Robert (Scott) Cornman, PhD
Scott Cornman is a Biologist at the Fort Collins Science Center.
(Robert) Scott Cornman is a Biologist at the Fort Collins Science Center. He received a Ph.D. in Genetics from the University of Georgia. He is a genomics specialist focusing on the application of SNPs, RNA-Seq, and barcode sequencing to organismal ecology and conservation.
Professional Experience
2015-present, Biologist, USGS FORT, Fort Collins, CO
2012-2015, Biologist, USGS LSC, Leetown, WV
2008-2012, Geneticist, USDA-ARS, Beltsville, MD
Education and Certifications
PhD Genetics/University of Georgia, 2006
B.A. History/Rice University, 1992
Science and Products
Filter Total Items: 32
Voucher and metagenetic sequencing of DNA barcodes of wild-collected bees (Apoidea) from Iowa, USA Voucher and metagenetic sequencing of DNA barcodes of wild-collected bees (Apoidea) from Iowa, USA
High-throughput methods for identification of pollinator taxa are desirable to improve our understanding of pollinator distributions, population trends, and ecology. Genetic sequencing of taxonomically informative 'barcode' loci is one high-throughput strategy, which can be applied to individual specimens using Sanger technology and to complex mixtures using metabarcoding technology...
Metabarcode sequencing of aquatic environmental DNA from the Potomac River Watershed, 2015-2020 Metabarcode sequencing of aquatic environmental DNA from the Potomac River Watershed, 2015-2020
Biological indicator taxa have long been used for integrative assessments of water quality, particularly benthic invertebrate groups such as arthropods. While standardized protocols have been developed to calculate 'biological index' scores based on the abundances of these taxa, such systems are challenging to implement at large scales due to the sampling effort required, taxonomic...
A reference genome assembly for the endangered Aga or Mariana Crow (Corvus kubaryi) A reference genome assembly for the endangered Aga or Mariana Crow (Corvus kubaryi)
The Aga, also known as the Mariana Crow, is an endangered endemic crow of the Northern Mariana Islands, a Commonwealth of the United States of America. The only known population currently extant is on the island of Rota and has been in decline over the past two decades. Unknown pathogens are among the factors that may be contributing to this decline. To support metagenomic and...
Genomic variation in the genus Pimephales: raw sequence data and single-nucleotide polymorphisms Genomic variation in the genus Pimephales: raw sequence data and single-nucleotide polymorphisms
The fathead minnow (Pimephales promelas) is a key model of vertebrate toxicity. Standardized tests of toxicity in fathead minnow have been developed to support regulatory science, and much is known about the response of the species to various environmental pollutants. However, there is little data on genetic variation within the species, despite the potential influence of genetic...
qPCR Results for An Assessment of Naegleria fowleri in Grand Teton National Park, Wyoming qPCR Results for An Assessment of Naegleria fowleri in Grand Teton National Park, Wyoming
In 2016, a multidisciplinary team from the U.S. Geological Survey Wyoming-Montana Water Science Center, National Park Service, The Centers for Disease Control and Prevention, and Montana State University’s Department of Microbiology and Immunology in cooperation with the Teton Conservation District, initiated a small study to document the presence or absence of Naegleria fowleri at...
Gene annotations for the hoary bat (Lasiurus [Aeorestes] cinereus) and alignments with other bat gene sets for evolutionary analysis Gene annotations for the hoary bat (Lasiurus [Aeorestes] cinereus) and alignments with other bat gene sets for evolutionary analysis
Bats of the genus Lasiurus occur throughout the Americas and have diversified into at least 20 species among three subgenera. The hoary bat (Lasiurus cinereus, or synonymously, Aeorestes cinereus) is highly migratory and ranges farther across North America than any other wild mammal. Despite the ecological importance of this species as a major insect predator, and the particular...
Hepatic Transcriptome of Japanese quail (Coturnix japonica) Exposed to 17B.-Trenbolone Hepatic Transcriptome of Japanese quail (Coturnix japonica) Exposed to 17B.-Trenbolone
The files in this data release are RNA seq datafiles from a study that examined the effects of the synthetic anabolic steroid 17B. hydroxyestra 4,9,11 trien-3-one, trenbolone (17B.T - CAS 10161-33-8), a common contaminant of wastes from confined animal feeding operations (CAFOs). Japanese quail (Coturnix japonica) were exposed in the egg and through feed to multiple doses of 17βT and...
