Publications
Browse more than 160,000 publications authored by our scientists over the past 100+ year history of the USGS. Publications available are: USGS-authored journal articles, series reports, book chapters, other government publications, and more.
Mission Area Publications
Mission Area Publications
We are focused on some of the most significant issues society faces, and our science is making a substantial contribution to the well-being of the Nation and the world. Learn more about the major topics our research covers and the programs focused on those topics.
Filter Total Items: 175006
Model-based surveillance system design under practical constraints with application to white-nose syndrome Model-based surveillance system design under practical constraints with application to white-nose syndrome
Infectious diseases are powerful ecological forces structuring ecosystems, causing devastating economic impacts and disrupting society. Successful prevention and control of pathogens requires knowledge of the current scope and severity of disease, as well as the ability to forecast future disease dynamics. Assessment of the current situation as well as prediction of the future conditions...
Authors
Gina Oh, Srikanth Aravamuthan, Ting Fung Ma, Juan Francisco Mandujano Juan Francisco Reyes, Anne Ballmann, Trevor J. Hefley, Ian McGahan, Robin Russell, Daniel P. Walsh, Juntao Zhu
High pathogenicity avian influenza represents an unprecedented conservation challenge for globally declining seabird populations. Response to: Editorial, Protect wildlife from livestock diseases (Thijs Kuiken & Ruth Cromie) High pathogenicity avian influenza represents an unprecedented conservation challenge for globally declining seabird populations. Response to: Editorial, Protect wildlife from livestock diseases (Thijs Kuiken & Ruth Cromie)
No abstract available.
Authors
Michelle Wille, Stephanie Avery-Gomm, Valentina Caliendo, Kees Camphuysen, E. Humphreys, Andrew Lang, Emma Philip, Andrew M. Ramey, Jolianne M. Rijks, Gregory Robertson, Laura Robertson
Isothermal recombinant polymerase amplification and CRIPSR (CAS12A) assay detection of Renibacterium salmoninarum as an example for wildlife pathogen detection in environmental DNA samples Isothermal recombinant polymerase amplification and CRIPSR (CAS12A) assay detection of Renibacterium salmoninarum as an example for wildlife pathogen detection in environmental DNA samples
Improving rapid detection methods for pathogens is important for research as we collectively aim to improve the health of ecosystems globally. In the northern hemisphere, the success of salmon (Oncorhynchus spp.) populations is vitally important to the larger marine, aquatic, and terrestrial ecosystems they inhabit. This has led to managers cultivating salmon in hatcheries and...
Authors
Erin D’Agnese, Dorothy M. Chase, Elizabeth Andruszkiewicz-Allan
Evolutionary and ecological correlates of thiaminase in fishes Evolutionary and ecological correlates of thiaminase in fishes
Thiamine (vitamin B1) is required by all living organisms in multiple metabolic pathways. It is scarce in natural systems, and deficiency can lead to reproductive failure, neurological issues, and death. One major cause of thiamine deficiency is an overreliance on diet items containing the enzyme thiaminase. Thiaminase activity has been noted in many prey fishes and linked to cohort...
Authors
Freya Elizabeth Rowland, Cathy A. Richter, Donald E Tillitt, David Walters
Climate, heatwaves, nearshore ecosystems and the sunflower sea star Climate, heatwaves, nearshore ecosystems and the sunflower sea star
At the nexus of the ocean and the land lies the nearshore ecosystem, which includes the intertidal zone, an area exposed during low tides and submerged during high tides. Species in the intertidal are adapted to a high level of environmental variability including high temperatures, waves, and salinity variability. Species’ tolerance to desiccation in part determines the elevation within...
Authors
Sarah Beth Traiger, Robert M. Suryan, Heather A. Coletti, Daniel Esler
A watershed moment for western U.S. dams A watershed moment for western U.S. dams
The summer of 2023 is a notable time for water-resource management in the western United States: Glen Canyon Dam, on the Colorado River, turns 60 years old while the largest dam-removal project in history is beginning on the Klamath River. This commentary discusses these events in the context of a changing paradigm for dam and reservoir management in this region. Since the era of large...
