Dr. Hansen is a Research Immunologist at the Western Fisheries Research Center. His laboratory utilizes a basic research, comparative approach to understand host-pathogen interactions in fish and the impact of environmental stressors on fish and wildlife health.
Research Interests:
Our research team at the WFRC focuses on mediators of inflammation, host-pathogen interactions, and the impact of environmental stressors on fish health. We are particularly interested in how early life and sub-lethal exposure to environmental contaminants affect disease resistance. We focus on Pacific salmon and employ current molecular and biochemical approaches. In addition, we have developed specific research projects that utilize zebrafish. Zebrafish represent an attractive model organism for studies involving fish and vertebrate health owing to the availability and utility of their genomic and genetic resources as well as an abundance of established pathogen challenge protocols for zebrafish.
Current projects include assessing virulence factors for Francisella noatunensis (a fish-specific pathogen) and projects designed to address the effect of specific environmental contaminants including mercury, PFAS, PCBs, and algal toxins on metabolism, disease resistance, and the host microbiome. We are committed to addressing the effects of stormwater runoff (e.g., 6PPDQ) on salmon health. These research efforts have translational value for fish, wildlife, and human health around the world. Our goal is to better understand how the compound effects of pathogens, stressors, and the host immune response contribute to fish health and how this information can be applied to protect vertebrate health everywhere.
Current Laboratory Members:
- Ellie Dalsky, Biological Science Technician
- Justin Greer, Ph.D. Computational Biologist
- Kincer Crovetti, UW Student Contractor
- Prarthana Shakar, Ph.D. Biologist
- Yo Okumura, Ph.D. Postdoctoral fellow co-mentored with Ram Savan, UW Immunology
Professional Experience
2004 to Present - Research Immunologist, U.S. Geological Survey, Western Fisheries Research Center, Seattle, WA
2004 to Present – Affiliate Associate Professor, Pathobiology, University of Washington, Seattle, WA
2001 to 2004 – Assistant Professor, Immunology, University of MD Biotechnology Institute
1995 to 2001 – Member, Basel Institute for Immunology, Basel Switzerland
Education and Certifications
Postdoc. Basel Institute for Immunology, Basel, Switzerland
Ph.D. Genetics/Immunology, Department of Microbiology, Oregon State University, Corvallis, OR
B.S. Zoology and Chemistry, University of Wisconsin-Eau Claire, Eau Claire, WI
Science and Products
COVID-19 Pathways and Wildlife Dynamics
Immunomodulation Science Team
Zebrafish (Danio rerio) - FHP
Assessing cell line models for species differences in 6PPD-quinone sensitivity
Physiological and molecular endpoints observed in juvenile largemouth bass in response to an estrogen (17α-ethinylestradiol) and subsequently a bacterial challenge (Edwardsiella piscicida) exposure under laboratory conditions.
Disruption of Francisella noatunensis orientalis pdpA gene results in virulence attenuation and protection in zebrafish
Cyanobacterial toxin effects on inflammatory response of human toll-like receptors (TLRs)
Establishing an in vitro model to assess the toxicity of 6PPD-quinone and other tire wear transformation products
Exposure to 17α-ethinylestradiol results in differential susceptibility of largemouth bass (Micropterus salmoides) to bacterial infection
Evaluation of Francisella orientalis ΔpdpA as a live attenuated vaccine against piscine Francisellosis in Nile tilapia
From IgZ to IgT: A call for a common nomenclature for immunoglobulin heavy chain genes of ray-finned fish
Disruption of the Francisella noatunensis orientalis pdpA gene results in virulence attenuation and protection in zebrafish
Neither microcystin, nor nodularin, nor cylindrospermopsin directly interact with human toll-like receptors
Genomic architecture and repertoire of the rainbow trout immunoglobulin light chain genes
Effect of growth rate on transcriptomic responses to immune stimulation in wild-type, domesticated, and GH-transgenic coho salmon
Characterization of immunoglobulin light chain utilization and variable family diversity in rainbow trout
Generation of lamprey monoclonal antibodies (Lampribodies) using the phage display system
Standardized IMGT nomenclature of salmonidae IGH genes, the paradigm of Atlantic salmon and rainbow trout: From genomics to repertoires
Preface to the special issue “Impact of omics on comparative immunology”
Science and Products
- Science
COVID-19 Pathways and Wildlife Dynamics
Below are the USGS 2020 Coronavirus Aid, Relief and Economic Security Act (CARES Act) research projects related to COVID-19 pathways and wildlife dynamics. Select tabs above for related items.Immunomodulation Science Team
The Immunomodulation Integrated Science Team focuses on contaminant and pathogen exposures in the environment that might influence the immune systems of wildlife and the connection to their shared environment with humans. In collaboration with public-health officials, the Team also addresses potential human-health risks stemming from similar exposures. If actual risks are identified, this Team...Zebrafish (Danio rerio) - FHP
This fish species has become a powerful model organism for the study of vertebrate biology, developmental and genetic research, and more recently infectious disease studies. - Data
Assessing cell line models for species differences in 6PPD-quinone sensitivity
Coho salmon have been shown to be highly sensitive to the tire transformation chemical 6PPD-quinone, with concentrations contained in stormwater sufficient to induce mortality in up to 90% of the entire fall coho run. Other salmonid species (chinook, sockeye, chum) are much less sensitive to 6PPD-quinone induced mortality. This data examines the varying species sensitivities across salmoids usingPhysiological and molecular endpoints observed in juvenile largemouth bass in response to an estrogen (17α-ethinylestradiol) and subsequently a bacterial challenge (Edwardsiella piscicida) exposure under laboratory conditions.
