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Publications

This list of publications includes peer-review journal articles, official USGS publications series, reports and more authored by scientists in the Ecosystems Mission Area. A database of all USGS publications, with advanced search features, can be accessed at the USGS Publications Warehouse.  

Filter Total Items: 42884

An integrated population model for greater Sage-Grouse (Centrocercus urophasianus) in the bi-state distinct population segment, California and Nevada, 2003–17 An integrated population model for greater Sage-Grouse (Centrocercus urophasianus) in the bi-state distinct population segment, California and Nevada, 2003–17

The Bi-State Distinct Population Segment (DPS) of greater sage-grouse (Centrocercus urophasianus, hereinafter “sage-grouse”) occupies parts of Alpine, Mono, and Inyo Counties in California, and parts of Douglas, Esmeralda, Lyon, Carson City, and Mineral Counties in Nevada and was proposed for listing as threatened under the Endangered Species Act (ESA) by the U.S. Fish and Wildlife...
Authors
Steven R. Mathews, Peter S. Coates, Brian G. Prochazka, Mark A. Ricca, Mary B. Meyerpeter, Shawn P. Espinosa, Sherri Lisius, Scott C. Gardner, David J. Delehanty

Characterizing toxicity of metal‐contaminated sediments from the Upper Columbia River, Washington, USA, to benthic invertebrates Characterizing toxicity of metal‐contaminated sediments from the Upper Columbia River, Washington, USA, to benthic invertebrates

Sediments from the Upper Columbia River, Washington, USA, are contaminated with metals from smelting operations. We conducted short‐term and long‐term tests with the midge Chironomus dilutus and the amphipod Hyalella azteca and short‐term tests with the freshwater mussel Lampsilis siliquoidea with 54 sediments from the Upper Columbia River to characterize thresholds for toxicity of...
Authors
John M. Besser, Jeffery A. Steevens, James L. Kunz, William G. Brumbaugh, Christopher G. Ingersoll, Stephen E. Cox, Christopher A. Mebane, Laurie S. Balistrieri, Jesse A. Sinclair, Donald D. MacDonald

Population viability analyses for three Macrhybopsis spp. of the Lower Missouri River Population viability analyses for three Macrhybopsis spp. of the Lower Missouri River

Recent declines in three species of chubs that inhabit the lower Missouri River (shoal chub M. hyostoma, sicklefin chub M. meeki and sturgeon chub M. gelida) have become a concern in the management of their own populations and the endangered pallid sturgeon (Scaphirhynchus albus) that feeds on them. These chub populations encounter threats from fish predation and habitat loss. With the...
Authors
Janice L. Albers, Mark L. Wildhaber, Nicholas S. Green

Effects of transmitter type, tagging method, body size, and temperature on behavior, physiology, and swimming performance of juvenile Chinook salmon (Oncorhynchus tshawytscha) Effects of transmitter type, tagging method, body size, and temperature on behavior, physiology, and swimming performance of juvenile Chinook salmon (Oncorhynchus tshawytscha)

The objective of this study was to assess the impact of different tagging methods and transmitter types on juvenile salmonid behavior, mortality, physiology, and swimming performance over a range of water temperatures and fish sizes. In Chapter 1, two laboratory experiments were conducted to assess maximum burst-swimming speeds, the probability of gulping air, swimming angles, and the...

Pulsed salmonfly emergence and its potential contribution to terrestrial detrital pools Pulsed salmonfly emergence and its potential contribution to terrestrial detrital pools

Adult aquatic insects are a globally important subsidy in terrestrial food webs. However, our understanding of their importance is largely limited to studies that measure predation of live insects by terrestrial predators. Yet the flux of adult aquatic insects to terrestrial detrital pools may also be an important subsidy pathway, particularly in cases where insect production exceeds the
Authors
Jeff Wesner, David Walters, Robert E. Zuellig

Impacts of nonnative Brown Trout on Yellowstone Cutthroat Trout in a tributary stream Impacts of nonnative Brown Trout on Yellowstone Cutthroat Trout in a tributary stream