Genetic variation in hoary bats (Lasiurus cinereus) assessed from archived samples Genetic variation in hoary bats (Lasiurus cinereus) assessed from archived samples
Hoary bats are among the bat species most commonly killed by turbine strikes in the midwestern United States. The impact of this mortality on species census size is not understood, due in part to the difficulty of estimating population size for this highly migratory and elusive species. Genetic effective population size (Ne) could provide an index of census population size if other...
Sample collection information and SNP data for Gunnison Sage-grouse across the species range generated in the Molecular Ecology Lab during 2015-2018 Sample collection information and SNP data for Gunnison Sage-grouse across the species range generated in the Molecular Ecology Lab during 2015-2018
This dataset contains sample collection information and SNP genotypes for populations of Gunnison Sage-grouse across the species' range. This data was collected in order to examine patterns of adaptive genetic variation in Gunnison Sage-grouse. The data is archived in GenBank at the following URL https://www.ncbi.nlm.nih.gov/bioproject/517770.
Taxonomic composition of environmental DNA acquired by filtration from the St. Regis River, New York Taxonomic composition of environmental DNA acquired by filtration from the St. Regis River, New York
Environmental DNA (eDNA) surveys have become important tools for monitoring aquatic biodiversity. Barcode sequencing of eDNA generates community profiles that, while potentially biased in both capture and amplification, can nonetheless yield high information content per unit cost. While factors affecting eDNA capture and amplification have been heavily studied, watershed-scale...
Rusty Patched Bumble Bee Pollen Metagenome Rusty Patched Bumble Bee Pollen Metagenome
The rusty-patched bumble bee (Bombus affinis) is a listed species under the Endangered Species Act of the United States. While understood to be a highly generalist forager, little is known on the role that limited floral resources or shifting floral community composition could have played in B. affinis decline. Determining which floral species provide suitable B. affinis forage could...
Effects of early life stage exposure of largemouth bass to atrazine or a model estrogen (17a-ethinylestradiol) Effects of early life stage exposure of largemouth bass to atrazine or a model estrogen (17a-ethinylestradiol)
Largemouth base histological development and transcriptomic changes in gonad tissue after early life stage exposure to Atrazine (1-Chloro-3-ethylamino-5-isopropylamino-2,4,6-triazine) or the model estrogen 17a-ethinylestradiol.
Filter Total Items: 54
Comparison of microscopy and metabarcoding to identify pollen used by the critically endangered rusty patched bumble bee, Bombus affinis Comparison of microscopy and metabarcoding to identify pollen used by the critically endangered rusty patched bumble bee, Bombus affinis
Taxonomic analysis of pollen collected by bees can provide insights into their host plant use, providing information about the plant species selected for targeted conservation strategies. The two main identification approaches used are morphological analysis of pollen samples affixed to microscope slides (i.e., microscopic palynology) and molecular analysis of samples. Both methods are...
Authors
Michael P. Simanonok, Deborah D. Iwanowicz, Clayton D. Raines, Thomas J. Wood, Rufus Isaacs, Robert S. Cornman, Clint Otto
Genome resequencing clarifies phylogeny and reveals patterns of selection in the toxicogenomics model Pimephales promelas Genome resequencing clarifies phylogeny and reveals patterns of selection in the toxicogenomics model Pimephales promelas
Background The fathead minnow (Pimephales promelas) is a model species for toxicological research. A high-quality genome reference sequence is available, and genomic methods are increasingly used in toxicological studies of the species. However, phylogenetic relationships within the genus remain incompletely known and little population-genomic data are available for fathead minnow...
Authors
Katy E. Klymus, Robert A. Hrabik, Nathan Thompson, Robert S. Cornman
Positively selected genes in the hoary bat (Lasiurus cinereus) lineage: Prominence of thymus expression, immune and metabolic function, and regions of ancient synteny Positively selected genes in the hoary bat (Lasiurus cinereus) lineage: Prominence of thymus expression, immune and metabolic function, and regions of ancient synteny
Background Bats of the genus Lasiurus occur throughout the Americas and have diversified into at least 20 species among three subgenera. The hoary bat (Lasiurus cinereus) is highly migratory and ranges farther across North America than any other wild mammal. Despite the ecological importance of this species as a major insect predator, and the particular susceptibility of lasiurine bats...
