Margaret Hunter is a Research Geneticist at the USGS Wetland and Aquatic Research Center.
Margaret Hunter attended the University of Florida where she received a B.Sc. in Microbiology and Cellular Sciences and minored in Chemistry and Plant Molecular and Cellular Biology. Following her bachelor degree, she received a PhD in Veterinary Medical Sciences researching Sirenia (manatee and dugong) cytogenetics and conservation genetics. Affiliations: USGS Sirenia Project USGS Genetics and Genomics Research Courtesy Assistant Professor, University of Florida, College of Veterinary Medicine, Department of Large Animal Clinical Sciences Affiliated faculty member, University of Florida Aquatic Animal Health Program Affiliated faculty member, University of Florida Genetics Institute.
Science and Products
Filter Total Items: 19
A Rapid CRISPR-based Field Test for the Non-invasive Detection of the Fungal Causative Agent of White-nose Syndrome
White-nose syndrome has killed more than five million bats since its discovery in 2006. USGS is developing a non-invasive and user-friendly CRISPR white-nose syndrome biosensor to allow for quick detection of the pathogen that causes the disease.
Python Vital Rates
Researchers from USGS-FORT and WARC and University of Florida are collaborating on a long-term Burmese python research program in southern Florida to address management needs of partners and stakeholders throughout the Greater Everglades.
Standardizing, aggregating, analyzing and disseminating global wildlife genetic and genomic data for improved management and advancement of community best practices
Global biodiversity is rapidly declining, threatening humans, ecosystems, and the services that society relies upon. Monitoring and understanding the extent of biodiversity declines can support policy decisions. Genetic diversity is the foundation of biodiversity, determining the capacity of populations to adapt to environmental changes and to sustain function and structure in all ecosystems. Whil
READI-Net: Transitioning eDNA aquatic invasive species surveillance from research to actionable science
USGS researchers are working with the Monterey Bay Aquarium Research Institute to optimize autonomous, robotic samplers for detection of DNA fragments shed by biological threats (BT; invasive species, parasites, pathogens) in our nation’s waters. Finding DNA fragments (a method known as environmental DNA sampling) produced by an emerging BT in water is akin to finding a needle in a haystack—many...
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Ecosystems Mission Area, Biological Threats and Invasive Species Research Program, Columbia Environmental Research Center, Eastern Ecological Science Center, Forest and Rangeland Ecosystem Science Center, New York Water Science Center, Northern Rocky Mountain Science Center, Upper Midwest Environmental Sciences Center, Wetland and Aquatic Research Center , Wyoming-Montana Water Science Center, Pacific Northwest Environmental DNA Laboratory
Chronic Wasting Disease (CWD) Detection in Cervids Using MicroRNA Biomarkers from Blood
WARC scientists are testing and developing methods for the isolation of cervid exosomes from blood samples, followed by microRNA extraction and next generation sequencing.
Implementing FAIR practices: Storing and displaying eDNA data in the USGS Nonindigenous Aquatic Species database
We are working to incorporate environmental DNA (eDNA) data into the Nonindigenous Aquatic Species (NAS) database, which houses over 570,000 records of nonindigenous species nationally, and already is used by a broad user-base of managers and researchers regularly for invasive species monitoring. eDNA studies have allowed for the identification and biosurveillance of numerous invasive and threaten
Establishing standards and integrating environmental DNA (eDNA) data into the USGS Nonindigenous Aquatic Species database
Environmental DNA (eDNA) testing allows for high sensitivity monitoring efforts of cryptic species in large, remote systems and is performed by investigating water and soil samples for sloughed DNA. Having access to eDNA datasets across multiple taxa and ecosystems is necessary for improved coordination among researchers and management. Additionally, quality control protocols are needed to vet inc
Health Effects and Behavioral Response of Florida Manatees (Trichechus manatus latirostris) to Persistent Algal Bloom and Associated Loss of Seagrass Resources in Brevard County, Florida
USGS researchers are working with partners to assess the health and foraging behavior of Florida manatees in the northern Indian River Lagoon and Banana River, areas that have experienced declining seagrasses due to an extended phytoplankton bloom.
West Indian Manatee Population Genetics
Nuclear microsatellite markers have been developed and implemented on ~2,000 West Indian manatees. These markers provide individual genetic fingerprints for mark-recapture studies, population structure information for the conservation of unique or isolated populations, and pedigree and relatedness information for addressing inbreeding and breeding structure patterns.
Manatee Health Assessment and Biomedical Studies
A multi-agency effort assesses the health of manatees and provides baseline information on their health, reproductive status, and nutritional condition.
Statistical Models for the Design and Analysis of Environmental DNA (eDNA) Surveys of Invasive and Imperiled Species
Detecting invasive species at low densities or prior to population establishment is critical for successful control and eradication. For example, Burmese pythons occupy thousands of square kilometers of mostly inaccessible habitats.