Physiological and molecular endpoints observed in juvenile largemouth bass in response to an estrogen (17α-ethinylestradiol) and subsequently a bacterial challenge (Edwardsiella piscicida) exposure under laboratory conditions. Also included are water quality and chemical concentration data.Disruption of Francisella noatunensis orientalis pdpA gene results in virulence attenuation and protection in zebrafish
Several Francisella spp. including F. noatunensis are regarded as important emerging pathogens of wild and farmed fish. However, very few studies have investigated the virulence factors that allow these bacterial species to be pathogenic in fish. The Francisella Pathogenicity Island (FPI) is a well-described, gene-dense region encoding major virulence factors for the genus Francisella. PdpA is a mCyanobacterial toxin effects on inflammatory response of human toll-like receptors (TLRs)
Various stressors including temperature, environmental chemicals and toxins can have profound impacts on immunity to pathogens. It is believed that increased eutrophication near rivers and lakes coupled with climate change are predicted to lead to increased algal blooms. Currently, the effects of cyanobacterial toxins on disease resistance in mammals is a largely unexplored area of research. Impor - Multimedia
- Publications
Filter Total Items: 43
Establishing an in vitro model to assess the toxicity of 6PPD-quinone and other tire wear transformation products
The tire wear transformation product 6PPD-quinone (6PPDQ) has been implicated as the causative factor for broad scale mortality events for coho salmon in the Pacific Northwest. Highly variable sensitivity to 6PPDQ in closely related salmonids complicates efforts to evaluate the broader toxicological impacts to aquatic ecosystems. Our goals were to (1) validate the large range of in vivo species seAuthorsJustin Blaine Greer, Ellie Maureen Dalsky, Rachael F. Lane, John HansenExposure to 17α-ethinylestradiol results in differential susceptibility of largemouth bass (Micropterus salmoides) to bacterial infection
Disease outbreaks, skin lesions, mortality events, and reproductive abnormalities have been observed in wild populations of centrarchids. The presence of estrogenic endocrine disrupting compounds (EEDCs) has been implicated as a potential causal factor for these effects. The effects of prior EEDC exposure on immune response were examined in juvenile largemouth bass (Micropterus salmoides) exposedAuthorsJessica Kristin Leet, Justin Greer, Catherine A. Richter, Luke R. Iwanowicz, Edward Spinard, Jacquelyn McDonald, Carla M. Conway, Robert W. Gale, Donald E. Tillitt, John HansenEvaluation of Francisella orientalis ΔpdpA as a live attenuated vaccine against piscine Francisellosis in Nile tilapia
Francisella orientalis is an important bacterial pathogen of marine and freshwater fish with worldwide distribution. Fish francisellosis is a severe subacute to chronic granulomatous disease, with high mortalities and high infectivity rates in cultured and wild fish. To date, there is no approved vaccine for this disease. In this study, we evaluated the efficacy of a defined F. orientalis pathogenAuthorsFernanda de Alexandre Sebastião, John Hansen, Esteban SotoFrom IgZ to IgT: A call for a common nomenclature for immunoglobulin heavy chain genes of ray-finned fish
No abstract available.AuthorsAlex Dornburg, Tatsuya Ota, Michael F. Criscitiello, Irene Salinas, J. Oriol Sunyer, Susana Magadán, Pierre Boudinot, Zhen Xu, Martin F Flajnik, Amy Singer, Francisco Gambón-Deza, John Hansen, Jeffrey A YoderDisruption of the Francisella noatunensis orientalis pdpA gene results in virulence attenuation and protection in zebrafish