Authors
Robert S. Cornman, Paul M. Cryan
Influence of permafrost type and site history on losses of permafrost carbon after thaw Influence of permafrost type and site history on losses of permafrost carbon after thaw
We quantified permafrost peat plateau and post-thaw carbon (C) stocks across a chronosequence in Interior Alaska to evaluate the amount of C lost with thaw. Macrofossil reconstructions revealed three stratigraphic layers of peat: (1) a base layer of fen/marsh peat, (2) peat from a forested peat plateau (with permafrost) and, (3) collapse-scar bog peat (at sites where permafrost thaw has...
Authors
Kristen L. Manies, Miriam C. Jones, Mark Waldrop, Mary-Catherine Leewis, Christopher C. Fuller, Robert S. Cornman, Kristen Hoefke
Honey bee foraged pollen reveals temporal changes in pollen protein content and changes in forager choice for abundant versus high protein flowers Honey bee foraged pollen reveals temporal changes in pollen protein content and changes in forager choice for abundant versus high protein flowers
Protein derived from pollen is an essential component of healthy bee diets. Protein content in honey bee foraged-pollen varies temporally and spatially, but the drivers underlying this variation remain poorly characterized. We assessed the temporal and spatial variation in honey bee collected pollen in 12 Michigan apiaries over 3 summers (2015–2017). We simultaneously monitored forage in...
Authors
Gabriela Quinlan, Megan Milbrath, Clint Otto, Autumn Smart, Deborah D. Iwanowicz, Rufus Isaacs, Robert S. Cornman
Sex- and developmental stage-related differences in the hepatic transcriptome of Japanese quail (Coturnix japonica) exposed to 17β-Trenbolone Sex- and developmental stage-related differences in the hepatic transcriptome of Japanese quail (Coturnix japonica) exposed to 17β-Trenbolone
Endocrine-disrupting chemicals can cause transcriptomic changes that may disrupt biological processes associated with reproductive function including metabolism, transport, and cell growth. We investigated effects from in ovo and dietary exposure to 17β-trenbolone (at 0, 1, and 10 ppm) on the Japanese quail (Coturnix japonica) hepatic transcriptome. Our objectives were to identify...
Authors
Krittika Mittal, Paula F. P. Henry, Robert S. Cornman, Catherine M. Maddox, Niladri Basu, Natalie Karouna-Renier
Historical effective population size of North American hoary bat (Lasiurus cinereus) and challenges to estimating trends in contemporary effective breeding population size from archived samples Historical effective population size of North American hoary bat (Lasiurus cinereus) and challenges to estimating trends in contemporary effective breeding population size from archived samples
Background Hoary bats (Lasiurus cinereus) are among the bat species most commonly killed by wind turbine strikes in the midwestern United States. The impact of this mortality on species census size is not understood, due in part to the difficulty of estimating population size for this highly migratory and elusive species. Genetic effective population size (Ne) could provide an index of...
Authors
Robert S. Cornman, Jennifer A. Fike, Sara J. Oyler-McCance, Paul M. Cryan
Genome sequences of 26 white sucker hepatitis B virus isolates from white sucker, catostomus commersonii, inhabiting transboundary waters from Alberta, Canada, to the Great Lakes, USA Genome sequences of 26 white sucker hepatitis B virus isolates from white sucker, catostomus commersonii, inhabiting transboundary waters from Alberta, Canada, to the Great Lakes, USA
We report 26 genomes of the white sucker hepatitis B virus (WSHBV) from the white sucker, Catostomus commersonii. Genome length ranged from 3541 to 3543 bp and nucleotide identity was 96.7% or greater across genomes. This work suggests a geographical range of this virus that minimally extends from the Athabasca River, Alberta, Canada to the Great Lakes, USA.
Authors
Cynthia R. Adams, Vicki S. Blazer, Jim Sherry, Robert S. Cornman, Luke R. Iwanowicz
Composition and distribution of fish environmental DNA in an Adirondack watershed Composition and distribution of fish environmental DNA in an Adirondack watershed
Background Environmental DNA (eDNA) surveys are appealing options for monitoring aquatic biodiversity. While factors affecting eDNA persistence, capture and amplification have been heavily studied, watershed-scale surveys of fish communities and our confidence in such need further exploration.Methods We characterized fish eDNA compositions using rapid, low-volume filtering with replicate...