Trojan Y Invasive Species Control - Sex Marker Identification
To control or possibly eliminate non-native species without harm to native fauna, a genetic technique using sex-reversed females with two Y chromosomes (Trojan Y) is being developed to reduce the breeding success of the species, ultimately resulting in population decline or loss.
Science and Products
- Science
Filter Total Items: 19
A Rapid CRISPR-based Field Test for the Non-invasive Detection of the Fungal Causative Agent of White-nose Syndrome
White-nose syndrome has killed more than five million bats since its discovery in 2006. USGS is developing a non-invasive and user-friendly CRISPR white-nose syndrome biosensor to allow for quick detection of the pathogen that causes the disease.Python Vital Rates
Researchers from USGS-FORT and WARC and University of Florida are collaborating on a long-term Burmese python research program in southern Florida to address management needs of partners and stakeholders throughout the Greater Everglades.Standardizing, aggregating, analyzing and disseminating global wildlife genetic and genomic data for improved management and advancement of community best practices
Global biodiversity is rapidly declining, threatening humans, ecosystems, and the services that society relies upon. Monitoring and understanding the extent of biodiversity declines can support policy decisions. Genetic diversity is the foundation of biodiversity, determining the capacity of populations to adapt to environmental changes and to sustain function and structure in all ecosystems. WhilREADI-Net: Transitioning eDNA aquatic invasive species surveillance from research to actionable science
USGS researchers are working with the Monterey Bay Aquarium Research Institute to optimize autonomous, robotic samplers for detection of DNA fragments shed by biological threats (BT; invasive species, parasites, pathogens) in our nation’s waters. Finding DNA fragments (a method known as environmental DNA sampling) produced by an emerging BT in water is akin to finding a needle in a haystack—many...ByEcosystems Mission Area, Biological Threats and Invasive Species Research Program, Columbia Environmental Research Center, Eastern Ecological Science Center, Forest and Rangeland Ecosystem Science Center, New York Water Science Center, Northern Rocky Mountain Science Center, Upper Midwest Environmental Sciences Center, Wetland and Aquatic Research Center , Wyoming-Montana Water Science Center, Pacific Northwest Environmental DNA LaboratoryChronic Wasting Disease (CWD) Detection in Cervids Using MicroRNA Biomarkers from Blood
WARC scientists are testing and developing methods for the isolation of cervid exosomes from blood samples, followed by microRNA extraction and next generation sequencing.Implementing FAIR practices: Storing and displaying eDNA data in the USGS Nonindigenous Aquatic Species database
We are working to incorporate environmental DNA (eDNA) data into the Nonindigenous Aquatic Species (NAS) database, which houses over 570,000 records of nonindigenous species nationally, and already is used by a broad user-base of managers and researchers regularly for invasive species monitoring. eDNA studies have allowed for the identification and biosurveillance of numerous invasive and threatenEstablishing standards and integrating environmental DNA (eDNA) data into the USGS Nonindigenous Aquatic Species database
Environmental DNA (eDNA) testing allows for high sensitivity monitoring efforts of cryptic species in large, remote systems and is performed by investigating water and soil samples for sloughed DNA. Having access to eDNA datasets across multiple taxa and ecosystems is necessary for improved coordination among researchers and management. Additionally, quality control protocols are needed to vet incHealth Effects and Behavioral Response of Florida Manatees (Trichechus manatus latirostris) to Persistent Algal Bloom and Associated Loss of Seagrass Resources in Brevard County, Florida
USGS researchers are working with partners to assess the health and foraging behavior of Florida manatees in the northern Indian River Lagoon and Banana River, areas that have experienced declining seagrasses due to an extended phytoplankton bloom.West Indian Manatee Population Genetics
Nuclear microsatellite markers have been developed and implemented on ~2,000 West Indian manatees. These markers provide individual genetic fingerprints for mark-recapture studies, population structure information for the conservation of unique or isolated populations, and pedigree and relatedness information for addressing inbreeding and breeding structure patterns.Manatee Health Assessment and Biomedical Studies
A multi-agency effort assesses the health of manatees and provides baseline information on their health, reproductive status, and nutritional condition.Statistical Models for the Design and Analysis of Environmental DNA (eDNA) Surveys of Invasive and Imperiled Species
Detecting invasive species at low densities or prior to population establishment is critical for successful control and eradication. For example, Burmese pythons occupy thousands of square kilometers of mostly inaccessible habitats.Trojan Y Invasive Species Control - Sex Marker Identification
To control or possibly eliminate non-native species without harm to native fauna, a genetic technique using sex-reversed females with two Y chromosomes (Trojan Y) is being developed to reduce the breeding success of the species, ultimately resulting in population decline or loss. - Data
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