Publications
This list of publications includes peer-review journal articles, official USGS publications series, reports and more authored by scientists in the Ecosystems Mission Area. A database of all USGS publications, with advanced search features, can be accessed at the USGS Publications Warehouse.
Filter Total Items: 42715
Prevalence and distribution of Wellfleet Bay virus exposure in the Common Eider (Somateria mollissima) Prevalence and distribution of Wellfleet Bay virus exposure in the Common Eider (Somateria mollissima)
Between 1998 and 2014, recurrent mortality events were reported in the Dresser's subspecies of the Common Eider (Somateria mollissima dresseri) on Cape Cod, Massachusetts, USA near Wellfleet Harbor. The early die-offs were attributed to parasitism and emaciation, but beginning in 2006 a suite of distinct lesions was observed concomitant with the isolation of a previously unknown RNA...
Authors
Jennifer R. Ballard, Randall M. Mickley, Samantha E.J. Gibbs, Chris P. Dwyer, Catherine Soos, N. Jane Harms, H. Grant Gilchrist, Jeffrey S. Hall, J. Christian Franson, G. Randy Milton, Glen Parsons, Brad Allen, Jean-Francois Giroux, Stephane Lair, Daniel G. Mead, John R. Fischer
A refined electrofishing technique for collecting Silver Carp: Implications for management A refined electrofishing technique for collecting Silver Carp: Implications for management
Detecting nuisance species at low abundance or in newly established areas is critical to developing pest management strategies. Due to their sensitivity to disturbance and erratic jumping behavior, Silver Carp Hypophthalmichthys molitrix can be difficult to collect with traditional sampling methods. We compared catch per unit effort (CPUE) of all species from a Long Term Resource...
Authors
Wesley W. Bouska, David C. Glover, Kristen L. Bouska, James E. Garvey
Susceptibility and antibody response of the laboratory model zebra finch (Taeniopygia guttata) to West Nile Virus Susceptibility and antibody response of the laboratory model zebra finch (Taeniopygia guttata) to West Nile Virus
Since the introduction of West Nile virus (WNV) into North America in 1999 a number of passerine bird species have been found to play a role in the amplification of the virus. Arbovirus surveillance, observational studies and experimental studies have implicated passerine birds (songbirds, e.g., crows, American robins, house sparrows, and house finches) as significant reservoirs of WNV...
Authors
Erik K. Hofmeister, Melissa Lund, Valerie I. Shearn-Bochsler, Christopher N. Balakrishnan
Estimating the settling velocity of bioclastic sediment using common grain-size analysis techniques Estimating the settling velocity of bioclastic sediment using common grain-size analysis techniques
Most techniques for estimating settling velocities of natural particles have been developed for siliciclastic sediments. Therefore, to understand how these techniques apply to bioclastic environments, measured settling velocities of bioclastic sedimentary deposits sampled from a nearshore fringing reef in Western Australia were compared with settling velocities calculated using results...
Authors
Michael V. W. Cuttler, Ryan J. Lowe, James L. Falter, Daniel D. Buscombe
Shallow water benthic imaging and substrate characterization using recreational-grade sidescan-sonar Shallow water benthic imaging and substrate characterization using recreational-grade sidescan-sonar
In recent years, lightweight, inexpensive, vessel-mounted ‘recreational grade’ sonar systems have rapidly grown in popularity among aquatic scientists, for swath imaging of benthic substrates. To promote an ongoing ‘democratization’ of acoustical imaging of shallow water environments, methods to carry out geometric and radiometric correction and georectification of sonar echograms are...
Authors
Daniel D. Buscombe
Climatic controls on the global distribution, abundance, and species richness of mangrove forests Climatic controls on the global distribution, abundance, and species richness of mangrove forests
Mangrove forests are highly productive tidal saline wetland ecosystems found along sheltered tropical and subtropical coasts. Ecologists have long assumed that climatic drivers (i.e., temperature and rainfall regimes) govern the global distribution, structure, and function of mangrove forests. However, data constraints have hindered the quantification of direct climate-mangrove linkages...
