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Publications

This list of publications includes peer-review journal articles, official USGS publications series, reports and more authored by scientists in the Ecosystems Mission Area. A database of all USGS publications, with advanced search features, can be accessed at the USGS Publications Warehouse.  

Filter Total Items: 42702

Understanding constraints on submersed vegetation distribution in a large, floodplain river: The role of water level fluctuations, water clarity and river geomorphology Understanding constraints on submersed vegetation distribution in a large, floodplain river: The role of water level fluctuations, water clarity and river geomorphology

Aquatic vegetation is a key component of large floodplain river ecosystems. In the Upper Mississippi River System (UMRS), there is a long-standing interest in restoring aquatic vegetation in areas where it has declined or disappeared. To better understand what constrains vegetation distribution in large river ecosystems and inform ongoing efforts to restore submersed aquatic vegetation...
Authors
Alicia Carhart, John Kalas, James T. Rogala, Jason J. Rohweder, Deanne C. Drake, Jeffrey N. Houser

Pathology of Lagovirus europaeus GI.2/RHDV2/b (rabbit hemorrhagic disease virus 2) in native North American lagomorphs Pathology of Lagovirus europaeus GI.2/RHDV2/b (rabbit hemorrhagic disease virus 2) in native North American lagomorphs

Rabbit hemorrhagic disease, a notifiable foreign animal disease in the US, was reported for the first time in wild native North American lagomorphs in April 2020 in the southwestern US. Affected species included the desert cottontail (Sylvilagus audubonii), mountain cottontail (Sylvilagus nuttallii), black-tailed jackrabbit (Lepus californicus), and antelope jackrabbit (Lepus alleni)...
Authors
Julia S. Lankton, Susan Knowles, Saskia Keller, Valerie I. Shearn-Bochsler, Hon S. Ip

Legacy contaminant-stable isotope-age relationships in Lake Ontario year-class Alewife (Alosa pseudoharengus) Legacy contaminant-stable isotope-age relationships in Lake Ontario year-class Alewife (Alosa pseudoharengus)

Alewife (Alosa pseudoharengus) are the preferred prey species of the top piscivore predators in the Lake Ontario food web and are an essential constituent in the bioaccumulation of persistent organic contaminants. Year-class samples collected in 2016 represent the alewife age ranges of 2015 (Age-01) sequentially dating back to 2008 (Age-08). The most abundant contaminant measured in Lake...
Authors
James J. Pagano, James J. Garner, Brian Weidel, Daryl J. McGoldrick, Maureen G. Walsh, Thomas M. Holsen

TrendPowerTool: A lookup tool for estimating the statistical power of a monitoring program to detect population trends TrendPowerTool: A lookup tool for estimating the statistical power of a monitoring program to detect population trends

A simulation-based power analysis can be used to estimate the sample sizes needed for a successful monitoring program, but requires technical expertise and sometimes extensive computing resources. We developed a web-based lookup app, called TrendPowerTool (https://www.usgs.gov/apps/TrendPowerTool/), to provide guidance for ecological monitoring programs when resources are not available...
Authors
Emily L. Weiser, James E. Diffendorfer, Laura Lopez-Hoffman, Darius J. Semmens, Wayne E. Thogmartin

Survival and growth of suckers in mesocosms at three locations within Upper Klamath Lake, Oregon, 2018 Survival and growth of suckers in mesocosms at three locations within Upper Klamath Lake, Oregon, 2018

Executive Summary Due to high mortality in the first year or two of life, Lost River (Deltistes luxatus sp.) and Shortnose suckers (Chasmistes brevirostris sp.) in Upper Klamath Lake, Oregon rarely reach maturity. In 2015, the U.S. Fish and Wildlife Service began the Sucker Assisted Rearing Program (SARP) to improve early life survival before releasing the fish back into Upper Klamath...
Authors
Summer M. Burdick, Carla M. Conway, Carl O. Ostberg, Ryan J. Bart, Diane G. Elliott

Using next generation sequencing of alpine plants to improve fecal metabarcoding diet analysis for Dall’s sheep Using next generation sequencing of alpine plants to improve fecal metabarcoding diet analysis for Dall’s sheep

Objectives Dall’s sheep (Ovis dalli dalli) are important herbivores in the mountainous ecosystems of northwestern North America, and recent declines in some populations have sparked concern. Our aim was to improve capabilities for fecal metabarcoding diet analysis of Dall’s sheep and other herbivores by contributing new sequence data for arctic and alpine plants. This expanded reference...
Authors
Kelly E. Williams, Damian M. Menning, Eric J. Wald, Sandra L. Talbot, Kumi L. Rattenbury, Laura R. Prugh

