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Publications

This list of publications includes peer-review journal articles, official USGS publications series, reports and more authored by scientists in the Ecosystems Mission Area. A database of all USGS publications, with advanced search features, can be accessed at the USGS Publications Warehouse.  

Filter Total Items: 42712

Forest bird trends within Haleakala National Park Forest bird trends within Haleakala National Park

In 2017, the comprehensive east Maui bird surveys allowed for an update in status and evaluation of trends in bird populations within Haleakalā National Park. This report describes a finer-scale analysis of the park lands, distinguishing between the upper Kīpahulu Valley plus adjacent high-elevation areas compared to the rest of the park. I report abundance estimates and assess trends...
Authors
Kevin W. Brinck

Wildfire risk and hazardous fuel reduction treatments along the US-Mexico border: A review of the science (1985-2019) Wildfire risk and hazardous fuel reduction treatments along the US-Mexico border: A review of the science (1985-2019)

The ecosystems along the border between the United States and Mexico are at increasing risk to wildfire due to interactions among climate, land-use, and fuel loads. A wide range of fuel treatments have been implemented to mitigate wildfire and its threats to valued resources, yet we have little information about treatment effectiveness. To fill critical knowledge gaps, we reviewed...
Authors
Katherine M. Laushman, Seth M. Munson, Timothy N. Titus

Genetic diversity, population structure, and historical demography of a highly vagile and human‐impacted seabird in the Pacific Ocean: The red‐tailed tropicbird, Phaethon rubricauda Genetic diversity, population structure, and historical demography of a highly vagile and human‐impacted seabird in the Pacific Ocean: The red‐tailed tropicbird, Phaethon rubricauda

Many seabird breeding colonies have recovered from heavy anthropogenic disturbance after conservation actions. The widely distributed red‐tailed tropicbird, Phaethon rubricauda, was used as a model species to assess potential anthropogenic impacts on the genetic diversity of breeding colonies in the Pacific Ocean.Cytochrome c oxidase subunit I and control region sequences analyses were...
Authors
Andrea I Varela, Katherina Brokordt, Stefanie M.H. Ismar‐Rebitz, Chris P Gaskin, Nicholas Carlile, Terence O’Dwyer, Josh Adams, Eric A. Vanderwerf, Guillermo Luna‐Jorquera

Improving the accessibility and transferability of machine learning algorithms for identification of animals in camera trap images: MLWIC2 Improving the accessibility and transferability of machine learning algorithms for identification of animals in camera trap images: MLWIC2

Motion‐activated wildlife cameras (or “camera traps”) are frequently used to remotely and noninvasively observe animals. The vast number of images collected from camera trap projects has prompted some biologists to employ machine learning algorithms to automatically recognize species in these images, or at least filter‐out images that do not contain animals. These approaches are often...
Authors
Michael A. Tabak, Mohammad S. Norouzzadeh, David W. Wolfson, Erica J. Newton, Raoul K. Boughton, Jacob S. Ivan, Eric Odell, Eric S. Newkirk, Reesa Y. Conrey, Jennifer L. Stenglein, Fabiola Iannarilli, John Erb, Ryan K. Brook, Amy J. Davis, Jesse S. Lewis, Daniel P. Walsh, James C Beasley, Kurt C. Vercauteren, Jeff Clune, Ryan S. Miller

Ambrosia beetle (Coleoptera: Curculionidae) communities and frass production in ʻŌhiʻa (Myrtales: Myrtaceae) infected with Ceratocystis (Microascales: Ceratocystidaceae) fungi responsible for Rapid ʻŌhiʻa Death Ambrosia beetle (Coleoptera: Curculionidae) communities and frass production in ʻŌhiʻa (Myrtales: Myrtaceae) infected with Ceratocystis (Microascales: Ceratocystidaceae) fungi responsible for Rapid ʻŌhiʻa Death

Rapid ʻŌhiʻa Death (ROD) is a deadly disease that is threatening the native Hawaiian keystone tree species, ʻōhiʻa lehua (Metrosideros polymorpha Gaudich). Ambrosia beetles (Curculionidae: Scolytinae) and their frass are hypothesized to play a major role in the spread of ROD, although their ecological niches and frass production within trees and across the landscape are not well...
Authors
Kylle Roy, Kelly Jaenecke, Robert W. Peck

Distribution and abundance of Aquila chrysaetos (golden eagles) in East Contra Costa County Habitat Conservation Plan/Natural Community Conservation Plan area, California Distribution and abundance of Aquila chrysaetos (golden eagles) in East Contra Costa County Habitat Conservation Plan/Natural Community Conservation Plan area, California

