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Publications

Browse more than 160,000 publications authored by our scientists over the past 100+ year history of the USGS.  Publications available are: USGS-authored journal articles, series reports, book chapters, other government publications, and more.

Filter Total Items: 175017

Observation of unusual neonate-clustering behavior on maternal Cambarus chasmodactylus (New River Crayfish) after molting Observation of unusual neonate-clustering behavior on maternal Cambarus chasmodactylus (New River Crayfish) after molting

Cambarus chasmodactylus (New River Crayfish) is one of the largest crayfish species occurring in the Appalachian Mountains and occupies a niche similar to several highly imperiled crayfishes within the same region. While conducting a controlled mesocosm study assessing the impacts of contaminants on crayfish growth, development, and reproductive status, we recorded an observation where...
Authors
Anna Marie Welsh, Zachary J. Loughman, Zackary A. Graham, Paula F. P. Henry

Integrating acoustic telemetry research into management: successes and challenges in the Laurentian Great Lakes Integrating acoustic telemetry research into management: successes and challenges in the Laurentian Great Lakes

In the Laurentian Great Lakes, the application of acoustic telemetry to track fish movements has evolved into an important part of multijurisdictional management. Nevertheless, barriers remain in translating telemetry research into management or conservation actions. Here, we synthesize acoustic telemetry literature within the Great Lakes basin to explore factors that have contributed to...
Authors
Natalie V. Klinard, Christopher S. Vandergoot, Andrew S. Briggs, Connor W. Elliott, Matthew D. Faust, David G. Fielder, Dimitry Gorsky, Travis Hartman, Christopher Holbrook, Daniel A. Isermann, Jonathan D. Midwood, Michael J. Siefkes, Justin VanDeHey, Dan Wilfond, Todd C. Wills, Troy Zorn, Ana P. Barbosa Martins, Arun Oakley-Cogan, Aaron T. Fisk, Jordan K. Matley

Characterization of the long-distance dispersal kernel of white-tailed deer and evaluating its impact on chronic wasting disease spread in Wisconsin Characterization of the long-distance dispersal kernel of white-tailed deer and evaluating its impact on chronic wasting disease spread in Wisconsin

Chronic wasting disease (CWD) is a fatal neurodegenerative disease infecting cervids. It is highly contagious and caused by misfolded prions that propagate via templated conformational conversion of the cervid’s normal prion protein. Prevalence of CWD in free-ranging deer in North America is mostly low, but in some regions local prevalence has reached 80%. CWD prions can be transmitted...
Authors
Gouda V. Mennatallah, Jim Powell, Jen McClure, Daniel P. Walsh, Daniel J. Storm

Genetic analysis of Missouri’s Topeka Shiners with implications for the propagation of understudied small-bodied freshwater fishes Genetic analysis of Missouri’s Topeka Shiners with implications for the propagation of understudied small-bodied freshwater fishes

Objective Best practices for conservation hatcheries to conserve genetic diversity and minimize adaptation to captivity have been established for decades, but how to apply them is not clear in every circumstance. As a growing number of aquatic species are propagated in captive settings, addressing the fit of these practices to each system will help managers operate optimally while...
Authors
Jessica Brooks, Leah K. Berkman, Meghan Zimmerschied, Douglas Novinger, Jerry Wiechman, Jacob Thomas Westhoff, Nathan L. Eckert, David D. Duvernell

Using peak geometry and shifts in the x-ray spectrum of carbon from electron probe microanalysis to determine thermal maturity of organic matter Using peak geometry and shifts in the x-ray spectrum of carbon from electron probe microanalysis to determine thermal maturity of organic matter

During the burial of mudstones, the associated organic matter undergoes gradual thermal maturation, a key process that can influence the reactivity of organic matter during catagenesis, the formation of hydrocarbon deposits and the chemical weathering of mudstones. Conventional methods for assessing the thermal maturity of organic matter often fail to reflect the geochemical...
Authors
Haolin Zhou, Gelu Costin, Justin E. Birdwell, Paul C. Hackley, Daniel Minisini, Tanguy Terlier, Mark A. Torres

Rapid recovery of an arctic lake ecosystem from a pulse disturbance caused by thermokarst failure Rapid recovery of an arctic lake ecosystem from a pulse disturbance caused by thermokarst failure

Due to rapid climate change, arctic ecosystems are experiencing an increase in disturbances including localized land-surface failures caused by melting ground ice (thermokarst failures). These failures result in the mass transport of sediment and organic materials into surface waters, with the potential to dramatically alter aquatic ecosystem function and biotic interactions. We coupled...
Authors
Phaedra E. Budy, Casey A. Pennock, Sarah Messenger, Hunter Pehrson, Emily Adler, Gary P. Thiede, Natasha R. Christman, Byron C. Crump, Anne E. Giblin, George W. Kling

