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Publications

This list of publications includes peer-review journal articles, official USGS publications series, reports and more authored by scientists in the Ecosystems Mission Area. A database of all USGS publications, with advanced search features, can be accessed at the USGS Publications Warehouse.  

Filter Total Items: 42788

Design tradeoffs in long-term research for stream salamanders Design tradeoffs in long-term research for stream salamanders

Long-term research programs can benefit from early and periodic evaluation of their ability to meet stated objectives. In particular, consideration of the spatial allocation of effort is key. We sampled 4 species of stream salamanders intensively for 2 years (2010–2011) in the Chesapeake and Ohio Canal National Historical Park, Maryland, USA to evaluate alternative distributions of...
Authors
Adrianne B. Brand, Evan H. Campbell Grant

Novel dermatophilosis and concurrent amyloidosis in Sanderlings (Calidris alba) from Louisiana, USA Novel dermatophilosis and concurrent amyloidosis in Sanderlings (Calidris alba) from Louisiana, USA

We observed Sanderlings (Calidris alba) with facial growths in coastal Louisiana, US during summer of 2016. Severe lesions were associated with lethargy and lack of a flight response. We determined that the skin growth etiology was a bacterium of the genus Dermatophilus, rarely reported infecting birds. Sanderlings also exhibited severe amyloidosis.
Authors
Valerie I. Shearn-Bochsler, Jessica L. Schulz, Robert C. Dobbs, Jeffrey M. Lorch, J. Hardin Waddle, Daniel A. Grear

eDNAoccupancy: An R package for multi-scale occupancy modeling of environmental DNA data eDNAoccupancy: An R package for multi-scale occupancy modeling of environmental DNA data

In this article we describe eDNAoccupancy, an R package for fitting Bayesian, multi-scale occupancy models. These models are appropriate for occupancy surveys that include three, nested levels of sampling: primary sample units within a study area, secondary sample units collected from each primary unit, and replicates of each secondary sample unit. This design is commonly used in...
Authors
Robert Dorazio, Richard A. Erickson

No evidence of critical slowing down in two endangered Hawaiian honeycreepers No evidence of critical slowing down in two endangered Hawaiian honeycreepers

There is debate about the current population trends and predicted short-term fates of the endangered forest birds, Hawai`i Creeper (Loxops mana) and Hawai`i `Ākepa (L. coccineus). Using long-term population size estimates, some studies report forest bird populations as stable or increasing, while other studies report signs of population decline or impending extinction associated with...
Authors
Jessica C. Rozek, Richard J. Camp, J. Michael Reed

Why were California's wine country fires so destructive? Why were California's wine country fires so destructive?

As of late October more than a dozen wildfires north of San Francisco had killed more than 40 people, burned approximately 160,000 acres and destroyed more than 7,000 structures. This tragic loss of life and property is unprecedented in California. However, the fires are not anomalous events in terms of their size, intensity or the speed with which they spread. Indeed, the path of the...
Authors
Jon E. Keeley

Pharmaceuticals in water, fish and osprey nestlings in Delaware River and Bay Pharmaceuticals in water, fish and osprey nestlings in Delaware River and Bay

Exposure of wildlife to Active Pharmaceutical Ingredients (APIs) is likely to occur but studies of risk are limited. One exposure pathway that has received attention is trophic transfer of APIs in a water-fish-osprey food chain. Samples of water, fish plasma and osprey plasma were collected from Delaware River and Bay, and analyzed for 21 APIs. Only 2 of 21 analytes exceeded method...
Authors
Thomas G. Bean, Barnett A. Rattner, Rebecca S. Lazarus, Daniel D. Day, S. Rebekah Burket, Bryan W. Brooks, Samuel P. Haddad, William W. Bowerman

Population trends, survival, and sampling methodologies for a population of Rana draytonii Population trends, survival, and sampling methodologies for a population of Rana draytonii

