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Publications

This list of publications includes peer-review journal articles, official USGS publications series, reports and more authored by scientists in the Ecosystems Mission Area. A database of all USGS publications, with advanced search features, can be accessed at the USGS Publications Warehouse.  

Filter Total Items: 42999

Distinguishing recent dispersal from historical genetic connectivity in the coastal California gnatcatcher Distinguishing recent dispersal from historical genetic connectivity in the coastal California gnatcatcher

Habitat loss and fragmentation are primary threats to biodiversity worldwide. We studied the impacts of habitat loss and fragmentation on genetic connectivity and diversity among local aggregations of the California gnatcatcher (Polioptila californica californica) across its U.S. range. With a dataset of 268 individuals genotyped at 19 microsatellite loci, we analyzed genetic structure...
Authors
Amy G. Vandergast, Barbara E. Kus, Kristine L. Preston, Kelly R. Barr

Element concentrations in tree swallows (Tachycineta bicolor) from the U.S. and Binational Great Lakes’ areas of concern Element concentrations in tree swallows (Tachycineta bicolor) from the U.S. and Binational Great Lakes’ areas of concern

Selected elements were targeted in state Remedial Action Plans as one group of chemicals affecting the Beneficial Use Impairments of Great Lakes Areas of Concern (AOC). Livers of nestling tree swallows, Tachycineta bicolor, were harvested from 76 sites in the Great Lakes which included multiple sites at 27 AOCs and 12 reference sites from 2010 to 2015 and analyzed for 21 elements...
Authors
Thomas W. Custer, Christine M. Custer, Paul M. Dummer, Diana R. Goldberg, J. Christian Franson

Predicting the initial spread of novel Asian origin influenza A viruses in the continental USA by wild waterfowl Predicting the initial spread of novel Asian origin influenza A viruses in the continental USA by wild waterfowl

Using data on waterfowl band recoveries, we identified spatially explicit hotspots of concentrated waterfowl movement to predict occurrence and spatial spread of a novel influenza A virus (clade 2.3.4.4) introduced from Asia by waterfowl from an initial outbreak in North America in November 2014. In response to the outbreak, the hotspots of waterfowl movement were used to help guide...
Authors
Alan B. Franklin, Sarah N. Bevins, Jeremy W. Ellis, Ryan S. Miller, Susan A. Shriner, J. Jeffrey Root, Daniel P. Walsh, Thomas J. DeLiberto

Freshwater tidal forests and estuarine wetlands may confer early life growth advantages for delta-reared Chinook Salmon Freshwater tidal forests and estuarine wetlands may confer early life growth advantages for delta-reared Chinook Salmon

Large river deltas are complex ecosystems that are believed to play a pivotal role in promoting the early marine growth and survival of threatened Chinook Salmon Oncorhynchus tshawytscha. We used a fish bioenergetics model to assess the functional role of multiple delta habitats across a gradient of salinities and vegetation types, where consumption and growth rate potential (GRP) were...
Authors
Melanie J. Davis, Isa Woo, Christopher S. Ellings, Sayre Hodgson, David A. Beauchamp, Glynnis Nakai, Susan E.W. De La Cruz

Field diagnostics and seasonality of Ophidiomyces ophiodiicola in wild snake populations Field diagnostics and seasonality of Ophidiomyces ophiodiicola in wild snake populations

Snake fungal disease (SFD) is an emerging disease caused by the fungal pathogen, Ophidiomyces ophiodiicola. Clinical signs of SFD include dermal lesions, including regional and local edema, crusts, and ulcers. Snake fungal disease is widespread in the Eastern United States, yet there are limited data on how clinical signs of SFD compare with laboratory diagnostics. We compared two...
Authors
Jennifer M. McKenzie, Steven J. Price, J. Leo Fleckenstein, Andrea N. Drayer, Grant M. Connette, Elizabeth A. Bohuski, Jeffrey M. Lorch

Assessment of bird exposure to lead at Tyndall and Beale Air Force Bases, 2016–17 Assessment of bird exposure to lead at Tyndall and Beale Air Force Bases, 2016–17

