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Publications

This list of publications includes peer-review journal articles, official USGS publications series, reports and more authored by scientists in the Ecosystems Mission Area. A database of all USGS publications, with advanced search features, can be accessed at the USGS Publications Warehouse.  

Filter Total Items: 42730

oSCR: A spatial capture–recapture R package for inference about spatial ecological processes oSCR: A spatial capture–recapture R package for inference about spatial ecological processes

Spatial capture–recapture (SCR) methods have become widely applied in ecology. The immediate adoption of SCR is due to the fact that it resolves some major criticisms of traditional capture–recapture methods related to heterogeneity in detectabililty, and the emergence of new technologies (e.g. camera traps, non‐invasive genetics) that have vastly improved our ability to collection...
Authors
Chris Sutherland, J. Andrew Royle, Dan Linden

Spatial integration of biological and social objectives to identify priority landscapes for waterfowl habitat conservation Spatial integration of biological and social objectives to identify priority landscapes for waterfowl habitat conservation

Waterfowl population management and habitat conservation compose one of the oldest and most successful adaptive management frameworks in the world. Since its inception, the North American Waterfowl Management Plan (NAWMP) has emphasized strategically targeted conservation investments in regions that most affect waterfowl population dynamics. By 2012, regional conservation had...
Authors
Anastasia Krainyk, James E. Lyons, Michael G. Brasher, Dale D. Humburg, Greg J. Souilliere, John M. Coluccy, Mark J. Petrie, David W. Howerter, Stuart M. Slattery, Mindy B. Rice, Joe C. Fuller

Monitoring long-term changes in forage fish distribution, abundance and body condition Monitoring long-term changes in forage fish distribution, abundance and body condition

We collected data on forage fish abundance, distribution and body condition in Prince William Sound, Alaska during summers in 2012 through 2016. This included acoustic – trawl surveys, aerial-acoustic surveys, opportunistic sampling where we encountered forage aggregations, and concurrent measurements of forage fish habitat. Acoustic indices of density suggest low abundance of age-0...
Authors
Mayumi L. Arimitsu, John F. Piatt

Control of invasive sea lampreys using the piscicides TFM and niclosamide: Toxicology, successes & future prospects Control of invasive sea lampreys using the piscicides TFM and niclosamide: Toxicology, successes & future prospects

The invasion of the Laurentian Great Lakes of North America by sea lampreys (Petromyzon marinus) in the early 20th century contributed to the depletion of commercial, recreational and culturally important fish populations, devastating the economies of communities that relied on the fishery. Sea lamprey populations were subsequently controlled using an aggressive integrated pest...
Authors
Michael Wilkie, Terrance Hubert, Michael A. Boogaard, Oana Birceanu

An integrated framework for ecological drought across riverscapes of North America An integrated framework for ecological drought across riverscapes of North America

Climate change is increasing the severity and extent of extreme droughts events, posing a critical threat to freshwater ecosystems, particularly with increasing human demands for diminishing water supplies. Despite the importance of drought as a significant driver of ecological and evolutionary dynamics, current understanding of drought consequences for freshwater biodiversity is very...
Authors
Ryan Kovach, Jason B. Dunham, Robert Al-Chokhachy, Craig Snyder, Erik A. Beever, Gregory T. Pederson, Abigail Lynch, Nathaniel P. Hitt, Christopher P. Konrad, Kristin L. Jaeger, Alan H. Rea, Adam J. Sepulveda, Patrick M. Lambert, Jason M. Stoker, J. Joseph Giersch, Clint C. Muhlfeld

Bryophyte abundance, composition and importance to woody plant recruitment in natural and restoration forests Bryophyte abundance, composition and importance to woody plant recruitment in natural and restoration forests

Restoration of tropical forests can lead to enhanced ecosystem services and increases in native biodiversity. Bryophytes may be an integral part of the forest restoration process and can serve a critical role in forest functioning. However, the recovery of bryophytes and their ability to facilitate woody plant establishment during restoration remains poorly studied, especially in the...
Authors
Evan M Rehm, Miles K Thomas, Stephanie G. Yelenik, Dave L Bouck, Carla M. D’Antonio