Estimating population trends provides valuable information for resource managers, but monitoring programs face trade-offs between the quality and quantity of information gained and the number of sites surveyed. We compared the effectiveness of monitoring techniques for estimating population trends of Rana draytonii (California Red-legged Frog) at Point Reyes National Seashore, California...
Authors
Gary M. Fellers, Patrick M. Kleeman, David A.W. Miller, Brian J. Halstead

Riparian bird density decline in response to biocontrol of Tamarix from riparian ecosystems along the Dolores River in SW Colorado, USA Riparian bird density decline in response to biocontrol of Tamarix from riparian ecosystems along the Dolores River in SW Colorado, USA

Biocontrol of invasive tamarisk (Tamarix spp.) in the arid Southwest using the introduced tamarisk beetle (Diorhabda elongata) has been hypothesized to negatively affect some breeding bird species, but no studies to date have documented the effects of beetle-induced defoliation on riparian bird abundance. We assessed the effects of tamarisk defoliation by monitoring defoliation rates...
Authors
Abigail J. Darrah, Charles van Riper

Variation in annual clutch phenology of desert tortoises (Gopherus morafkai) in the Sonoran Desert of Arizona Variation in annual clutch phenology of desert tortoises (Gopherus morafkai) in the Sonoran Desert of Arizona

The phenology of egg production and oviposition in organisms affects survival and development of neonates and thus, both offspring and maternal fitness. In addition, in organisms with environmental sex determination, clutch phenology can affect hatchling sex ratios with attendant effects on population demography. The rapid rate of contemporary climate change might disrupt reproductive...
Authors
Jeffrey E. Lovich, Roy C. Averill-Murray, Mickey Agha, Joshua R. Ennen, Meaghan Austin

Patterns and correlates of giant sequoia foliage dieback during California’s 2012–2016 hotter drought Patterns and correlates of giant sequoia foliage dieback during California’s 2012–2016 hotter drought

Hotter droughts – droughts in which unusually high temperatures exacerbate the effects of low precipitation – are expected to increase in frequency and severity in coming decades, challenging scientists and managers to identify which parts of forested landscapes may be most vulnerable. In 2014, in the middle of California’s historically unprecedented 2012–2016 hotter drought, we noticed...
Authors
Nathan L. Stephenson, Adrian J. Das, Nicholas J. Ampersee, Kathleen G. Cahill, Anthony C. Caprio, John E. Sanders, A. Park Williams

Inland fisheries – Invisible but integral to the UN Sustainable Development Agenda for ending poverty by 2030 Inland fisheries – Invisible but integral to the UN Sustainable Development Agenda for ending poverty by 2030

The United Nations’ (UN) 2030 Agenda for Sustainable Development defines the formidable challenge of integrating historically separate economic, social, and environmental goals into a unified ‘plan of action for people, planet, and prosperity.’ We highlight the substantial contribution inland fisheries can make towards preventing increased poverty and, in some cases, alleviating poverty...
Authors
Abigail Lynch, I.G. Cowx, Etienne Fluet-Chouinard, S. M. Glaser, Sui C. Phang, T. Douglas Beard, S. D. Bower, J.L. Brooks, David B. Bunnell, Julie Claussen, S. J. Cooke, Yu-Chun Kao, Kai Lorenzen, Bonnie Myers, Andrea J. Reid, J. J. Taylor, S. Youn

Development of a dual luciferase activity and fluorescamine protein assay adapted to a 384 micro-well plate format: Reducing variability in human luciferase transactivation cell lines aimed at endocrine active substances Development of a dual luciferase activity and fluorescamine protein assay adapted to a 384 micro-well plate format: Reducing variability in human luciferase transactivation cell lines aimed at endocrine active substances

There is a need to adapt cell bioassays to 384-well and 1536-well formats instead of the traditional 96-well format as high-throughput screening (HTS) demands increase. However, the sensitivity and performance of the bioassay must be re-verified in these higher micro-well plates, and verification of cell health must also be HT (high-throughput). We have adapted two commonly used human...
Authors
Jennifer Brennan, Donald E. Tillitt
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