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Publications

This list of publications includes peer-review journal articles, official USGS publications series, reports and more authored by scientists in the Ecosystems Mission Area. A database of all USGS publications, with advanced search features, can be accessed at the USGS Publications Warehouse.  

Filter Total Items: 42704

The pathogenesis of a 2022 North American highly pathogenic clade 2.3.4.4b H5N1 avian influenza virus in mallards (Anas platyrhynchos) The pathogenesis of a 2022 North American highly pathogenic clade 2.3.4.4b H5N1 avian influenza virus in mallards (Anas platyrhynchos)

Highly pathogenic (HP) avian influenza viruses (AIVs) of the clade 2.3.4.4 goose/Guangdong/1996 H5 lineage continue to be a problem in poultry and wild birds in much of the world. The recent incursion of a H5N1 clade 2.3.4.4b HP AIV from this lineage into North America has resulted in widespread outbreaks in poultry and consistent detections of the virus across diverse families of birds...
Authors
Erica Spackman, Mary J. Pantin-Jackwood, Scott A. Lee, Diann Prosser

Monkeypox virus in animals: Current knowledge of viral transmission and pathogenesis in wild animal reservoirs and captive animal models Monkeypox virus in animals: Current knowledge of viral transmission and pathogenesis in wild animal reservoirs and captive animal models

Mpox, formerly called monkeypox, is now the most serious orthopoxvirus (OPXV) infection in humans. This zoonotic disease has been gradually re-emerging in humans with an increasing frequency of cases found in endemic areas, as well as an escalating frequency and size of epidemics outside of endemic areas in Africa. Currently, the largest known mpox epidemic is spreading throughout the...
Authors
Elizabeth Falendysz, Juan G. Lopera, Tonie E. Rocke, Jorge E. Osorio

Assessing arthropod diversity metrics derived from stream environmental DNA: Spatiotemporal variation and paired comparisons with manual sampling Assessing arthropod diversity metrics derived from stream environmental DNA: Spatiotemporal variation and paired comparisons with manual sampling

Background Benthic invertebrate (BI) surveys have been widely used to characterize freshwater environmental quality but can be challenging to implement at desired spatial scales and frequency. Environmental DNA (eDNA) allows an alternative BI survey approach, one that can potentially be implemented more rapidly and cheaply than traditional methods.Methods We evaluated eDNA analogs of BI...
Authors
Aaron W. Aunins, Sara J. Mueller, Jennifer A. Fike, Robert S. Cornman

Soil medium and watering frequency alter growth and allocation for Blue Diamond cholla (Cylindropuntia multigeniculata), a rare cactus of the northeast Mojave Desert, USA Soil medium and watering frequency alter growth and allocation for Blue Diamond cholla (Cylindropuntia multigeniculata), a rare cactus of the northeast Mojave Desert, USA

Blue Diamond cholla (Cylindropuntia multigeniculata (Clokey) Blackb. [Cactaceae]) is a rare cactus of the Mojave Desert. We explored whether cultivation from joint cuttings is a viable method for supporting threatened populations. Terminal joints were collected from adult plants at the type locality and grown in a shade house: We tested whether 2 soil mixes that varied in the ratio of...
Authors
Sara J. Scoles-Sciulla, Alexander Stosich, Lesley A. DeFalco

Assessing tradeoffs between current and desired vegetation condition in a National Park using historical maps and high resolution lidar data Assessing tradeoffs between current and desired vegetation condition in a National Park using historical maps and high resolution lidar data

In the United States, National Park Service Civil War battlefield units are managed for both historical accuracy (i.e., to represent landscape conditions at the time of the conflict for historical interpretation), and for natural resource protection. However, managing for both goals can create conflicts as many battlefields were largely open or in second growth forests historically, but...
Authors
John A. Young, Carolyn Mahan

The invasive plant data landscape: A synthesis of spatial data and applications for research and management in the United States The invasive plant data landscape: A synthesis of spatial data and applications for research and management in the United States

Context An increase in the number and availability of datasets cataloging invasive plant distributions offers opportunities to expand our understanding, monitoring, and management of invasives across spatial scales. These datasets, created using on-the-ground observations and modeling techniques, are made both for and by researchers and managers.Objectives The large number and variety of...
Authors
Emily J. Fusco, Evelyn M. Beaury, Bethany A. Bradley, Michelle Cox, Catherine S. Jarnevich, Adam L. Mahood, R. Chelsea Nagy, Ty Nietupski, Jessica E. Halofsky