Daily patterns of river herring (Alosa spp.) spawning migrations: Environmental drivers and variation among coastal streams in Massachusetts Daily patterns of river herring (Alosa spp.) spawning migrations: Environmental drivers and variation among coastal streams in Massachusetts

The timing of life history events in many plants and animals depends on the seasonal fluctuations of specific environmental conditions. Climate change is altering environmental regimes and disrupting natural cycles and patterns across communities. Anadromous fishes that migrate between marine and freshwater habitats to spawn are particularly sensitive to shifting environmental conditions...
Authors
Henry Legett, Adrian Jordaan, Allison H. Roy, John Sheppard, Marcelo Somos-Valenzuela, Michelle Staudinger

Measuring adrenal and reproductive hormones in hair from southern Beaufort Sea polar bears (Ursus maritimus) Measuring adrenal and reproductive hormones in hair from southern Beaufort Sea polar bears (Ursus maritimus)

Polar bears (Ursus maritimus) use sea ice to access marine mammal prey. In Alaska’s Southern Beaufort Sea, the declining availability of sea ice habitat in summer and fall has reduced opportunities for polar bears to routinely hunt on the ice for seals, their primary prey. This reduced access to prey may result in physiological stress with subsequent potential consequences to...
Authors
Marilize Van der Walt, Lorin Neuman-Lee, Patricia Terletzky, Todd C. Atwood, Eric Gese, Susannah French

Riparian forests buffer the negative effects of cropland on macroinvertebrate diversity in lowland Amazonian streams Riparian forests buffer the negative effects of cropland on macroinvertebrate diversity in lowland Amazonian streams

Riparian forests regulate stream ecosystems and biodiversity. Therefore, changes to riparian structure may threaten stream ecosystem function by triggering taxonomic and functional changes to aquatic communities. Because macroinvertebrate assemblages are sensitive to environmental changes, they can be effective indicators of stream integrity in disturbed landscapes. To assess the role of...
Authors
Nubia C.S. Marques, Kathi Jo Jankowski, Marcia N. Macedo, Leandro Juen, Ana Luiza-Andrade, Linda A. Deegan

Differential susceptibility of Yukon River and Salish Sea stocks of Chinook salmon Oncorhynchus tshawytscha to ichthyophoniasis Differential susceptibility of Yukon River and Salish Sea stocks of Chinook salmon Oncorhynchus tshawytscha to ichthyophoniasis

Preliminary evidence suggests that Chinook salmon Oncorhynchus tshawytscha from the Yukon River may be more susceptible to Ichthyophonus sp. infections than Chinook from stocks further south. To investigate this hypothesis in a controlled environment, we experimentally challenged juvenile Chinook from the Yukon River and from the Salish Sea with Ichthyophonus sp. and evaluated mortality...
Authors
Diane G. Elliott, Carla M. Conway, Constance L. McKibben, Ashley MacKenzie, Lucas M. Hart, Maya Groner, Maureen K. Purcell, Jacob L. Gregg, Paul Hershberger

Growth and defense characteristics of whitebark pine (Pinus albicaulis) and lodgepole pine (Pinus contorta var latifolia) in a high-elevation, disturbance-prone mixed-conifer forest in northwestern Montana, USA Growth and defense characteristics of whitebark pine (Pinus albicaulis) and lodgepole pine (Pinus contorta var latifolia) in a high-elevation, disturbance-prone mixed-conifer forest in northwestern Montana, USA

Recent, widespread tree mortality in the western U.S. resulting from changes in climate, pathogens, insect activity, and forest management practices has led to concerns for many ecologically and culturally important species. Within conifers, resin-based defenses have long been recognized as a primary defense mechanism against a variety of insects and pathogens. Oleoresin produced by...
Authors
Nicholas E. Kichas, Amy M. Trowbridge, Kenneth F. Raffa, Shealyn C. Malone, Sharon M. Hood, Richard G. Everett, David B. McWethy, Gregory T. Pederson

When a typical jumper skips: Itineraries and staging habitats used by Red Knots (Calidris canutus piersmai) migrating between northwest Australia and the New Siberian Islands When a typical jumper skips: Itineraries and staging habitats used by Red Knots (Calidris canutus piersmai) migrating between northwest Australia and the New Siberian Islands

The ecological reasons for variation in avian migration, with some populations migrating across thousands of kilometres between breeding and non-breeding areas with one or few refuelling stops, in contrast to others that stop more often, remain to be pinned down. Red Knots Calidris canutus are a textbook example of a shorebird species that makes long migrations with only a few stops...
Authors
Theunis Piersma, Eva Kok, Chris J. Hassell, Yvonne I. Verkuil, Guangchun Lei, He-Bo Peng, Eldar Rakhimberdiev, Paul Howey, Julia Karagicheva, T. Lee Tibbitts, Ying-Chi Chan
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