The East Contra Costa County Habitat Conservation Plan/Natural Community Conservation Plan (HCP/NCCP) Preserve System was designed to protect and enhance ecological diversity and function in eastern Contra Costa County, California. Aquila chrysaetos (golden eagle) is a special-status species expected to benefit from biological goals of the HCP/NCCP. As part of a broader study, we...
Authors
J. David Wiens, Patrick S. Kolar, Douglas A. Bell

How plants influence resilience of salt marsh and mangrove wetlands to sea-level rise How plants influence resilience of salt marsh and mangrove wetlands to sea-level rise

This review evaluates the importance of plants and associated biological processes in determining the vulnerability of coastal wetlands to sea-level rise. Coastal wetlands occur across a broad sedimentary continuum from minerogenic to biogenic, providing an opportunity to examine the relative importance of biological processes in wetland resilience to sea-level rise. We explore how...
Authors
Donald R. Cahoon, Karen L. McKee, James Morris

Responding to ecosystem transformation: Resist, accept, or direct? Responding to ecosystem transformation: Resist, accept, or direct?

Ecosystem transformation can be defined as the emergence of a self‐organizing, self‐sustaining, ecological or social–ecological system that deviates from prior ecosystem structure and function. These transformations are occurring across the globe; consequently, a static view of ecosystem processes is likely no longer sufficient for managing fish, wildlife, and other species. We present a...
Authors
Laura Thompson, Abigail Lynch, Erik A. Beever, Agustin C. Engman, Jeffrey A. Falke, Stephen Jackson, Trevor J. Krabbenhoft, David J Lawrence, Douglas Limpinsel, Robert T. Magill, Tracy A. Melvin, John M. Morton, Robert A. Newman, Jay Peterson, Mark T. Porath, Frank J. Rahel, Suresh Sethi, Jennifer L. Wilkening

A manipulative thermal challenge protocol for adult salmonids in remote field settings A manipulative thermal challenge protocol for adult salmonids in remote field settings

Manipulative experiments provide stronger evidence for identifying cause-and-effect relationships than correlative studies, but protocols for implementing temperature manipulations are lacking for large species in remote settings. We developed an experimental protocol for holding adult Chinook salmon (Oncorhynchus tshawytscha) and exposing them to elevated temperature treatments. The...
Authors
Daniel S. Donnelly, Vanessa R. von Biela, Stephen D. McCormick, Sarah M. Laske, Michael P. Carey, Shannon C. Waters-Dynes, Lizabeth Bowen, Randy J Brown, Sean Larson, Christian E. Zimmerman

Comparison of anadromous and landlocked Atlantic salmon genomes reveals signatures of parallel and relaxed selection across the northern hemisphere Comparison of anadromous and landlocked Atlantic salmon genomes reveals signatures of parallel and relaxed selection across the northern hemisphere

Most Atlantic salmon (Salmo salar L.) populations follow an anadromous life cycle, spending early life in freshwater, migrating to the sea for feeding and returning to rivers to spawn. At the end of the last ice age ~10,000 years ago, several populations of Atlantic salmon became landlocked. Comparing their genomes to their anadromous counterparts can help identify genetic variation...
Authors
Erik Kjaerner-Semb, Rolf B Edvardsen, Fernando Ayllon, Petra Vogelsang, Tomasz Furmanek, Carl Johan Rubin, Alexey E. Vaselov, Tom Ole Nilsen, Stephen D. McCormick, Craig R Primmer, Anna Wargelius

Habitat suitability and ecological associations of two non-native ungulate species on the Hawaiian island of Lanai Habitat suitability and ecological associations of two non-native ungulate species on the Hawaiian island of Lanai

The ability to effectively manage game species for specific conservation objectives is often limited by the scientific understanding of their distribution and abundance. This is especially true in Hawai‘i where introduced game mammals are poorly studied and have low value relative to native species in other states. We modeled the habitat suitability and ecological associations of...
Authors
Steve C. Hess, Lucas Fortini, Christina Leopold, Jacob Muise, Jonathan Sprague

Testing a new passive acoustic recording unit to monitor wolves Testing a new passive acoustic recording unit to monitor wolves

As part of a broader trial of noninvasive methods to research wild wolves (Canis lupus) in Minnesota, USA, we explored whether wolves could be remotely monitored using a new, inexpensive, remotely deployable, noninvasive, passive acoustic recording device, the AudioMoth. We tested the efficacy of AudioMoths in detecting wolf howls and factors influencing detection by placing them at set...
Authors
Shannon Barber-Meyer, Vicente Palacios, Barbara Marti‐Domken, Lori Schmidt
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