Mercury bioaccumulation and cortisol interact to influence endocrine and immune biomarkers in a free-ranging marine mammal Mercury bioaccumulation and cortisol interact to influence endocrine and immune biomarkers in a free-ranging marine mammal

Mercury bioaccumulation from deep-ocean prey and the extreme life history strategies of adult female northern elephant seals (Mirounga angustirostris) provide a unique system to assess the interactive effects of mercury and stress on animal health by quantifying blood biomarkers in relation to mercury (skeletal muscle and blood mercury) and cortisol concentrations. The thyroid hormone...
Authors
Sarah H. Peterson, Josh T. Ackerman, Rachel R. Holser, Birgitte I. McDonald, Daniel P. Costa, Daniel E. Crocker

I Am A...Science careers book for kids I Am A...Science careers book for kids

This activity book is an illustrative guide designed to introduce young minds about the exciting world of science careers. From ichthyologists to wildlife biologists, this book showcases a variety of science-based professions through fun and engaging activities. Each section of the book features a different science career and includes information about how the job got its name and what a...
Authors
Steven Sobieszczyk, Suzanna C. Soileau, Annie Scott

A research agenda for the science of actionable knowledge: Drawing from a review of the most misguided to the most enlightened claims in the science-policy interface literature A research agenda for the science of actionable knowledge: Drawing from a review of the most misguided to the most enlightened claims in the science-policy interface literature

Linking science with action affords a prime opportunity to leverage greater societal impact from research and increase the use of evidence in decision-making. Success in these areas depends critically upon processes of producing and mobilizing knowledge, as well as supporting and making decisions. For decades, scholars have idealized and described these social processes in different ways
Authors
Kripa Jagannathan, Geniffer Emmanuel, James Arnott, Katharine Mach, Aparna Bamzai-Dodson, Kristen Goodrich, Ryan Meyer, Mark Neff, Dana Sjostrom, Kristin Timm, Esther Turnhout, Gabrielle Wong-Parodi, Angela Bednarek, Alison Meadow, Art Dewulf, Christine J. Kirchhoff, Richard C. Moss, Leah Nichols, Eliza Oldach, Maria Carmen Lemos, Nicole Klenk

Land cover differentially affects abundance of common and rare birds Land cover differentially affects abundance of common and rare birds

While rare species are vulnerable to global change, large declines in common species (i.e., those with large population sizes, large geographic distributions, and/or that are habitat generalists) also are of conservation concern. Understanding if and how commonness mediates species' responses to global change, including land cover change, can help guide conservation strategies. We...
Authors
Kristin P. Davis, Paul C. Banko, Liba Pejchar

Diverse portfolios: Investing in tributaries for restoration of large river fishes in the Anthropocene Diverse portfolios: Investing in tributaries for restoration of large river fishes in the Anthropocene

Rehabilitation of large Anthropocene rivers requires engagement of diverse stakeholders across a broad range of sociopolitical boundaries. Competing objectives often constrain options for ecological restoration of large rivers whereas fewer competing objectives may exist in a subset of tributaries. Further, tributaries contribute toward building a “portfolio” of river ecosystem assets...
Authors
Kristen L. Bouska, Brian D. Healy, Michael J. Moore, Corey Garland Dunn, Jonathan J. Spurgeon, Craig P. Paukert

Forage fish species prefer habitat within designated offshore wind energy areas on the US Northeast Shelf ecosystem Forage fish species prefer habitat within designated offshore wind energy areas on the US Northeast Shelf ecosystem

As the world develops sources of renewable energy, there is an intensifying interest in offshore wind energy production. The Northeast U.S. Continental Shelf (NES) ecosystem has favorable wind dynamics, with active development of wind energy. In this study, we present species distribution models that consider both occupancy and biomass responses for a broad spectrum of fish and...
Authors
Kevin Friedland, Evan M. Adams, Chandra Goetsch, Julia Gulka, Damien Brady, Everett Rzeszowski, Daniel Crear, Sarah Gaichas, Andrew Gill, M. Conor McManus, Elizabeth T. Methratta, Janelle L. Morano, Michelle Staudinger
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