Authors
Michael J. Osland, Laura C. Feher, Kereen Griffith, Kyle C. Cavanaugh, Nicholas M. Enwright, Richard H. Day, Camille L. Stagg, Ken W. Krauss, Rebecca J. Howard, James B. Grace, Kerrylee Rogers
Pinyon and juniper encroachment into sagebrush ecosystems impacts distribution and survival of greater sage-grouse Pinyon and juniper encroachment into sagebrush ecosystems impacts distribution and survival of greater sage-grouse
In sagebrush (Artemisia spp.) ecosystems, encroachment of pinyon (Pinus spp.) and juniper (Juniperus spp.; hereafter, “pinyon-juniper”) trees has increased dramatically since European settlement. Understanding the impacts of this encroachment on behavioral decisions, distributions, and population dynamics of greater sage-grouse (Centrocercus urophasianus) and other sagebrush obligate...
Authors
Peter S. Coates, Brian G. Prochazka, Mark A. Ricca, K. Benjamin Gustafson, Pilar T. Ziegler, Michael L. Casazza
Forest restoration at Redwood National Park: Exploring prescribed fire alternatives to second-growth management: A case study Forest restoration at Redwood National Park: Exploring prescribed fire alternatives to second-growth management: A case study
Almost half of Redwood National Park is comprised of second-growth forests characterized by high stand density, deficient redwood composition, and low understory biodiversity. Typical structure of young redwood stands impedes the recovery of old-growth conditions, such as dominance of redwood (Sequoia sempervirens (D. Don) Endl.), distinct canopy layers and diverse understory vegetation...
Authors
Eamon Engber, Jason Teraoka, Phillip J. van Mantgem
No substitute for survival: Perturbation analyses using a Golden Eagle population model reveal limits to managing for take No substitute for survival: Perturbation analyses using a Golden Eagle population model reveal limits to managing for take
Conserving populations of long-lived birds of prey, characterized by a slow life-history (e.g., high survival and low reproductive output), requires a thorough understanding of how variation in their vital rates differentially affects population growth. Stochastic population modeling provides a framework for exploring variation in complex life histories to better understand how...
Authors
Jason D. Tack, Barry R. Noon, Zachary H. Bowen, Lauren Strybos, Bradley C. Fedy
Molecular detection of avian influenza virus from sediment samples in waterfowl habitats on the Delmarva Peninsula, United States Molecular detection of avian influenza virus from sediment samples in waterfowl habitats on the Delmarva Peninsula, United States
Avian influenza viruses (AIV) affect many species of birds including waterfowl and may persist in sediment in aquatic habitats. Sediment samples were collected from two areas representative of prime migration and overwintering waterfowl habitat in Dorchester County, Maryland in the fall and winter of 2013–2014. Samples were screened for the presence of AIV via reverse transcriptase...
Authors
Christine L. Densmore, Deborah D. Iwanowicz, Christopher Ottinger, Larry J. Hindman, Amanda Bessler, Luke R. Iwanowicz, Diann J. Prosser, Matt Whitbeck, Cindy P. Driscoll
Unifying population and landscape ecology with spatial capture-recapture Unifying population and landscape ecology with spatial capture-recapture
Spatial heterogeneity in the environment induces variation in population demographic rates and dispersal patterns, which result in spatio‐temporal variation in density and gene flow. Unfortunately, applying theory to learn about the role of spatial structure on populations has been hindered by the lack of mechanistic spatial models and inability to make precise observations of population...
Authors
J. Andrew Royle, Angela K. Fuller, Christopher Sutherland
Growth of coast redwood and Douglas-fir following thinning in second-growth forests at Redwood National Park and Headwaters Forest Reserve Growth of coast redwood and Douglas-fir following thinning in second-growth forests at Redwood National Park and Headwaters Forest Reserve
Managers of second-growth forests at Redwood National Park and the Bureau of Land Management’s Headwaters Forest Reserve encourage the development of late seral forest characteristics using mechanical thinning, where competing vegetation is removed to promote growth of residual trees. Yet the ability to quantify and reliably predict outcomes of treatments such as these is hindered by the...
Authors
Phillip J. van Mantgem, Jason R. Teraoka, David H. LaFever, Laura Lalemand