Publications
This list of publications includes peer-review journal articles, official USGS publications series, reports and more authored by scientists in the Ecosystems Mission Area. A database of all USGS publications, with advanced search features, can be accessed at the USGS Publications Warehouse.
Filter Total Items: 42715
Herbivorous grass carp (Ctenopharyngodon idella) exhibit greater olfactory response to amino acids than filter-feeding bighead (Hypophthalmichthysnobilis) and silver carp (Hypophthalmichthys molitrix) Herbivorous grass carp (Ctenopharyngodon idella) exhibit greater olfactory response to amino acids than filter-feeding bighead (Hypophthalmichthysnobilis) and silver carp (Hypophthalmichthys molitrix)
Due to their invasiveness in North America, grass (Ctenopharyngodon idella), bighead (Hypophthalmichthys nobilis), and silver carp (Hypophthalmichthys molitrix) are management priorities. Comparing electrophysiological responses to olfactory cues, such as amino acids, could help identify stimuli to facilitate management efforts (i.e., repellants or baits). We assessed olfactory response...
Authors
Mark L. Wildhaber, Benjamin M West, Karlie K Ditter, Alex S. Peterson, Robin D. Calfee, Zachary D Beaman
Least Bell’s Vireo (Vireo bellii pusillus) and Southwestern Willow Flycatcher (Empidonax traillii extimus) surveys in the Sepulveda Dam Basin, Los Angeles County, California—2022 data summary Least Bell’s Vireo (Vireo bellii pusillus) and Southwestern Willow Flycatcher (Empidonax traillii extimus) surveys in the Sepulveda Dam Basin, Los Angeles County, California—2022 data summary
Executive Summary We surveyed for Least Bell’s Vireos (Vireo bellii pusillus; vireo) and Southwestern Willow Flycatchers (Empidonax traillii extimus; flycatcher) along Bull Creek, Haskell Creek, and the Los Angeles River (Sepulveda Dam project area) in Los Angeles County, California, in 2022. Four vireo surveys were completed from April 26 to July 14, and three flycatcher surveys were...
Authors
Ryan E. Pottinger, Barbara E. Kus
Ecological effects of pinyon-juniper removal in the Western United States—A synthesis of scientific research, January 2014–March 2021 Ecological effects of pinyon-juniper removal in the Western United States—A synthesis of scientific research, January 2014–March 2021
Executive Summary Increasing density of pinyon (Pinus spp.) and juniper (Juniperus spp.) woodlands (hereinafter “pinyon-juniper”), as well as expansion of these woodlands into adjacent shrublands and grasslands, has altered ecosystem function and wildlife habitat across large areas of the interior western United States. Although there are many natural and human-caused drivers of woodland...
Authors
Douglas J. Shinneman, Susan K. McIlroy, Sharon A Poessel, Rosemary L. Downing, Tracey N. Johnson, Aaron C. Young, Todd E. Katzner
Dispersive currents explain patterns of population connectivity in an ecologically and economically important fish Dispersive currents explain patterns of population connectivity in an ecologically and economically important fish
How to identify the drivers of population connectivity remains a fundamental question in ecology and evolution. Answering this question can be challenging in aquatic environments where dynamic lake and ocean currents coupled with high levels of dispersal and gene flow can decrease the utility of modern population genetic tools. To address this challenge, we used RAD-Seq to genotype 959...
Authors
Claire Schraidt, Amanda Susanne Ackiss, Wesley Alan Larson, Mark D Rowe, Tomas O Hook, Mark R. Christie
Linear and landscape disturbances alter Mojave desert tortoise movement behavior Linear and landscape disturbances alter Mojave desert tortoise movement behavior
Introduction: Animal movements are influenced by landscape features; disturbances to the landscape can alter movements, dispersal, and ultimately connectivity among populations. Faster or longer movements adjacent to a localized disturbance or within disturbed areas could indicate reduced habitat quality whereas slower or shorter movements and reduced movements may indicate greater...
Authors
Steven J. Hromada, Todd Esque, Amy G. Vandergast, K. Kristina Drake, Felicia Chen, Benjamin O Gottsacker, Jordan Andrew Swart, Ken E Nussear
Putting down roots: Afforestation and bank cohesion of Icelandic Rivers Putting down roots: Afforestation and bank cohesion of Icelandic Rivers
Riparian vegetation is widely recognized as a critical component of functioning fluvial systems. Human pressures on woody vegetation including riparian areas have had lasting effects, especially at high latitude. In Iceland, prior to human settlement, native downy birch woodlands covered approximately 15%–40% of the land area compared to 1%–2% today. Afforestation efforts include...
