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Publications

This list of publications includes peer-review journal articles, official USGS publications series, reports and more authored by scientists in the Ecosystems Mission Area. A database of all USGS publications, with advanced search features, can be accessed at the USGS Publications Warehouse.  

Filter Total Items: 42871

Skagit River coho salmon life history model—Users’ guide Skagit River coho salmon life history model—Users’ guide

Natural resource management is conducted in the context of multiple anthropogenic stressors and is further challenged owing to changing climate. Experiments to determine the effects of climate change on complex ecological systems are nearly impossible. However, using a simulation model to synthesize current understanding of key ecological processes through the life cycle of a fish...
Authors
Andrea Woodward, Grant Kirby, Scott Morris

California sea otter (Enhydra lutris nereis) census results, Spring 2017 California sea otter (Enhydra lutris nereis) census results, Spring 2017

The 2017 census of southern sea otters (Enhydra lutris nereis) was conducted between late April and early July along the mainland coast of central California and in April at San Nicolas Island in southern California. The 3-year average of combined counts from the mainland range and San Nicolas Island was 3,186, down by 86 sea otters from the previous year. This is the second year that...
Authors
M. Tim Tinker, Brian B. Hatfield

Alligator mississippiensis (American Alligator): Novel non-native prey Alligator mississippiensis (American Alligator): Novel non-native prey

American Alligators are opportunistic predators and their food habits have been well studied (Elsey et al. 1992. Proc. Annu. Conf. Southeast. Assoc. Fish Wildl. Agencies 46:57–66, and references therein and below). Composition of A. mississippiensis diet often varies due to regional limitation in prey availability (Neill 1971. The Last of the Ruling Reptiles. Alligators, Crocodiles, and...
Authors
Ruth M. Elsey, Eric Ledet, Jacoby Carter

Distribution and abundance of Least Bell’s Vireos (Vireo bellii pusillus) and Southwestern Willow Flycatchers (Empidonax traillii extimus) on the Middle San Luis Rey River, San Diego, southern California—2016 data summary Distribution and abundance of Least Bell’s Vireos (Vireo bellii pusillus) and Southwestern Willow Flycatchers (Empidonax traillii extimus) on the Middle San Luis Rey River, San Diego, southern California—2016 data summary

Executive Summary We surveyed for Least Bell’s Vireos (LBVI) (Vireo bellii pusillus) and Southwestern Willow Flycatchers (SWFL) (Empidonax traillii extimus) along the San Luis Rey River, between College Boulevard in Oceanside and Interstate 15 in Fallbrook, California (middle San Luis Rey River), in 2016. Surveys were done from March 30 to July 11 (LBVI) and from May 18 to July 30 (SWFL)...
Authors
Lisa D. Allen, Scarlett L. Howell, Barbara E. Kus

Importance of scale, land cover, and weather on the abundance of bird species in a managed forest Importance of scale, land cover, and weather on the abundance of bird species in a managed forest

Climate change and habitat loss are projected to be the two greatest drivers of biodiversity loss over the coming century. While public lands have the potential to increase regional resilience of bird populations to these threats, long-term data are necessary to document species responses to changes in climate and habitat to better understand population vulnerabilities. We used...
Authors
Alexis R. Grinde, Gerald J. Hiemi, Brian R. Sturtevant, Hannah Panci, Wayne E. Thogmartin, Peter Wolter

Genetic composition and connectivity of the Antillean manatee (Trichechus manatus manatus) in Panama Genetic composition and connectivity of the Antillean manatee (Trichechus manatus manatus) in Panama

Genetic diversity and haplotype composition of the West Indian manatee (Trichechus manatus) population from the San San Pond Sak wetland in Bocas del Toro, Panama was studied using a segment of mitochondrial DNA (D’loop). No genetic information has been published to date for Panamanian populations. Due to the secretive behavior and small population size of the species in the area, DNA...
Authors
Edgardo Diaz-Ferguson, Margaret Hunter, Hector M. Guzman

