the Elwha River Restoration Project
National Dam Removal Database: A living database for information on dying dams
Dam removal: synthesis of ecological and physical responses
Compilation of cost estimates for dam removal projects in the United States
Riverscape snorkeling surveys of salmonid distribution and abundance before (2007, 2008) and after (2018, 2019) dam removal on the Elwha River, Washington
Environmental DNA (eDNA) is an Effective Tool to Track Recolonizing Migratory Fish Following Large-Scale Dam Removal, field data
Ecological parameters in the Elwha River estuary before and during dam removal (ver. 2.0, August 2020)
Detection of invasive aquatic plants Myriophyllum spicatum and Egeria densa in lakes using eDNA, field and mesocosm data
USGS Dam Removal Science Database v4.0
2015 environmental DNA surveys for lampreys in Chehalis River tributaries, Washington
Data in support of 5-year sediment budget and morphodynamic analysis of Elwha River following dam removals
Concentrations of environmental DNA (eDNA) during sockeye salmon spawning in 2016, Hansen Creek, Alaska, USA
Distribution and seasonal differences in Pacific Lamprey and Lampetra spp eDNA across 18 Puget Sound watersheds, 2014 and 2015
Data collected in 2008-2014 to assess nearshore subtidal community response to increased sediment load during removal of the Elwha River dams, Washington State, USA

Leaf litter decomposition and detrital communities following the removal of two large dams on the Elwha River (Washington, USA)
Growth performance of Rainbow Trout in reservoir tributaries and implications for steelhead growth potential above Skagit River dams
Patterns, drivers, and a predictive model of dam removal cost in the United States
Given the burgeoning dam removal movement and the large number of dams approaching obsolescence in the United States, cost estimating data and tools are needed for dam removal prioritization, planning, and execution. We used the list of removed dams compiled by American Rivers to search for publicly available reported costs for dam removal projects. Total cost information could include component c
A decision-support framework for dam removal planning and its application in northern California
Toward a national eDNA strategy for the United States
Using eDNA metabarcoding to establish targets for freshwater fish composition following river restoration
Community and citizen science on the Elwha River: Past, present, and future
Reconnecting the Elwha River: Spatial patterns of fish response to dam removal
Dam removal and river restoration
Riverscape approaches in practice: Perspectives and applications
Shifting food web structure during dam removal—Disturbance and recovery during a major restoration action
Environmental DNA is an effective tool to track recolonizing migratory fish following large‐scale dam removal
Non-USGS Publications**
**Disclaimer: The views expressed in Non-USGS publications are those of the author and do not represent the views of the USGS, Department of the Interior, or the U.S. Government.
USGS Dam Removal Information Portal (DRIP)
A tool to explore trends about dam removal science and query scientific studies that evaluate environmental response to dam removals.
Dam Removal Information Portal Dashboard Python Dash Software
Science and Products
- Science
USGS science supporting the Elwha River Restoration Project
The Elwha River Restoration Project has reconnected the water, salmon, and sediment of a pristine river and coast of the Olympic Peninsula of Washington.National Dam Removal Database: A living database for information on dying dams
The United States has over 2 million dams on rivers and streams (Graf, 1999), and more than 84,000 of the larger dams are documented in the congressionally mandated National Inventory of Dams (U.S. Army Corps of Engineers, 2015). The average age of these National Inventory of Dams is 52 years; by the year 2030, over 80 percent will be at least 50 years old (American Society of Civil Engineers, 201Dam removal: synthesis of ecological and physical responses
Dam decommissioning is rapidly emerging as an important river restoration strategy in the U.S., with several major removals recently completed or in progress. But few studies have evaluated the far-reaching consequences of these significant environmental perturbations, especially those resulting from removals of large (>10-15 m tall) structures during the last decade. In particular, interactions b - Data
Compilation of cost estimates for dam removal projects in the United States
This dataset provides cost estimates for 668 dam removal projects occurring in the United States. Cost estimates were obtained by searching the internet for sources of information that mention the cost of dam removal projects listed in the USGS Dam Removal Information Portal. When cost data were not available for a dam removal but contact information was, then personal communications were used toRiverscape snorkeling surveys of salmonid distribution and abundance before (2007, 2008) and after (2018, 2019) dam removal on the Elwha River, Washington