Authors
Robert S. Cornman, James E. McKenna, Jennifer A. Fike
Phylogeographic genetic diversity in the white sucker hepatitis B Virus across the Great Lakes Region and Alberta, Canada Phylogeographic genetic diversity in the white sucker hepatitis B Virus across the Great Lakes Region and Alberta, Canada
Hepatitis B viruses belong to a family of circular, double-stranded DNA viruses that infect a range of organisms, with host responses that vary from mild infection to chronic infection and cancer. The white sucker hepatitis B virus (WSHBV) was first described in the white sucker (Catostomus commersonii), a freshwater teleost, and belongs to the genus Parahepadnavirus. At present, the...
Authors
Cynthia R Adams, Vicki S. Blazer, Jim Sherry, Robert S. Cornman, Luke R. Iwanowicz
A century of pollen foraging by the endangered rusty patched bumble bee (Bombus affinis): Inferences from molecular sequencing of museum specimens A century of pollen foraging by the endangered rusty patched bumble bee (Bombus affinis): Inferences from molecular sequencing of museum specimens
In 2017 the rusty patched bumble bee (Bombus affinis) became the first bee listed under the Endangered Species Act in the continental United States due to population declines and an 87% reduction in the species’ distribution. Bombus affinis decline began in the 1990s, predating modern bee surveying initiatives, and obfuscating drivers of decline. While understood to be a highly...
Authors
Michael P. Simanonok, Clint Otto, Robert S. Cornman, Deborah D. Iwanowicz, James P. Strange, Tamara A. Smith
Effects of early life stage exposure of largemouth bass to atrazine or a model estrogen (17α-ethinylestradiol) Effects of early life stage exposure of largemouth bass to atrazine or a model estrogen (17α-ethinylestradiol)
Endocrine disrupting contaminants are of continuing concern for potentially contributing to reproductive dysfunction in largemouth and smallmouth bass in the Chesapeake Bay watershed (CBW) and elsewhere. Exposures to atrazine (ATR) have been hypothesized to have estrogenic effects on vertebrate endocrine systems. The incidence of intersex in male smallmouth bass from some regions of CBW...
Authors
Jessica Kristin Leet, Catherine A. Richter, Robert S. Cornman, Jason P. Berninger, Ramji K. Bhandari, Diane K. Nicks, James L. Zajicek, Vicki S. Blazer, Donald E. Tillitt
Science and Products
Filter Total Items: 32
Voucher and metagenetic sequencing of DNA barcodes of wild-collected bees (Apoidea) from Iowa, USA Voucher and metagenetic sequencing of DNA barcodes of wild-collected bees (Apoidea) from Iowa, USA
High-throughput methods for identification of pollinator taxa are desirable to improve our understanding of pollinator distributions, population trends, and ecology. Genetic sequencing of taxonomically informative 'barcode' loci is one high-throughput strategy, which can be applied to individual specimens using Sanger technology and to complex mixtures using metabarcoding technology...
Metabarcode sequencing of aquatic environmental DNA from the Potomac River Watershed, 2015-2020 Metabarcode sequencing of aquatic environmental DNA from the Potomac River Watershed, 2015-2020
Biological indicator taxa have long been used for integrative assessments of water quality, particularly benthic invertebrate groups such as arthropods. While standardized protocols have been developed to calculate 'biological index' scores based on the abundances of these taxa, such systems are challenging to implement at large scales due to the sampling effort required, taxonomic...
A reference genome assembly for the endangered Aga or Mariana Crow (Corvus kubaryi) A reference genome assembly for the endangered Aga or Mariana Crow (Corvus kubaryi)
The Aga, also known as the Mariana Crow, is an endangered endemic crow of the Northern Mariana Islands, a Commonwealth of the United States of America. The only known population currently extant is on the island of Rota and has been in decline over the past two decades. Unknown pathogens are among the factors that may be contributing to this decline. To support metagenomic and...