Nonnative trout are a considerable threat to native salmonids, yet our understanding of the mechanisms behind interspecific interactions remains limited. We evaluated the impacts of nonnative Brown Trout Salmo salar on a population of Yellowstone Cutthroat Trout Oncorhynchus clarkii bouvieri in Montana. We contrasted diets, growth, and survival of Yellowstone Cutthroat Trout occurring in...
Authors
Robert K. Al-Chokhachy, Adam J. Sepulveda

New global high-resolution centerlines dataset of selected river systems New global high-resolution centerlines dataset of selected river systems

We present the first high resolution (1:20,000) river centerlines shapefiles from 50 large rivers across the world. Rivers were selected based on the criteria of having more than 1000 km length and which have been reported to have a significant contribution to global fishery production. Since large rivers often span multiple countries, the degree of changes (i.e., anthropogenic or...
Authors
Zeenatul Basher, Abigail Lynch, William W. Taylor

Probability of streamflow permanence model (PROSPER): A spatially continuous model of annual streamflow permanence throughout the Pacific Northwest Probability of streamflow permanence model (PROSPER): A spatially continuous model of annual streamflow permanence throughout the Pacific Northwest

The U.S. Geological Survey (USGS) has developed the PRObability of Streamflow PERmanence (PROSPER) model, a GIS raster-based empirical model that provides streamflow permanence probabilities (probabilistic predictions) of a stream channel having year-round flow for any unregulated and minimally-impaired stream channel in the Pacific Northwest region, U.S. The model provides annual...
Authors
Kristin Jaeger, Roy Sando, Ryan R. McShane, Jason B. Dunham, David Hockman-Wert, Kendra E. Kaiser, Konrad Hafen, John Risley, Kyle W. Blasch

Quantifying effects of deer browsing on vegetation establishment, growth and development in large-extent overwash fans Quantifying effects of deer browsing on vegetation establishment, growth and development in large-extent overwash fans

Hurricane Sandy provided a unique opportunity to better understand the potential effects of white-tailed deer (Odocoileus virginianus borealis) on recovering vegetation in areas overwashed by Hurricane Sandy in the Otis Pike Fire Island High Dune Wilderness Area. White-tailed deer are the dominant herbivore on Fire Island and they are known to decrease plant diversity, limit reproduction...
Authors
Chellby R. Kilheffer, Lindsay Reis, Jordan Raphael, H. Brian Underwood

What environmental conditions reduce predation vulnerability for juvenile Colorado River native fishes? What environmental conditions reduce predation vulnerability for juvenile Colorado River native fishes?

The incompatibility of native Colorado River fishes and nonnative warm-water sport fishes is well documented with predation by nonnative species causing rapid declines and even extirpation of native species in most locations. In a few rare instances native fishes are able to survive and recruit despite the presence of nonnative warm water predators, indicating that specific environmental
Authors
David L. Ward, Benjamin Vaage

An experimental comparison of composite and grab sampling of stream water for metagenetic analysis of environmental DNA An experimental comparison of composite and grab sampling of stream water for metagenetic analysis of environmental DNA

Use of environmental DNA (eDNA) to assess distributions of aquatic and semi-aquatic macroorganisms is promising, but sampling schemes may need to be tailored to specific objectives. Given the potentially high variance in aquatic eDNA among replicate grab samples, compositing smaller water volumes collected over a period of time may be more effective for some applications. In this study...
Authors
Robert S. Cornman, James E. McKenna, Jennifer A. Fike, Sara J. Oyler-McCance, Robin Johnson

Waterfowl spring migratory behavior and avian influenza transmission risk in the changing landscape of the East Asian-Australasian Flyway Waterfowl spring migratory behavior and avian influenza transmission risk in the changing landscape of the East Asian-Australasian Flyway

Avian influenza has advanced from a regional concern to a global health issue with significant economic, trade, and public health implications. Wild birds, particularly waterfowl (Anseriformes), are known reservoirs for low-pathogenic avian influenza viruses (AIV) and recent studies have shown their potential in the spread of highly pathogenic forms of virus. East Asia remains an...
Authors
Jeffery D. Sullivan, John Y. Takekawa, Kyle A. Spragens, Scott H. Newman, Xiangming Xiao, Paul J. Leader, Bena Smith, Diann J. Prosser
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