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Publications

Browse more than 160,000 publications authored by our scientists over the past 100+ year history of the USGS.  Publications available are: USGS-authored journal articles, series reports, book chapters, other government publications, and more.

Filter Total Items: 175531

Autonomous samplers and environmental DNA metabarcoding: Sampling day and primer choice have greatest impact on fish detection probabilities Autonomous samplers and environmental DNA metabarcoding: Sampling day and primer choice have greatest impact on fish detection probabilities

Unprecedented rates of biodiversity loss and ecosystem function necessitate the use of rapid, efficacious, and cost-effective biomonitoring tools. The combination of autonomous samplers and high throughput sequencing (i.e., “metabarcoding”) of environmental DNA (eDNA) samples enables characterization of entire communities at high frequency and can be an important tool for conservation...
Authors
Devin Nicole Jones-Slobodian, Ben Augustine, Patrick Ross Hutchins, James M. Birch, Kevan Yamahara, Scott L. Jensen, Rodney T. Richardson, Regina Trott, James Campbell, Elliott P. Barnhart, Adam Sepulveda

Glacier National Park bumble bee survey report 2023 Glacier National Park bumble bee survey report 2023

Glacier National Park's grasslands provide important contributions to the character and ecology of the park. In 1999-2001, Glacier National Park (hereafter, the park) established 155 permanent vegetation monitoring plots to inventory grassland vegetation communities east of the Continental Divide. In June of 2023, the Blackfeet Nation (Amskapi Piikuni) re-introduced a herd of free...
Authors
Lindsay Marie Dose, Erica Sanderleaf Sarro Gustilo, Tabitha A. Graves

Prioritizing imperiled native aquatic species for conservation propagation Prioritizing imperiled native aquatic species for conservation propagation

Native aquatic species are in decline, and hatcheries can play an important role in stemming these losses until larger ecological issues are addressed. However, as more federal and state agencies face budget uncertainty and the number of imperiled species increases, it is necessary to develop a tool to prioritize species for conservation propagation. Our objective was to create...
Authors
Molly A. H. Webb, Christopher S. Guy, Hilary B. Treanor, Krissy W. Wilson, Cassie D. Mellon, Paul Abate, Harry J. Crockett, Jordan Hofmeier, Chelsey Pasbrig, Patrick Isakson

Upper thermal tolerances of two native and one invasive crayfish in Missouri, USA Upper thermal tolerances of two native and one invasive crayfish in Missouri, USA

The spread of invasive crayfish requires invaded habitats to be thermally suitable, and differences in thermal tolerances among species could provide thermal refugia for native crayfish affected by the invader. We estimated upper thermal tolerances for the invasive Faxonius hylas and native F. peruncus and F. quadruncus in Missouri, USA, using critical thermal maxima (CTmax) methodology...
Authors
Jacob Thomas Westhoff, Hisham A. Abdelrahman, James A. Stoeckel

Working together to advance subduction zone science within SZ4D and the USGS Working together to advance subduction zone science within SZ4D and the USGS

OnSunday, December 10, 2023, the U.S. Geological Survey (USGS) and Subduction Zones in Four Dimensions (SZ4D) co-hosted a workshop titled “Working Together to Advance Subduction Zone Science within SZ4D and the USGS”. The workshop attracted ~80 participants, with ~11 attendees from the USGS and ~17 participants from outside the United States Organizations represented included the...
Authors
Joan S. Gomberg, Erin A. Wirth, Janet Watt, Alex R. Grant, Micheal Brudzinski, Magali Billen

GeoAI for spatial image processing GeoAI for spatial image processing

The development of digital image processing, as a subset of digital signal processing, depended upon the maturity of photography and image science, introduction of computers, discovery and advancement of digital recording devices, and the capture of digital images. In addition, government and industry applications in the Earth and medical sciences were paramount to the growth of the...
Authors
Samantha T. Arundel, Kevin G McKeehan, Wenwen Li, Zhining Gu

Advancing subsurface investigations beyond the borehole with passive seismic horizontal-to-vertical spectral ratio and electromagnetic geophysical methods at transportation infrastructure sites in New Hampshire Advancing subsurface investigations beyond the borehole with passive seismic horizontal-to-vertical spectral ratio and electromagnetic geophysical methods at transportation infrastructure sites in New Hampshire