We used snorkel surveys in the Elwha River, conducted in consecutive years before (2007, 2008) and after (2018, 2019) dam removal to assess changes in fish distribution and density. In total, we counted 54,616 Chinook Salmon, Bull Trout, Steelhead, and trout (Rainbow Trout and Coastal Cutthroat Trout combined) in 22 common reaches spanning 65 river kilometers. The occupancy of juvenile Chinook SalEnvironmental DNA (eDNA) is an Effective Tool to Track Recolonizing Migratory Fish Following Large-Scale Dam Removal, field data
We collected environmental DNA (eDNA) data from the Elwha River, home to the world?s largest dam removal project, to track the spatial and temporal patterns of species responses following dam removal. In total, we collected data for 11 different fish taxa, sampled at 25 sites ranging across 56 river kilometers in a wilderness river for 4 years following dam removal. We show that eDNA can effectiveEcological parameters in the Elwha River estuary before and during dam removal (ver. 2.0, August 2020)
The Elwha and Glines Canyon dams were removed from the Elwha River in Washington State from 2011 to 2014. We collected data for a variety of metrics in the estuary and on the river delta before (2006-2011) and during (2012-2014) dam removal to assess how increased sediment transport and deposition affected habitats, vegetation, invertebrates, and fish.Detection of invasive aquatic plants Myriophyllum spicatum and Egeria densa in lakes using eDNA, field and mesocosm data
We conducted a study to test the factors related to detectability of two invasive aquatic plants (Egeria densa and Myriophyllym spicatum) using environmental DNA (eDNA), over extended periods of time, and specifically examined how plant growth stage and abundance relates to eDNA detection in semi-natural and natural conditions. This dataset is from sampling performed in summer of 2018 in lakes witUSGS Dam Removal Science Database v4.0
This database is the result of an extensive literature search aimed at identifying documents relevant to the emerging field of dam removal science. In total the database contains 214 citations that contain empirical monitoring information associated with 181 different dam removals across the United States and abroad. Data includes publications through 2016 and supplemented with the U.S. Army Corps2015 environmental DNA surveys for lampreys in Chehalis River tributaries, Washington
Columns of data representing Chehalis River tributary, sample reach locations, dates of water sampling, quantitative PCR results, and whether lamprey were sampled by electrofishing in each sample reach. ***Please note that the title of this data release used to be "Environmental DNA surveys for lampreys in Chehalis River tributaries, Washington, from 2015 and 2017," but was updated for version 2.Data in support of 5-year sediment budget and morphodynamic analysis of Elwha River following dam removals
Two large dams were removed from the Elwha River in Washington, starting in 2011 and ending in 2014. The Elwha and the Glines Canyon dams were located approximately 7 km and 20 km upstream, respectively, from the Elwha River's mouth on the Strait of Juan de Fuca. The dams trapped over 20 million cubic meters of sediment. Dam removal changed the river's sediment budget and water flow, which affecteConcentrations of environmental DNA (eDNA) during sockeye salmon spawning in 2016, Hansen Creek, Alaska, USA
This dataset contains environmental DNA (eDNA) concentrations and spawning adult abundances for sockeye salmon (Oncorhynchus nerka) in Hansen Creek, a small tributary in the Wood River watershed, southeast Alaska, USA. We took temporally- and spatially-replicated eDNA samples during the spawning period (mid-July through August), along with fish counts (live, naturally dead, and killed), dissolvedDistribution and seasonal differences in Pacific Lamprey and Lampetra spp eDNA across 18 Puget Sound watersheds, 2014 and 2015
These data contain all the raw results needed to support the conclusions for the final product. These data are water sampling locations (latitude and longitude), date of water sampling, quantitative PCR values for each water sample, and stream flow at USGS stream gauging stations on sampling day.Data collected in 2008-2014 to assess nearshore subtidal community response to increased sediment load during removal of the Elwha River dams, Washington State, USA
Data are time series of substrate grain size, remotely sensed water column turbidity, and measures of abundance (e.g., density, percent cover) of the nearshore subtidal (3-17 m depth) benthic community (vegetation, invertebrates, and fish) collected before (2008-2011) and during dam removal (2012-2014). - Multimedia
Elwha River flows through newly vegetated areas of former Lake Mills reservoir 5 years after dam removal.