Genomic variation in the genus Pimephales: raw sequence data and single-nucleotide polymorphisms Genomic variation in the genus Pimephales: raw sequence data and single-nucleotide polymorphisms
The fathead minnow (Pimephales promelas) is a key model of vertebrate toxicity. Standardized tests of toxicity in fathead minnow have been developed to support regulatory science, and much is known about the response of the species to various environmental pollutants. However, there is little data on genetic variation within the species, despite the potential influence of genetic...
qPCR Results for An Assessment of Naegleria fowleri in Grand Teton National Park, Wyoming qPCR Results for An Assessment of Naegleria fowleri in Grand Teton National Park, Wyoming
In 2016, a multidisciplinary team from the U.S. Geological Survey Wyoming-Montana Water Science Center, National Park Service, The Centers for Disease Control and Prevention, and Montana State University’s Department of Microbiology and Immunology in cooperation with the Teton Conservation District, initiated a small study to document the presence or absence of Naegleria fowleri at...
Gene annotations for the hoary bat (Lasiurus [Aeorestes] cinereus) and alignments with other bat gene sets for evolutionary analysis Gene annotations for the hoary bat (Lasiurus [Aeorestes] cinereus) and alignments with other bat gene sets for evolutionary analysis
Bats of the genus Lasiurus occur throughout the Americas and have diversified into at least 20 species among three subgenera. The hoary bat (Lasiurus cinereus, or synonymously, Aeorestes cinereus) is highly migratory and ranges farther across North America than any other wild mammal. Despite the ecological importance of this species as a major insect predator, and the particular...
Hepatic Transcriptome of Japanese quail (Coturnix japonica) Exposed to 17B.-Trenbolone Hepatic Transcriptome of Japanese quail (Coturnix japonica) Exposed to 17B.-Trenbolone
The files in this data release are RNA seq datafiles from a study that examined the effects of the synthetic anabolic steroid 17B. hydroxyestra 4,9,11 trien-3-one, trenbolone (17B.T - CAS 10161-33-8), a common contaminant of wastes from confined animal feeding operations (CAFOs). Japanese quail (Coturnix japonica) were exposed in the egg and through feed to multiple doses of 17βT and...
Genetic variation in hoary bats (Lasiurus cinereus) assessed from archived samples Genetic variation in hoary bats (Lasiurus cinereus) assessed from archived samples
Hoary bats are among the bat species most commonly killed by turbine strikes in the midwestern United States. The impact of this mortality on species census size is not understood, due in part to the difficulty of estimating population size for this highly migratory and elusive species. Genetic effective population size (Ne) could provide an index of census population size if other...
Sample collection information and SNP data for Gunnison Sage-grouse across the species range generated in the Molecular Ecology Lab during 2015-2018 Sample collection information and SNP data for Gunnison Sage-grouse across the species range generated in the Molecular Ecology Lab during 2015-2018
This dataset contains sample collection information and SNP genotypes for populations of Gunnison Sage-grouse across the species' range. This data was collected in order to examine patterns of adaptive genetic variation in Gunnison Sage-grouse. The data is archived in GenBank at the following URL https://www.ncbi.nlm.nih.gov/bioproject/517770.
Taxonomic composition of environmental DNA acquired by filtration from the St. Regis River, New York Taxonomic composition of environmental DNA acquired by filtration from the St. Regis River, New York
Environmental DNA (eDNA) surveys have become important tools for monitoring aquatic biodiversity. Barcode sequencing of eDNA generates community profiles that, while potentially biased in both capture and amplification, can nonetheless yield high information content per unit cost. While factors affecting eDNA capture and amplification have been heavily studied, watershed-scale...
Rusty Patched Bumble Bee Pollen Metagenome Rusty Patched Bumble Bee Pollen Metagenome
The rusty-patched bumble bee (Bombus affinis) is a listed species under the Endangered Species Act of the United States. While understood to be a highly generalist forager, little is known on the role that limited floral resources or shifting floral community composition could have played in B. affinis decline. Determining which floral species provide suitable B. affinis forage could...
Effects of early life stage exposure of largemouth bass to atrazine or a model estrogen (17a-ethinylestradiol) Effects of early life stage exposure of largemouth bass to atrazine or a model estrogen (17a-ethinylestradiol)
Largemouth base histological development and transcriptomic changes in gonad tissue after early life stage exposure to Atrazine (1-Chloro-3-ethylamino-5-isopropylamino-2,4,6-triazine) or the model estrogen 17a-ethinylestradiol.