Using complementary biomarkers to unravel fish lifetime exposure to hypoxia and mercury Using complementary biomarkers to unravel fish lifetime exposure to hypoxia and mercury

Aquatic ecosystems are losing oxygen due to climate change. This deoxygenation can favor microbial methylation of mercury (Hg). To understand the dynamics of Hg under increasing deoxygenation, we simultaneously quantified both Hg and hypoxia ( 2 mg O2/L) lifetime chronologies in fishes. We used a novel combination of chemical biomarkers in ear stones and eye lenses. We compared these...
Authors
Hadis Miraly, N. Roxanna Razavi, Richard Kraus, Ann Marie Gorman, Elizabeth Duskey, Matthew Altenritter, Karin E. Limburg

Biocrust mosses and cyanobacteria exhibit distinct carbon uptake responses to variations in precipitation amount and frequency Biocrust mosses and cyanobacteria exhibit distinct carbon uptake responses to variations in precipitation amount and frequency

Dryland organisms exhibit varied responses to changes in precipitation, including event size, frequency, and soil moisture duration, influencing carbon uptake and reserve management strategies. This principle, central to the pulse-reserve paradigm, has not been thoroughly evaluated in biological soil crusts (biocrusts), essential primary producers on dryland surfaces. We conducted two...
Authors
Kristina E. Young, Osvaldo E. Sala, Anthony Darrouzet-Nardi, Colin L Tucker, Rebecca A Finger-Higgens, Megan Elyse Starbuck, Sasha C. Reed

Calibration of the Stream Salmonid Simulator (S3) model to estimate annual survival, movement, and food consumption by juvenile Chinook salmon (Oncorhynchus tshawytscha) in the restoration reach of the Trinity River, California, 2006–18 Calibration of the Stream Salmonid Simulator (S3) model to estimate annual survival, movement, and food consumption by juvenile Chinook salmon (Oncorhynchus tshawytscha) in the restoration reach of the Trinity River, California, 2006–18

Executive Summary The Trinity River is managed in two sections: (1) from the upper 64-kilometer “restoration reach” downstream from Lewiston Dam to the confluence with the North Fork Trinity River, and (2) the 120-kilometer lower Trinity River downstream from the restoration reach. The Stream Salmonid Simulator (S3) has been previously applied to these reaches and the Klamath River. To...
Authors
John M. Plumb, Russell W. Perry, Kyle De Juilio

New technology for an ancient fish: A lamprey life cycle modeling tool with an R Shiny application New technology for an ancient fish: A lamprey life cycle modeling tool with an R Shiny application

Lampreys (Petromyzontiformes) are an ancient group of fishes with complex life histories. We created a life cycle model that includes an R Shiny interactive web application interface to simulate abundance by life stage. This will allow scientists and managers to connect available demographic information in a framework that can be applied to questions regarding lamprey biology and...
Authors
Dylan Gerald-Everett Gomes, Joseph R. Benjamin, Benjamin J. Clemens, Ralph Lampman, Jason B. Dunham

Regional analysis of the dependence of peak-flow quantiles on climate with application to adjustment to climate trends Regional analysis of the dependence of peak-flow quantiles on climate with application to adjustment to climate trends

Standard flood-frequency analysis methods rely on an assumption of stationarity, but because of growing understanding of climatic persistence and concern regarding the effects of climate change, the need for methods to detect and model nonstationary flood frequency has become widely recognized. In this study, a regional statistical method for estimating the effects of climate variations...
Authors
Thomas M. Over, Mackenzie K. Marti, Hannah Lee Podzorski

The Hardscrabble Creek complex: A newly discovered, mostly buried, Mesoproterozoic mafic-ultramafic pluton in the Wet Mountains, Colorado, USA The Hardscrabble Creek complex: A newly discovered, mostly buried, Mesoproterozoic mafic-ultramafic pluton in the Wet Mountains, Colorado, USA

The origin of prolific ca. 1.4 Ga ferroan magmatism between the southwestern USA and eastern Canada is enigmatic and has been explained by various models, including extensional, mantle plume, and convergent plate-margin models. Rare mafic plutons are associated with the ferroan plutons, which may help constrain their mantle source and tectonic setting. In the southwestern USA, only two...
Authors
Benjamin Patrick Magnin, Sandra S. Brake, Yvette Kuiper, Michael T. Mohr, Richard E. Hanson
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