- Publications
Filter Total Items: 85
Leaf litter decomposition and detrital communities following the removal of two large dams on the Elwha River (Washington, USA)
Large-scale dam removals provide opportunities to restore river function in the long-term and are massive disturbances to riverine ecosystems in the short-term. The removal of two dams on the Elwha River (WA, USA) between 2011 and 2014 was the largest dam removal project to be completed by that time and has since resulted in major changes to channel dynamics, river substrates, in-stream communitieAuthorsCarri J. LeRoy, Sarah A. Morley, Jeffrey J. Duda, Alex A. Zinck, Paris J. Lamoureux, Cameron Pennell, Ali Bailey, Caitlyn Oswell, Mary Silva, Brandy K. Kamakawiwo’ole, Sorrel Hartford, Jacqueline Van Der Hout, Roger Peters, Rebecca Mahan, Justin Stapleton, Rachelle Carina Johnson, Melissa M. FoleyGrowth performance of Rainbow Trout in reservoir tributaries and implications for steelhead growth potential above Skagit River dams
ObjectiveIn the Pacific Northwest (USA), Pacific salmon Oncorhynchus spp. populations have been declining significantly for decades, prompting stakeholders to respond with a variety of conservation and restoration measures. One such measure being considered in the Skagit River basin (Washington, USA) is the introduction of steelhead Oncorhynchus mykiss (anadromous Rainbow Trout) above the impassabAuthorsBenjamin Lorenz Jensen, Rachelle Carina Johnson, Jeffrey J. Duda, Carl Ostberg, Tessa Julianne Code, Jonathan H Mclean, Karl D. Stenberg, Kimberly Larsen, Marshal Hoy, David BeauchampPatterns, drivers, and a predictive model of dam removal cost in the United States
Given the burgeoning dam removal movement and the large number of dams approaching obsolescence in the United States, cost estimating data and tools are needed for dam removal prioritization, planning, and execution. We used the list of removed dams compiled by American Rivers to search for publicly available reported costs for dam removal projects. Total cost information could include component c
AuthorsJeffrey J. Duda, Suman Jumani, Daniel J. Wieferich, Desiree D. Tullos, S. Kyle McKay, Timothy J. Randle, Alvin Jansen, Susan Bailey, Benjamin Lorenz Jensen, Rachelle Carina Johnson, Ella J. Wagner, Kyla Breanne Richards, Seth J. Wenger, Eric J. Walther, Jennifer A. BountryA decision-support framework for dam removal planning and its application in northern California
Dam removals are occurring more frequently with the rising cost of maintaining aging infrastructure, public safety concerns, and growing interest in river restoration. So far, most dam-removals have been unsystematic in their approach. Given the several thousand dam removals expected over the coming decades, a systematic approach to plan future dam removals holds potential for aligning and deliverAuthorsSuman Jumani, Lucy Andrews, Theodore E. Grantham, S. Kyle McKay, Jeffrey J. Duda, Jeanette K. HowardToward a national eDNA strategy for the United States
Environmental DNA (eDNA) data make it possible to measure and monitor biodiversity at unprecedented resolution and scale. As use-cases multiply and scientific consensus grows regarding the value of eDNA analysis, public agencies have an opportunity to decide how and where eDNA data fit into their mandates. Within the United States, many federal and state agencies are individually using eDNA data iAuthorsRyan Kelly, David M. Lodge, Kai Lee, Susanna Theroux, Adam J. Sepulveda, Chris Scholin, Joseph M. Craine, Elizabeth Allan, Krista M. Nichols, Kim M. Parsons, Kelly D Goodwin, Zachary Gold, Francisco P. Chavez, Rachel T. Noble, Cathryn Abbott, Melinda R. Baerwald, Amanda Naaum, Peter Thielen, Ariel Simons, Christopher L. Jerde, Jeffrey J. Duda, Margaret Hunter, John Hagan, Rachel Meyer, Joshua Steele, Mark Stoeckle, Holly Bik, Christopher Meyer, Eric D. Stein, Karen James, Austen Thomas, Elif Demir-Hilton, Molly Timmers, John Griffith, Michael J Weise, Steve WeisbergUsing eDNA metabarcoding to establish targets for freshwater fish composition following river restoration
Establishing realistic targets for fish community composition is needed to assess the effectiveness of river restoration projects. We used environmental DNA (eDNA) metabarcoding with MiFish primers to obtain estimates of fish community composition across 17 sites upstream, downstream and within a restoration mitigation project area (Kaihotsu–Kasumi) located in the Shigenobu River system, Ehime PreAuthorsGen Ito, Hiroshi Yamauchi, Miwa Shigeyoshi, Kousuke Ashino, Chie Yonashiro, Maki Asami, Yuko Goto, Jeffrey J. Duda, Hiroki YamanakaCommunity and citizen science on the Elwha River: Past, present, and future
This report reflects on the past, present, and potential future of community and citizen science (CCS) in the Elwha River watershed, with particular focus on the years before and after a major restoration event: the removal of two dams that had impacted the river system for a century. We ask: how does CCS feature in the Elwha story and how could it feature? We use the term CCS to reference the broAuthorsM. V. Eitzel, Sarah A. Morley, Chelsea Behymer, Ryan Meyer, Anna Kagley, Heidi L. Ballard, Christopher Jadallah, Jeffrey J. Duda, Laurel Jennings, Ian M. Miller, Justin Stapleton, Anne Shaffer, Allyce Miller, Patrick B. Shafroth, Barbara BlackieReconnecting the Elwha River: Spatial patterns of fish response to dam removal