Filter Total Items: 54
Comparison of microscopy and metabarcoding to identify pollen used by the critically endangered rusty patched bumble bee, Bombus affinis Comparison of microscopy and metabarcoding to identify pollen used by the critically endangered rusty patched bumble bee, Bombus affinis
Taxonomic analysis of pollen collected by bees can provide insights into their host plant use, providing information about the plant species selected for targeted conservation strategies. The two main identification approaches used are morphological analysis of pollen samples affixed to microscope slides (i.e., microscopic palynology) and molecular analysis of samples. Both methods are...
Authors
Michael P. Simanonok, Deborah D. Iwanowicz, Clayton D. Raines, Thomas J. Wood, Rufus Isaacs, Robert S. Cornman, Clint Otto
Genome resequencing clarifies phylogeny and reveals patterns of selection in the toxicogenomics model Pimephales promelas Genome resequencing clarifies phylogeny and reveals patterns of selection in the toxicogenomics model Pimephales promelas
Background The fathead minnow (Pimephales promelas) is a model species for toxicological research. A high-quality genome reference sequence is available, and genomic methods are increasingly used in toxicological studies of the species. However, phylogenetic relationships within the genus remain incompletely known and little population-genomic data are available for fathead minnow...
Authors
Katy E. Klymus, Robert A. Hrabik, Nathan Thompson, Robert S. Cornman
Positively selected genes in the hoary bat (Lasiurus cinereus) lineage: Prominence of thymus expression, immune and metabolic function, and regions of ancient synteny Positively selected genes in the hoary bat (Lasiurus cinereus) lineage: Prominence of thymus expression, immune and metabolic function, and regions of ancient synteny
Background Bats of the genus Lasiurus occur throughout the Americas and have diversified into at least 20 species among three subgenera. The hoary bat (Lasiurus cinereus) is highly migratory and ranges farther across North America than any other wild mammal. Despite the ecological importance of this species as a major insect predator, and the particular susceptibility of lasiurine bats...
Authors
Robert S. Cornman, Paul M. Cryan
Influence of permafrost type and site history on losses of permafrost carbon after thaw Influence of permafrost type and site history on losses of permafrost carbon after thaw
We quantified permafrost peat plateau and post-thaw carbon (C) stocks across a chronosequence in Interior Alaska to evaluate the amount of C lost with thaw. Macrofossil reconstructions revealed three stratigraphic layers of peat: (1) a base layer of fen/marsh peat, (2) peat from a forested peat plateau (with permafrost) and, (3) collapse-scar bog peat (at sites where permafrost thaw has...
Authors
Kristen L. Manies, Miriam C. Jones, Mark Waldrop, Mary-Catherine Leewis, Christopher C. Fuller, Robert S. Cornman, Kristen Hoefke
Honey bee foraged pollen reveals temporal changes in pollen protein content and changes in forager choice for abundant versus high protein flowers Honey bee foraged pollen reveals temporal changes in pollen protein content and changes in forager choice for abundant versus high protein flowers
Protein derived from pollen is an essential component of healthy bee diets. Protein content in honey bee foraged-pollen varies temporally and spatially, but the drivers underlying this variation remain poorly characterized. We assessed the temporal and spatial variation in honey bee collected pollen in 12 Michigan apiaries over 3 summers (2015–2017). We simultaneously monitored forage in...
Authors
Gabriela Quinlan, Megan Milbrath, Clint Otto, Autumn Smart, Deborah D. Iwanowicz, Rufus Isaacs, Robert S. Cornman
Sex- and developmental stage-related differences in the hepatic transcriptome of Japanese quail (Coturnix japonica) exposed to 17β-Trenbolone Sex- and developmental stage-related differences in the hepatic transcriptome of Japanese quail (Coturnix japonica) exposed to 17β-Trenbolone
Endocrine-disrupting chemicals can cause transcriptomic changes that may disrupt biological processes associated with reproductive function including metabolism, transport, and cell growth. We investigated effects from in ovo and dietary exposure to 17β-trenbolone (at 0, 1, and 10 ppm) on the Japanese quail (Coturnix japonica) hepatic transcriptome. Our objectives were to identify...