The U.S. Geological Survey (USGS), in cooperation with the New Hampshire Department of Transportation (NHDOT), surveyed transportation infrastructure sites using rapidly deployable geophysical methods to assess benefits added to a comprehensive site characterization with traditional geotechnical techniques. Horizontal-to-vertical spectral-ratio (HVSR) passive-seismic and electromagnetic...
Authors
James R. Degnan, Krystle Pelham, Neil C. Terry, Sydney M. Welch, Carole D. Johnson

A characterization of the deep-sea coral and sponge community along the Oregon Coast using a remotely operated vehicle on the EXPRESS 2022 expedition A characterization of the deep-sea coral and sponge community along the Oregon Coast using a remotely operated vehicle on the EXPRESS 2022 expedition

Deep-sea coral and sponge (DSCS) communities serve as essential fish habitat (EFH) by providing shelter and nursery habitat, increasing diversity, and increasing prey availability (Freese and Wing, 2003; Bright, 2007; Baillon et al., 2012; Henderson et al., 2020). Off the U.S. West Coast, threats to these long-lived, fragile organisms from bottom contact fishing gear, potential offshore...
Authors
Tom Laidig, Diana Watters, Meredith Everett, Nancy G. Prouty, Elizabeth Clarke

Hawaiian volcanic ash, an airborne fomite for nontuberculous mycobacteria Hawaiian volcanic ash, an airborne fomite for nontuberculous mycobacteria

Nontuberculous mycobacteria (NTM) are environmentally acquired opportunistic pathogens that can cause chronic lung disease. Within the U.S., Hawai'i shows the highest prevalence rates of NTM lung infections. Here, we investigated a potential role for active volcanism at the Kīlauea Volcano located on Hawai'i Island in promoting NTM growth and diversity. We recovered NTM that are known to...
Authors
Stephanie Dawrs, Ravleen Virdi, Grant Norton, Tamar Elias, Nabeeh Hasan, Schuyler Robinson, Jobel Matriz, L. Elaine Epperson, Cody Glickman, Sean Beagle, James L Crooks, Stephen T. Nelson, Edward Chan, David Damby, Michael Strong, Jennifer Honda

Variable climate-growth relationships of quaking aspen (Populus tremuloides) among Sky Island mountain ranges in the Great Basin, Nevada, USA Variable climate-growth relationships of quaking aspen (Populus tremuloides) among Sky Island mountain ranges in the Great Basin, Nevada, USA

The Great Basin is an arid province located in the interior western United States. The region encompasses millions of hectares and quaking aspen (Populus tremuloides Michx.) forests comprise a minor portion of the total area. However, montane aspen forests play a disproportionately large role in providing ecosystem services in the region, including water retention, biodiversity, wildlife...
Authors
Martin Senfeldr, Douglas J. Shinneman, Susan K. McIlroy, Paul Rogers, R. Justin DeRose

The Coastal Carbon Library and Atlas: Open source soil data and tools supporting blue carbon research and policy The Coastal Carbon Library and Atlas: Open source soil data and tools supporting blue carbon research and policy

Quantifying carbon fluxes into and out of coastal soils is critical to meeting greenhouse gas reduction and coastal resiliency goals. Numerous ‘blue carbon’ studies have generated, or benefitted from, synthetic datasets. However, the community those efforts inspired does not have a centralized, standardized database of disaggregated data used to estimate carbon stocks and fluxes. In this...
Authors
James R. Holmquist, David H. Klinges, Michael Lonneman, Jaxine Wolfe, Brandon M. Boyd, Meagan J. Eagle, Jonathan Sanderman, Katherine Todd-Brown, Lauren N. Brown, E. Fay Belshe, Samantha K. Chapman, Ron Corstanje, Christopher N. Janousek, James T. Morris, Gregory E. Noe, Andre S. Rovai, Amanda C. Spivak, Megan Vahsen, Lisamarie Windham-Myers, Kevin D. Kroeger, Patrick Megonigal
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