The removal of two large dams on the Elwha River was completed in 2014 with a goal of restoring anadromous salmonid populations. Using observations from ongoing field studies, we compiled a timeline of migratory fish passage upstream of each dam. We also used spatially continuous snorkeling surveys in consecutive years before (2007, 2008) and after (2018, 2019) dam removal during summer baseflow tAuthorsJeffrey J. Duda, Christian E. Torgersen, Samuel J. Brenkman, Roger J. Peters, Kathryn T. Sutton, Heidi A. Connor, Philip R. Kennedy, Stephen C. Corbett, Ethan Z. Welty, Anna Geffre, Josh Geffre, Patrick Crain, Dave Shreffler, John R. McMillan, Mike McHenry, George R. PessDam removal and river restoration
The removal of dams from rivers has become a common and widespread practice in the United States and Europe. Although often initiated by factors like economics and safety, ecosystem restoration is often a desired benefit and outcome of dam removal. We describe the physical and ecological effects that the placement and removal of dams have on rivers. We then focus on the drivers of dam removal, preAuthorsJeffrey J. Duda, J. Ryan BellmoreRiverscape approaches in practice: Perspectives and applications
Landscape perspectives in riverine ecology have been undertaken increasingly in the last 30 years, leading aquatic ecologists to develop a diverse set of approaches for conceptualizing, mapping and understanding ‘riverscapes’. Spatiotemporally explicit perspectives of rivers and their biota nested within the socio-ecological landscape now provide guiding principles and approaches in inland fisheriAuthorsChristian E. Torgersen, Céline Le Pichon, Aimee H. Fullerton, Stephen J. Dugdale, Jeffrey J. Duda, Floriane Giovannini, Évelyne Tales, Jérôme Belliard, Paulo Branco, Normand E. Bergeron, Mathieu L. Roy, Diego Tonolla, Nicolas Lamouroux, Hervé Capra, Colden V. BaxterShifting food web structure during dam removal—Disturbance and recovery during a major restoration action
We measured food availability and diet composition of juvenile salmonids over multiple years and seasons before and during the world’s largest dam removal on the Elwha River, Washington State. We conducted these measurements over three sediment-impacted sections (the estuary and two sections of the river downstream of each dam) and compared these to data collected from mainstem tributaries not dirAuthorsSarah A. Morley, Melissa M Foley, Jeffrey J. Duda, Mathew M Beirne, Rebecca L Paradis, Rachelle Carina Johnson, Michael L. McHenry, Mel Elofson, Earnest M Sampson, Randall E McCoy, Justin Stapleton, George R. PessEnvironmental DNA is an effective tool to track recolonizing migratory fish following large‐scale dam removal
Environmental DNA (eDNA) has emerged as a potentially powerful tool for use in conservation and resource management, including for tracking the recolonization dynamics of fish populations. We used eDNA to assess the effectiveness of dam removal to restore fish passage on the Elwha River in Washington State (USA). Using a suite of 11 species‐specific eDNA polymerase chain reaction (PCR) assays, weAuthorsJeffrey J. Duda, Marshal Hoy, Dorothy M. Chase, George R. Pess, Samuel J. Brenkman, Michael M McHenry, Carl OstbergNon-USGS Publications**
Duda, J.J., and A.J. Krzysik. 1998. Radiotelemetry study of a desert tortoise population: Sand Hill Training Area, Marine Corps Air Ground Combat Center, Twentynine Palms, California. U.S. Army Construction Engineering Research Laboratories Technical Report 98/39. 75 p.Duda, J.J. 1998. Home range, burrow use, and activity patterns of the desert tortoise (Gopherus agassizii) in the south-central Mojave Desert. M.S. Thesis. Wayne State University, Detroit, MI, 60 p.**Disclaimer: The views expressed in Non-USGS publications are those of the author and do not represent the views of the USGS, Department of the Interior, or the U.S. Government.
- Web Tools
USGS Dam Removal Information Portal (DRIP)
A tool to explore trends about dam removal science and query scientific studies that evaluate environmental response to dam removals.
- Software
Dam Removal Information Portal Dashboard Python Dash Software
The Dam Removal Information Portal (DRIP) contains information about the geographic locations of dam removals and any associated scientific studies evaluating outcomes to physical, biological, and water quality parameters. This application uses Python DASH to help distribute and visualize information from the Dam Removal Information Portal API (DRIP API). - News
*Disclaimer: Listing outside positions with professional scientific organizations on this Staff Profile are for informational purposes only and do not constitute an endorsement of those professional scientific organizations or their activities by the USGS, Department of the Interior, or U.S. Government