States and rates: Complementary approaches to developing flow‐ecology relationships States and rates: Complementary approaches to developing flow‐ecology relationships

In recognition of the influence of flow on riverine habitats and organisms, stream ecologists have devoted considerable effort to the development of quantitative predictive relationships describing ecological responses to flow variability, i.e. flow‐ecology relationships.Methods used to generate flow‐ecology relationships can be thought of as a continuum bookended by pure states...
Authors
Kit Wheeler, Seth J. Wenger, Mary Freeman

Semi-quantitative assessment of disease risks at the human, livestock, wildlife interface for the Republic of Korea using a nationwide survey of experts: A model for other countries Semi-quantitative assessment of disease risks at the human, livestock, wildlife interface for the Republic of Korea using a nationwide survey of experts: A model for other countries

Wildlife-associated diseases and pathogens have increased in importance; however, management of a large number of diseases and diversity of hosts is prohibitively expensive. Thus, the determination of priority wildlife pathogens and risk factors for disease emergence is warranted. We used an online questionnaire survey to assess release and exposure risks, and consequences of wildlife...
Authors
Jusun Hwang, Kyunglee Lee, Daniel P. Walsh, SangWha Kim, Jonathan M. Sleeman, Hang Lee

Burrow dusting or oral vaccination prevents plague-associated prairie dog colony collapse Burrow dusting or oral vaccination prevents plague-associated prairie dog colony collapse

Plague impacts prairie dogs (Cynomys spp.), the endangered black-footed ferret (Mustela nigripes) and other sensitive wildlife species. We compared efficacy of prophylactic treatments (burrow dusting with deltamethrin or oral vaccination with recombinant “sylvatic plague vaccine” [RCN-F1/V307]) to placebo treatment in black-tailed prairie dog (C. ludovicianus) colonies. Between 2013 and...
Authors
Daniel W. Tripp, Tonie E. Rocke, Jonathan P. Runge, Rachel C. Abbott, Michael W. Miller

An evaluation of the efficacy of using environmental DNA (eDNA) to detect giant gartersnakes (Thamnophis gigas) An evaluation of the efficacy of using environmental DNA (eDNA) to detect giant gartersnakes (Thamnophis gigas)

Detecting populations of rare or cryptic species is essential for their conservation. For species like giant gartersnakes (Thamnophis gigas), conventional survey methods can be expensive and inefficient. These sampling difficulties might be overcome by modern techniques that detect deoxyribonucleic acid (DNA) shed by organisms into the environment (eDNA). We evaluated the efficacy of...
Authors
Brian J. Halstead, Dustin A. Wood, Lizabeth Bowen, Shannon C. Waters-Dynes, Amy G. Vandergast, Julia S. Ersan, Shannon M. Skalos, Michael L. Casazza

Riparian plant composition along hydrologic gradients in a dryland river basin and implications for a warming climate Riparian plant composition along hydrologic gradients in a dryland river basin and implications for a warming climate

Droughts in dryland regions on all continents are expected to increase in severity and duration under future climate projections. In dryland regions, it is likely that minimum streamflow will decrease with some perennial streams shifting to intermittent flow under climate-driven changes in precipitation and runoff and increases in temperature. Decreasing base flow and shifting flow...
Authors
Lindsay Reynolds, Patrick B. Shafroth

Minimizing effects of methodological decisions on interpretation and prediction in species distribution studies: An example with background selection Minimizing effects of methodological decisions on interpretation and prediction in species distribution studies: An example with background selection

Evaluating the conditions where a species can persist is an important question in ecology both to understand tolerances of organisms and to predict distributions across landscapes. Presence data combined with background or pseudo-absence locations are commonly used with species distribution modeling to develop these relationships. However, there is not a standard method to generate...
Authors
Catherine S. Jarnevich, Marian Talbert, Jeffrey T. Morisette, Cameron L. Aldridge, Cynthia Brown, Sunil Kumar, Daniel J. Manier, Colin Talbert, Tracy R. Holcombe
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