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Publications

This list of publications includes peer-review journal articles, official USGS publications series, reports and more authored by scientists in the Ecosystems Mission Area. A database of all USGS publications, with advanced search features, can be accessed at the USGS Publications Warehouse.  

Filter Total Items: 42871

Using paleo-archives to safeguard biodiversity under climate change Using paleo-archives to safeguard biodiversity under climate change

Strategies for 21st-century environmental management and conservation under global change require a strong understanding of the biological mechanisms that mediate responses to climate- and human-driven change to successfully mitigate range contractions, extinctions, and the degradation of ecosystem services. Biodiversity responses to past rapid warming events can be followed in situ and...
Authors
Damien A. Fordham, Stephen Jackson, Stuart C. Brown, Brian Huntley, Barry W. Brook, Dorthe Dahl-Jensen, M. Thomas P. Gilbert, Bette L. Otto-Bliesner, Anders Svensson, Spyros Theodoridis, Janet M. Wilmshurst, Jessie C. Buettel, Elisabetta Canteri, Matthew McDowell, Ludovic Orlando, Julia Pilowsky, Carsten Rahbek, David Nogues-Bravo

Calibrating environmental DNA metabarcoding to conventional surveys for measuring fish species richness Calibrating environmental DNA metabarcoding to conventional surveys for measuring fish species richness

The ability to properly identify species present in a landscape is foundational to ecology and essential for natural resource management and conservation. However, many species are often unaccounted for due to ineffective direct capture and visual surveys, especially in aquatic environments. Environmental DNA metabarcoding is an approach that overcomes low detection probabilities and...
Authors
Mary E McElroy, Terra L Dressler, Georgia C Titcomb, Emily A Wilson, Kristy Deiner, Tom L. Dudley, Erika J. Eliason, Nathan T Evans, Steven D Gaines, Kevin D. Lafferty, Gary A Lamberti, Yiyuan Li, David M. Lodge, Milton S. Love, Andrew R. Mahon, Michael E Pfrender, Mark A Renshaw, Kimberly A Selkoe, Christopher L. Jerde

Use of environmental DNA to detect grass carp spawning events Use of environmental DNA to detect grass carp spawning events

The timing and location of spawning events are important data for managers seeking to control invasive grass carp populations. Ichthyoplankton tows for grass carp eggs and larvae can be used to detect spawning events; however, these samples can be highly debris-laden, and are expensive and laborious to process. An alternative method, environmental DNA (eDNA) technology, has proven...
Authors
Cari-Ann Hayer, Michael F. Bayless, Amy E. George, Nathan Thompson, Catherine A. Richter, Duane Chapman

Changes in prey, turbidity, and competition reduce somatic growth and cause the collapse of a fish population Changes in prey, turbidity, and competition reduce somatic growth and cause the collapse of a fish population

Somatic growth exerts strong control on patterns in the abundance of animal populations via effects on maturation, fecundity, and survival rates of juveniles and adults. In this paper, we quantify abiotic and biotic drivers of rainbow trout growth in the Colorado River, AZ, and the resulting impact on spatial and temporal variation in abundance. Inferences are based on approximately 10...
Authors
Josh Korman, Michael D. Yard, Maria C. Dzul, Charles B. Yackulic, Michael J. Dodrill, Bridget R. Deemer, Theodore Kennedy

Spatiotemporal modeling of dengue fever risk in Puerto Rico Spatiotemporal modeling of dengue fever risk in Puerto Rico

Dengue Fever (DF) is a mosquito vector transmitted flavivirus and a reemerging global public health threat. Although several studies have addressed the relation between climatic and environmental factors and the epidemiology of DF, or looked at purely spatial or time series analysis, this article presents a joint spatio-temporal epidemiological analysis. Our approach accounts for both...
Authors
Gavino Puggioni, Jannelle Couret, Emily Serman, Ali S Akanda, Howard S. Ginsberg

Evidence of prevalent heat stress in Yukon River Chinook salmon Evidence of prevalent heat stress in Yukon River Chinook salmon