Soil contamination by lead (Pb) from past small munitions training on Beale Air Force Base, California, and Tyndall Air Force Base, Florida, may result in adverse effects for passerine birds that utilize the locations. A study was conducted during 2016-17 by the U.S. Geological Survey, in cooperation with the U.S. Fish and Wildlife Service and U.S. Air Force, at both Air Force Bases...
Authors
Timothy A. Bargar

POLARIS properties: 30-meter probabilistic maps of soil properties over the contiguous United States POLARIS properties: 30-meter probabilistic maps of soil properties over the contiguous United States

Soils play a critical role in the cycling of water, energy, and carbon in the Earth system. Until recently, due primarily to a lack of soil property maps of a sufficiently high‐quality and spatial detail, a minor emphasis has been placed on providing high‐resolution measured soil parameter estimates for land surface models and hydrologic models. This study introduces Probabilistic...
Authors
Nathaniel W. Chaney, Budiman Minasny, Jonathan D. Herman, Travis W. Nauman, Colby W. Brungard, Cristine L. S. Morgan, Alexander B. McBratney, Eric F. Wood, Yohannes Yimam

Long-term suppression of the Lake Trout (Salvelinus namaycush) population in Lake Pend Oreille, Idaho Long-term suppression of the Lake Trout (Salvelinus namaycush) population in Lake Pend Oreille, Idaho

A simulation model of lake trout Salvelinus namaycush (Walbaum 1792) population dynamics in Lake Pend Oreille, Idaho, was used to estimate (1) the optimal allocation of effort among gillnet mesh sizes that minimizes abundance in the shortest time; (2) the number of years needed to suppress the population to 90% of peak abundance; and (3) once suppressed, how much effort could be reduced...
Authors
Michael J. Hansen, Matthew P. Corsi, Andrew M. Dux

In situ evaluation of benthic suffocation methods for suppression of invasive Lake Trout embryos in Yellowstone Lake In situ evaluation of benthic suffocation methods for suppression of invasive Lake Trout embryos in Yellowstone Lake

Suppression of invasive Lake Trout Salvelinus namaycush is an important management tool to use in native fish and ecosystem conservation throughout the U.S. Intermountain West. Lake Trout suppression, primarily by gill netting, has been ongoing in Yellowstone Lake, Yellowstone National Park, Wyoming, since 1995. Additional methods that cause mortality of Lake Trout embryos could be used
Authors
Nathan A. Thomas, Christopher S. Guy, Todd M. Koel, Alexander V. Zale

Response to “Prepublication communication of research results”: The need for a coordinated wildlife disease surveillance laboratory network Response to “Prepublication communication of research results”: The need for a coordinated wildlife disease surveillance laboratory network

In “Prepublication Communication of Research Results”, Adams et al. (2018) outline the importance of timeliness in providing scientific results with consequential implications for wildlife management to responsible government agencies. The authors discuss various impediments to sharing of scientific results and provide well-reasoned arguments why scientists should not fear that sharing...
Authors
Jonathan M. Sleeman, David S. Blehert, Katherine L. D. Richgels, C. LeAnn White

Demographic responses of least terns and piping plovers to the 2011 Missouri River flood—A large-scale case study Demographic responses of least terns and piping plovers to the 2011 Missouri River flood—A large-scale case study

A catastrophic flood event on the Missouri River system in 2011 led to substantial changes in abundance and distribution of unvegetated sand habitat. This river system is a major component of the breeding range for interior Least terns (Sternula antillarum; “terns”) and piping plovers (Charadrius melodus; “plovers”), both of which are Federally listed ground-nesting birds that prefer...
Authors
Michael J. Anteau, Mark H. Sherfy, Terry L. Shaffer, Rose J. Swift, Dustin L. Toy, Colin M. Dovichin

Explaining harvests of wild-harvested herbaceous plants: American ginseng as a case study Explaining harvests of wild-harvested herbaceous plants: American ginseng as a case study

Wild-harvested plants face increasing demand globally. As in many fisheries, monitoring the effect of harvesting on the size and trajectory of resource stocks presents many challenges given often limited data from disparate sources. Here we analyze American ginseng (Panax quinquefolius L.) harvests from 18 states in the eastern U.S. 1978–2014 to infer temporal patterns and evidence of...
Authors
John Paul Schmidt, Jennifer Cruse-Sanders, James L. Chamberlain, Susana Ferreira, John A. Young
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