Authors
Amy E. East, Gordon E. Grant
Disinfection protocols for herpetofaunal pathogens Disinfection protocols for herpetofaunal pathogens
The spread of disease-causing pathogens is a major threat to amphibians and reptiles worldwide (Converse and Greene 2005; Picco et al. 2007; Picco and Collins 2008; St-Amour et al. 2008; O’Hanlon et al. 2018; Scheele et al. 2019). The World Organisation for Animal Health’s global list of notifiable animal diseases includes herpetofaunal diseases caused by infection with Ranavirus spp....
Authors
Molly C. Bletz, James T. Julian, Megan S. Kirchgessner, James M. Drasher, Paula F. P. Henry, Susan D. Jewell, Pamela T. Meier, Kathy Michelle, Jennifer C. Olori, Kevin J. Oxenrider, Michael J. Ravesi, Scott A. Smith
A mixture of Nalbuphine, Azaperone, and Medetomidine for Immobilizing Ringtail (Bassariscus astutus) A mixture of Nalbuphine, Azaperone, and Medetomidine for Immobilizing Ringtail (Bassariscus astutus)
We evaluated a combination of nalbuphine HCl (40 mg/mL), azaperone tartrate (10 mg/mL), and medetomidine HCl (10 mg/mL), a combination known as NAM or NalMed-A, in 23 ringtails (Bassariscus astutus) during 29 handling events for a radio-collaring study in southern Oregon, US, from August 2020 to March 2022. The combination was delivered to ringtails by hand injection at 0.075 mL NAM per...
Authors
Lindsay N. Somers, DeWaine H. Jackson, Katie Dugger, Julia D. Burco
Elevation, canopy cover and grass cover structure patterns of seedling establishment in a subtropical post-fire restoration Elevation, canopy cover and grass cover structure patterns of seedling establishment in a subtropical post-fire restoration
Ecological restoration is beneficial to ecological communities in this era of large-scale landscape change and ecological disruption. However, restoration outcomes are notoriously variable, which makes fine-scale decision-making challenging. This is true for restoration efforts that follow large fires, which are increasingly common as the climate changes.Post-fire restoration efforts...
Authors
Christopher Warneke, Lars Brudvig, Makani Gregg, Sierra McDaniel, Stephanie G. Yelenik
Historically active volcanoes of Alaska reference deck Historically active volcanoes of Alaska reference deck
No abstract available.
Authors
Cheryl E. Cameron, Kristen A. H. Janssen, Tim R. Orr, Matthew W. Loewen
Submersed macrophyte density regulates aquatic greenhouse gas emissions Submersed macrophyte density regulates aquatic greenhouse gas emissions
Shallow freshwater ecosystems emit large amounts of greenhouse gases (GHGs), such as carbon dioxide (CO2) and methane (CH4), yet emissions are highly variable. The role that aquatic macrophytes play in regulating aquatic GHG emissions is uncertain despite their ability to dominate shallow waterbodies. Here, we studied the effects of submersed macrophyte (Ceratophyllum demersum) density...
Authors
Meredith E. Theus, Nicholas E. Ray, Sheel Bansal, Meredith A. Holgerson
Evidence for infection influencing survival of the freshwater copepod Salmincola californiensis, a parasite of Pacific salmon and trout Evidence for infection influencing survival of the freshwater copepod Salmincola californiensis, a parasite of Pacific salmon and trout
Objective We explore apparent infection of Salmincola californiensis arising during investigations involving this lernaeopodid copepod parasitic on Pacific salmon and trout Oncorhynchus spp.Methods We noted occasional unusual coloration of adult female copepods collected from the wild. These females were bright blue and pink in contrast to the cream white coloration characteristic of the...
Authors
Christina Amy Murphy, William Gerth, Travis Neal, Kelsi Antonelli, Justin L. Sanders, Ivan Arismendi