Migrating adult Pacific salmon (Oncorhynchus spp.) are sensitive to warm water (>18 °C), with a range of consequences from decreased spawning success to early mortality. We examined the proportion of Yukon River Chinook salmon (O. tshawytscha) exhibiting evidence of heat stress to assess the potential that high temperatures contribute to freshwater adult mortality in a northern Pacific...
Authors
Vanessa R. von Biela, Lizabeth Bowen, Stephen D. McCormick, Michael P. Carey, Daniel S. Donnelly, Shannon C. Waters-Dynes, Amy M. Regish, Sarah M. Laske, Randy J Brown, Sean Larson, Stan Zuray, Christian E. Zimmerman

Analysis of genomic sequence data reveals the origin and evolutionary separation of Hawaiian hoary bat populations Analysis of genomic sequence data reveals the origin and evolutionary separation of Hawaiian hoary bat populations

We examine the genetic history and population status of Hawaiian hoary bats (Lasiurus semotus), the most isolated bats on Earth, and their relationship to northern hoary bats (Lasiurus cinereus), through whole-genome analysis of single-nucleotide polymorphisms mapped to a de novo-assembled reference genome. Profiles of genomic diversity and divergence indicate that Hawaiian hoary bats...
Authors
Corinna A. Pinzari, Lin Kang, Pawel Michalak, Lars S Jermiin, Donald K Price, Frank Bonaccorso

Weed-suppressive bacteria effects differ in culture compared to in soils and with or without microbial competition and separation of active ingredient Weed-suppressive bacteria effects differ in culture compared to in soils and with or without microbial competition and separation of active ingredient

Weed-suppressive bacteria (WSB), specifically the D7 and ACK55 strains of Pseudomonas fluorescens, were previously reported to selectively inhibit growth of invasive annual grasses (IAGs) that have caused severe ecosystem degradation across much of the western US. However, recent studies show highly mixed evidence for WSB effectiveness in field settings. We evaluated how the...
Authors
Brynne E. Lazarus, Kevin Feris, Matthew Germino

Immune and sex-biased gene expression in the threatened Mojave desert tortoise, Gopherus agassizii Immune and sex-biased gene expression in the threatened Mojave desert tortoise, Gopherus agassizii

The immune system of ectotherms, particularly non-avian reptiles, remains poorly characterized regarding the genes involved in immune function, and their function in wild populations. We used RNA-Seq to explore the systemic response of Mojave desert tortoise (Gopherus agassizii) gene expression to three levels of Mycoplasma infection to better understand the host response to this...
Authors
Cindy Xu, Greer A. Dolby, K. Kristina Drake, Todd Esque, Kenro Kusumi

Genetic and environmental indicators of climate change vulnerability for desert bighorn sheep Genetic and environmental indicators of climate change vulnerability for desert bighorn sheep

Assessments of organisms’ vulnerability to potential climatic shifts are increasingly common. Such assessments are often conducted at the species level and focused primarily on the magnitude of anticipated climate change (i.e., climate exposure). However, wildlife management would benefit from population-level assessments that also incorporate measures of local or regional potential for...
Authors
Tyler G. Creech, Clinton W. Epps, John D. Wehausen, Rachel S. Crowhurst, Jef R. Jaeger, Kathleen Longshore, Brandon Holton, William B. Sloan, Ryan J. Monello

Acute and chronic toxicity of nickel and zinc to a laboratory cultured mayfly (Neocloeon triangulifer) in aqueous but fed exposures Acute and chronic toxicity of nickel and zinc to a laboratory cultured mayfly (Neocloeon triangulifer) in aqueous but fed exposures

Aquatic insects are poorly represented in water quality criteria, and previous studies have suggested a lack of sensitivity in acute toxicity tests despite observational studies demonstrating the contrary. Our objectives were to determine the toxicity of nickel (Ni) and zinc (Zn) to the mayfly Neocloeon triangulifer in fed acute (96-h) and chronic exposures to estimate aqueous effect
Authors
David J. Soucek, Amy Dickinson, Christan E. Schlekat, Eric Van Genderen, Edward J. Hammer

Spatial ecology and resource selection of eastern box turtles Spatial ecology and resource selection of eastern box turtles

Eastern box turtles (Terrapene carolina carolina) are widely distributed throughout the eastern United States. Although once common throughout much of its distribution, the species has experienced declines in local populations. Understanding resource selection is important for the conservation of this species; however, few data exist on resource selection for eastern box turtles in the
Authors
Katie A Harris, Joseph D. Clark, R. Dwayne Elmore, Craig A. Harper
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