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Publications

Browse more than 160,000 publications authored by our scientists over the past 100+ year history of the USGS.  Publications available are: USGS-authored journal articles, series reports, book chapters, other government publications, and more.

Filter Total Items: 176717

Improved abundance trajectories with Bayesian population dynamics model: Case study with a Hawaiian honeycreeper Improved abundance trajectories with Bayesian population dynamics model: Case study with a Hawaiian honeycreeper

Many wildlife monitoring programmes collect annual data on population abundance. The resulting abundance estimates fluctuate over time partly because of true population change and partly because of observation error. These two components of variation can be separated by fitting the estimates to a population dynamics model within a Bayesian state-space modelling framework. By constraining...
Authors
Richard J. Camp, Len Thomas, Steve T. Buckland, Steve J. Kendall

Improved estimates of relative occurrence and abundance using opportunistic surveys and presence-only observations: A zero-inflated integrated species distribution model Improved estimates of relative occurrence and abundance using opportunistic surveys and presence-only observations: A zero-inflated integrated species distribution model

Modeling tools for estimating and forecasting shifts in species distributions are becoming increasingly valuable for conservation planning and response. This is especially true for wild bird populations, which have been declining across habitats and regions. Species distribution models (SDM) represent a diverse set of tools with options for addressing various sources of bias. Complex...
Authors
Jennifer Mullinax, Matthew Brandon Gonnerman, Jeffery D. Sullivan, Cody M. Kent, Diann J. Prosser

Improving offshore 3D splay fault geometries and slip histories using seismic data reprocessing and structural modeling Improving offshore 3D splay fault geometries and slip histories using seismic data reprocessing and structural modeling

The goal of this project as written in the CRESCENT seed grant proposal was as follows: 1) reprocess selected profiles along strike from 45° to 48°N from the CASIE21 crustal-scale seismic data to obtain higher-resolution and higher-quality imaging of the uppermost 1-2 km of the accretionary wedge; 2) convert high-resolution USGS sparker seismic data from the time to depth domain to...
Authors
Anna M. Ledeczi, Nathaniel C. Miller, Harold J. Tobin, Cailey B. Condit

Incorporating data sets with multiple sources of uncertainty in integrated species distribution models Incorporating data sets with multiple sources of uncertainty in integrated species distribution models

Data integration methods aim to improve species distribution estimates by incorporating multiple sources of uncertainty across datasets. Two major sources of uncertainty are: (1) variation in sampling effort across space and within datasets, and (2) variation in reliability associated with data collection protocols or timing among datasets. Our goal was to evaluate how different...
Authors
Fiona Lunt, C. Lane Scher, Riley Olivia Mummah, David A.W. Miller

Incorporating location uncertainty improves inference with stop-level North American Breeding Bird Survey data Incorporating location uncertainty improves inference with stop-level North American Breeding Bird Survey data

Ecological models should account for uncertainty to be most effective and useful. Yet, uncertainty from model covariates—unlike that from other sources, such as sampling error or process variability—is seldom explicitly incorporated. This can cause underestimates of uncertainty to cascade through model parameter estimates, predictions, and downstream uses. Burner et al. proposed a method...
Authors
Ryan C. Burner, J. A. Hostetler, Alan Kirschbaum

Increasing density from population recovery does not explain elevated partial brood loss in a threatened cooperative breeder Increasing density from population recovery does not explain elevated partial brood loss in a threatened cooperative breeder

Partial brood loss in Dryobates borealis (Red-cockaded Woodpecker), a federally threatened cooperative breeder in the USA, was not associated with increases in population density. Across three populations—Sandhills, North Carolina; Marine Corps Base Camp Lejeune, North Carolina; and Eglin Air Force Base, Florida—we documented no support for density-dependent effects on either early or...
Authors
Lauren D. Pharr, Christopher E. Moorman, Nathan J. Hostetter, Clyde E. Sorenson, Jeffrey R. Walters, Caren B. Cooper

Indicators of mercury concentration in Lake Trout: Can fish location and appearance provide information to anglers to reduce their exposure? Indicators of mercury concentration in Lake Trout: Can fish location and appearance provide information to anglers to reduce their exposure?

Objective People are exposed to mercury (Hg) through the consumption of fish. State and federal governments provide broad, often-generalized food safety guidance to reduce exposure; however, numerous rural fishing areas lack testing and location- or species-specific guidance. The aim of this study was to provide tangible, visible, or easily measured characteristics of Lake Trout...
Authors
Sarah M. Laske, Daniel Young, Krista K. Bartz, Vanessa R. von Biela, Michael P. Carey

Indirect mineral import reliance and provenance Indirect mineral import reliance and provenance

Mineral commodity supply chain analyses rely on international trade data reported by individual countries as quantities of a mineral commodity form imported from (or exported to) a partner. However, export quantities frequently exceed a country’s domestic production, or occur when no production data are reported, suggesting that the trade partner is merely an intermediary in a...
Authors
Jamie L. Brainard, Andrew L. Gulley, Nedal T. Nassar

Individual encounter data of six African carnivore species optimized for multi-species density estimation Individual encounter data of six African carnivore species optimized for multi-species density estimation

The ability to estimate abundances of multiple wildlife species within an area is valuable for both conservation and ecological inquiry. Spatially explicit capture–recapture (SCR) methods are commonly used to obtain reliable population size estimates, particularly for low-density and individually identifiable carnivore species. However, estimating abundance within multi-species...
Authors
Laura Christine Gigliotti, Gates Dupont, Chris Sutherland, Charli Pretorius, Simon Naylor, Kerrin Allan, Gonçalo Curveira-Santos

Inference of pattern-based geological CO2 sequestration and oil recovery potential in a commingled main pay and residual oil zone CO2-EOR flood Inference of pattern-based geological CO2 sequestration and oil recovery potential in a commingled main pay and residual oil zone CO2-EOR flood

Several detailed studies have shown that residual oil zones (ROZs) can present significant resources for additional hydrocarbon recovery as well as subsurface carbon dioxide (CO2) sequestration via enhanced oil recovery by injecting CO2 (CO2-EOR). Field development strategies included new wells drilled dedicated to main pay zones (MPZ) and ROZs, or existing wells in MPZs deepened to ROZs...
Authors
C. Özgen Karacan, Emil Attanasi, Sean T. Brennan, Peter D. Warwick

Influence of modeling assumptions on pedestrian evacuation success for non-eruptive lahar hazards at Mount Rainier, Washington Influence of modeling assumptions on pedestrian evacuation success for non-eruptive lahar hazards at Mount Rainier, Washington

Previous efforts to characterize lahar threats posed to communities downstream of volcanoes have focused primarily on delineating hazard zones that lack information on lahar-arrival times and exposure estimates that implicitly treat threats to be the same regardless of distance from the volcano. Estimated lahar-arrival times, travel times for individuals to leave hazard zones, and...
Authors
Nathan J. Wood, Jeff Peters

Informing policy response to declining water supply in the Colorado River basin: Linking water supply management with outcomes for fish communities Informing policy response to declining water supply in the Colorado River basin: Linking water supply management with outcomes for fish communities

Water-supply managers in the Colorado River Basin are tasked with balancing consumptive water use with natural water supply. Decisions associated with water-supply policy can include where and how much water consumption occurs, where water could be stored, and how to operate reservoirs. Water-supply decisions often affect other resources including energy production, recreation and...
Authors
John C. Schmidt, Charles B. Yackulic
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