Authors
Krittika Mittal, Paula F. P. Henry, Robert S. Cornman, Catherine M. Maddox, Niladri Basu, Natalie Karouna-Renier
Historical effective population size of North American hoary bat (Lasiurus cinereus) and challenges to estimating trends in contemporary effective breeding population size from archived samples Historical effective population size of North American hoary bat (Lasiurus cinereus) and challenges to estimating trends in contemporary effective breeding population size from archived samples
Background Hoary bats (Lasiurus cinereus) are among the bat species most commonly killed by wind turbine strikes in the midwestern United States. The impact of this mortality on species census size is not understood, due in part to the difficulty of estimating population size for this highly migratory and elusive species. Genetic effective population size (Ne) could provide an index of...
Authors
Robert S. Cornman, Jennifer A. Fike, Sara J. Oyler-McCance, Paul M. Cryan
Genome sequences of 26 white sucker hepatitis B virus isolates from white sucker, catostomus commersonii, inhabiting transboundary waters from Alberta, Canada, to the Great Lakes, USA Genome sequences of 26 white sucker hepatitis B virus isolates from white sucker, catostomus commersonii, inhabiting transboundary waters from Alberta, Canada, to the Great Lakes, USA
We report 26 genomes of the white sucker hepatitis B virus (WSHBV) from the white sucker, Catostomus commersonii. Genome length ranged from 3541 to 3543 bp and nucleotide identity was 96.7% or greater across genomes. This work suggests a geographical range of this virus that minimally extends from the Athabasca River, Alberta, Canada to the Great Lakes, USA.
Authors
Cynthia R. Adams, Vicki S. Blazer, Jim Sherry, Robert S. Cornman, Luke R. Iwanowicz
Composition and distribution of fish environmental DNA in an Adirondack watershed Composition and distribution of fish environmental DNA in an Adirondack watershed
Background Environmental DNA (eDNA) surveys are appealing options for monitoring aquatic biodiversity. While factors affecting eDNA persistence, capture and amplification have been heavily studied, watershed-scale surveys of fish communities and our confidence in such need further exploration.Methods We characterized fish eDNA compositions using rapid, low-volume filtering with replicate...
Authors
Robert S. Cornman, James E. McKenna, Jennifer A. Fike
Phylogeographic genetic diversity in the white sucker hepatitis B Virus across the Great Lakes Region and Alberta, Canada Phylogeographic genetic diversity in the white sucker hepatitis B Virus across the Great Lakes Region and Alberta, Canada
Hepatitis B viruses belong to a family of circular, double-stranded DNA viruses that infect a range of organisms, with host responses that vary from mild infection to chronic infection and cancer. The white sucker hepatitis B virus (WSHBV) was first described in the white sucker (Catostomus commersonii), a freshwater teleost, and belongs to the genus Parahepadnavirus. At present, the...
Authors
Cynthia R Adams, Vicki S. Blazer, Jim Sherry, Robert S. Cornman, Luke R. Iwanowicz
A century of pollen foraging by the endangered rusty patched bumble bee (Bombus affinis): Inferences from molecular sequencing of museum specimens A century of pollen foraging by the endangered rusty patched bumble bee (Bombus affinis): Inferences from molecular sequencing of museum specimens
In 2017 the rusty patched bumble bee (Bombus affinis) became the first bee listed under the Endangered Species Act in the continental United States due to population declines and an 87% reduction in the species’ distribution. Bombus affinis decline began in the 1990s, predating modern bee surveying initiatives, and obfuscating drivers of decline. While understood to be a highly...
Authors
Michael P. Simanonok, Clint Otto, Robert S. Cornman, Deborah D. Iwanowicz, James P. Strange, Tamara A. Smith
Effects of early life stage exposure of largemouth bass to atrazine or a model estrogen (17α-ethinylestradiol) Effects of early life stage exposure of largemouth bass to atrazine or a model estrogen (17α-ethinylestradiol)
Endocrine disrupting contaminants are of continuing concern for potentially contributing to reproductive dysfunction in largemouth and smallmouth bass in the Chesapeake Bay watershed (CBW) and elsewhere. Exposures to atrazine (ATR) have been hypothesized to have estrogenic effects on vertebrate endocrine systems. The incidence of intersex in male smallmouth bass from some regions of CBW...
Authors
Jessica Kristin Leet, Catherine A. Richter, Robert S. Cornman, Jason P. Berninger, Ramji K. Bhandari, Diane K. Nicks, James L. Zajicek, Vicki S. Blazer, Donald E. Tillitt