Resurgence of cisco (Coregonus artedi) population levels in Lake Michigan Resurgence of cisco (Coregonus artedi) population levels in Lake Michigan

In recent decades, many factors that were linked with the decline of Great Lakes cisco (Coregonus artedi) populations have subsided. The goal of this study was to investigate where cisco exist in Lake Michigan and evaluate evidence for recovery including when, where, and to what extent it is occurring. We evaluated datasets from several independent monitoring efforts that did and did not...
Authors
Randall M. Claramunt, Jason Smith, Kevin Donner, Annalise Povolo, Matthew E. Herbert, Tracy Galarowicz, Tracy L. Claramunt, Scott DeBoe, Wendylee Stott, Jory L. Jonas

Global patterns of tree stem growth and stand aboveground wood production in mangrove forests Global patterns of tree stem growth and stand aboveground wood production in mangrove forests

Mangrove forests provide important ecological and economic services including carbon sequestration and storage. The conservation and restoration of mangroves are expected to play an important role in mitigating climate change, and understanding the factors influencing mangrove stem growth and wood production are important in predicting and improving mangrove carbon sequestration and...
Authors
Yanmei Xiong, Roxelane Cakir, Sang Minh Phan, Anne Ola, Ken Krauss, Catherine E. Lovelock

Adult sockeye salmon (Oncorhynchus nerka) behavior and movement from Roza Dam to Cle Elum Dam, Washington, 2018 Adult sockeye salmon (Oncorhynchus nerka) behavior and movement from Roza Dam to Cle Elum Dam, Washington, 2018

An evaluation was conducted to describe adult sockeye salmon (Oncorhynchus nerka) upstream movement patterns from Roza Dam to Cle Elum Dam in the Yakima Basin, Washington. Sockeye salmon adults that arrive at Roza Dam are currently trapped and transported upstream of Cle Elum Dam because upstream fish-passage facilities are not currently in place at the dam. However, these facilities are...
Authors
Tobias J. Kock, Scott D. Evans, Brian K. Ekstrom, Amy C. Hansen

Developing an expert elicited simulation model to evaluate invasive species and fire management alternatives Developing an expert elicited simulation model to evaluate invasive species and fire management alternatives

Invasive species can alter ecosystem properties and cause state shifts in landscapes. Resource managers charged with maintaining landscapes require tools to understand implications of alternative actions (or inactions) on landscape structure and function. Simulation models can serve as a virtual laboratory to explore these alternatives and their potential impacts on a landscape. To be...
Authors
Catherine S. Jarnevich, Catherine Cullinane Thomas, Nicholas E. Young, Dana M. Backer, Sarah A. Cline, Leonardo Frid, Perry Grissom

Identifying the molecular signatures of agricultural expansion in Amazonian headwater streams Identifying the molecular signatures of agricultural expansion in Amazonian headwater streams

Agricultural impacts on aquatic ecosystems are well-studied, however, most research has focused on temperate regions, whereas the forefront of agricultural expansion is currently in the tropics. At the vanguard of this growth is the boundary between the Amazon and Cerrado biomes in Brazil, driven primarily by expansion of soybean and corn croplands. Here we examine the impacts of...
Authors
Robert G.M. Spencer, Anne M. Kellerman, David C. Podgorski, Marcia N. Macedo, Kathi Jo Jankowski, Darlisson Nunes, Christopher Neill

Integrated modeling reveals shifts in waterfowl population dynamics under climate change Integrated modeling reveals shifts in waterfowl population dynamics under climate change

1. Climate change has been identified as one of the most important drivers of wildlife populations. The development of appropriate conservation strategies relies on reliable predictions of population responses to climate change, which require in-depth understanding of the complex relationships between climate and population dynamics through density dependent demographic processes...
Authors
Qing Zhao, Scott Boomer, Andy Royle
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