Authors
Sara L. Rathburn, Prostur Eysteinsson, Thorsteinn Saemundsson, John T. Kemper, Celeste D. Wieting, Jonathan M. Friedman
Pollinator conservation and climate science at the U.S. Geological Survey Pollinator conservation and climate science at the U.S. Geological Survey
Introduction Ecosystems—whether agricultural, urban, or natural—depend on pollinators, great and small. Pollinators in the form of bees, birds, butterflies, bats, and even moths provide vital, but often invisible services, from contributing to biodiverse terrestrial wildlife and plant communities to supporting healthy watersheds. Pollinator declines worldwide have been noted as land-use...
Authors
Elise R. Irwin, Jonathan R. Mawdsley
A new DNA extraction method (HV-CTAB-PCI) for amplification of nuclear markers from open ocean-retrieved faeces of an herbivorous marine mammal, the dugong A new DNA extraction method (HV-CTAB-PCI) for amplification of nuclear markers from open ocean-retrieved faeces of an herbivorous marine mammal, the dugong
Non-invasively collected faecal samples are an alternative source of DNA to tissue samples, that may be used in genetic studies of wildlife when direct sampling of animals is difficult. Although several faecal DNA extraction methods exist, their efficacy varies between species. Previous attempts to amplify mitochondrial DNA (mtDNA) markers from faeces of wild dugongs (Dugong dugon) have...
Authors
Vicky Ooi, Lee McMichael, Margaret Hunter, Aristide Takoukam Kamla, Janet M. Lanyon
Evaluating population trends of juvenile Atlantic Sturgeon at low abundance in a dynamic estuarine environment (Hudson River, New York) Evaluating population trends of juvenile Atlantic Sturgeon at low abundance in a dynamic estuarine environment (Hudson River, New York)
Evaluating population trends in dynamic estuarine environments can be challenging, especially when survey data include a high percentage of zero observations. In fishery-independent surveys, zeros that come from reduced susceptibility to sample gears and reduced availability of the population to the survey impact survey catchability and negatively bias relative abundance indices. A zero...
Authors
Mark Richard Dufour, Song S. Qian
Assembly of the largest squamate reference genome to date: The western fence lizard, Sceloporus occidentalis Assembly of the largest squamate reference genome to date: The western fence lizard, Sceloporus occidentalis
Spiny lizards (genus Sceloporus) have long served as important systems for studies of behavior, thermal physiology, dietary ecology, vector biology, speciation, and biogeography. The western fence lizard, Sceloporus occidentalis, is found across most of the major biogeographical regions in the western United States and northern Baja California, Mexico, inhabiting a wide range of habitats...
Authors
Anusha P. Bishop, Erin P. Westeen, Michael L. Yuan, Merly Escalona, Eric Beraut, Colin Fairbairn, Mohan P. A. Marimuthu, Oanh Nguyen, Noravit Chumchim, Erin Toffelmier, Robert N. Fisher, H. Bradley Shaffer, Ian J. Wang
Antimycin A species sensitivity distribution: Perspectives for non-indigenous fish control Antimycin A species sensitivity distribution: Perspectives for non-indigenous fish control
The global transfer of aquatic biota outside their native geographical range has resulted in dramatic changes to biological communities. Many nonnative species introductions are facilitated by human activity and then spread intra-continentally through connected watersheds once established. Resource managers therefore utilize multiple control technologies, such as management chemicals...
Authors
Gavin N. Saari
Historical DNA reveals climate adaptation in an endangered songbird Historical DNA reveals climate adaptation in an endangered songbird
To cope with climate change, species may shift their distributions or adapt in situ to changing environmental conditions. However, clear examples of genetic changes via adaptation are limited. We explore evolutionary responses to climate change in the endangered southwestern willow flycatcher (Empidonax traillii extimus) through whole-genome comparisons between historical specimens...
Authors
Sheela P. Turbek, Christen Bossu, Christine Rayne, Cristian Gruppi, Barbara E. Kus, Mary J. Whitfield, Thomas B. Smith, Eben H. Paxton, Rachael A. Bay, Kristen C Ruegg