Several Francisella spp. including F. noatunensis are regarded as important emerging pathogens of wild and farmed fish. However, very few studies have investigated the virulence factors that allow these bacterial species to be pathogenic in fish. The Francisella Pathogenicity Island (FPI) is a well-described, gene-dense region encoding major virulence factors for the genus Francisella. PdpA is a mAuthorsJohn Hansen, Karina Ray, Po-Jui Chen, Susan Yun, Diane G. Elliott, Carla M. Conway, Michael Culcutt, Maureen K. Purcell, Timothy J Welch, John Patrick Bellah, Ellie Maureen Dalsky, Justin Blaine Greer, Esteban SotoNeither microcystin, nor nodularin, nor cylindrospermopsin directly interact with human toll-like receptors
Various stressors including temperature, environmental chemicals, and toxins can have profound impacts on immunity to pathogens. Increased eutrophication near rivers and lakes coupled with climate change are predicted to lead to increased algal blooms. Currently, the effects of cyanobacterial toxins on disease resistance in mammals is a largely unexplored area of research. Recent studies have suggAuthorsJohn Hansen, Keith Loftin, Zachary Laughrey, Ondrei AdamovskyGenomic architecture and repertoire of the rainbow trout immunoglobulin light chain genes
The genomic loci encoding the four immunoglobulin light chains (IgL1, IgL2, IgL3, and IgL4) in the Swanson trout genome assembly were annotated in order to provide a measurement of the potential IgL repertoire. IgL1 and IgL3 gene segments are co-localized on chromosomes 21, 18, 15, and 7 while IgL2 and IgL4 were found on chromosomes 13 and 17, respectively. In total, 48 constant (CL), 87 variableAuthorsKatherine Rego, John Hansen, Erin S BromageEffect of growth rate on transcriptomic responses to immune stimulation in wild-type, domesticated, and GH-transgenic coho salmon
Background Transcriptomic responses to immune stimulation were investigated in coho salmon (Oncorhynchus kisutch) with distinct growth phenotypes. Wild-type fish were contrasted to strains with accelerated growth arising either from selective breeding (i.e. domestication) or genetic modification. Such distinct routes to accelerated growth may have unique implications for relationships and/or tradeAuthorsJin-Hyoung Kim, Daniel J Macqueen, James Winton, John D. Hansen, Hyun Park, Robert H DevlinCharacterization of immunoglobulin light chain utilization and variable family diversity in rainbow trout
This study characterizes immunoglobulin light chain (IgL) expression and variable family usage in rainbow trout. IgL transcripts were generated by 5’ RACE from both immune and TNP-KLH immunized fish. Phylogenetic analysis revealed that the IgL variable regions clustered into seven different families: three kappa families (two newly described in this study), three sigma families, and a single lambdAuthorsKatherine Rego, Eva Bengtén, Melanie Wilson, John D. Hansen, Erin S BromageGeneration of lamprey monoclonal antibodies (Lampribodies) using the phage display system
The variable lymphocyte receptors (VLRs) consist of leucine rich repeats (LRRs) and comprise the humoral antibodies produced by lampreys and hagfishes. The diversity of the molecules is generated by stepwise genomic rearrangements of LRR cassettes dispersed throughout the VLRB locus. Previously, target-specific monovalent VLRB antibodies were isolated from sea lamprey larvae after immunization witAuthorsKhan M A Hassan, John Hansen, Brantley R Herrin, Chris T AmemiyaStandardized IMGT nomenclature of salmonidae IGH genes, the paradigm of Atlantic salmon and rainbow trout: From genomics to repertoires
In teleost fish as in mammals, humoral adaptive immunity is based on B lymphocytes expressing highly diverse immunoglobulins (IG). During B cell differentiation, IG loci are subjected to genomic rearrangements of V, D, and J genes, producing a unique antigen receptor expressed on the surface of each lymphocyte. During the course of an immune response to infections or immunizations, B cell clones sAuthorsSusana Magadan, Aleksei Krasnov, Saida Hadi-Saljoki, Sergey Afanasyev, Stanislas Mondot, Rosario Castro, Irene Salinas, Oriol Sunyer, John Hansen, Ben F Koop, Marie-Paule Lefranc, Pierre BoudinotPreface to the special issue “Impact of omics on comparative immunology”
No abstract available.AuthorsPierre Boudinot, Unni Grimholt, John D. Hansen - News