Genetics/Bioinformatices

The SAGE Wildlife Research Group consists of a large team of research scientists with an interest in conservation and management of wildlife and their ecosystems. Broadly, research involves understanding animal-habitat relationships, with an emphasis on conservation ecology and population demography, and a focus on shrubland, alpine, and grassland ecosystems. We are addressing the effects of...

The Molecular Ecology Laboratory applies innovative genetic and genomic technologies to address a variety of complex questions and issues facing the Nation's natural resources. While we continually update the scale and efficiency of laboratory procedures to meet stakeholder needs, we must also be innovative and flexible in addressing those needs that have no off-the-shelf solution. We help...

Once numbering in the tens of millions, plains bison ( Bison bison bison) were nearly driven to extinction with only a few hundred individuals remaining by the late 19th century. Plains bison have since recovered to approximately 20,000 animals managed in conservation herds throughout North America, yet substantial challenges to their recovery remain. The Department of the Interior (DOI) stewards...

FORT researchers provide sound science to support the Department of Interior in its efforts to preserve American heritage, streamline species listing decisions and promote species recovery, manage wild horses and burros using efficient, cost-effective tools, and sustain hunting and fishing on public lands. This research is developed in partnership with resource managers from local, State, Federal...

New terrestrial environmental DNA (eDNA) sampling techniques are sensitive tools for early detection of the highly invasive brown treesnakes (BTS). In a new collaborative research effort involving four USGS science centers, scientists have initiated the development of an innovative point-of-use (POU) assay for BTS. POU assays are tests that can be run in the field with minimal equipment and no...

Climate change will expose many species to novel extreme environmental conditions, that may test organisms’ ability to respond to environmental change. Local adaptation, when a species evolves to be more suited for its local environment, can be an indicator of whether a species is likely to persist in the rapidly changing environment. Habitat specialists, like the greater sage-grouse, have evolved...

Widespread anthropogenic development in the sagebrush steppe and shifting drought and wildfire patterns have contributed to the observed dramatic declines of the greater sage-grouse since the 1960s. Alteration of the sagebrush habitat can affect many aspects of the species life history, including survival and local resource use. Over many years, the combined effects of landscape composition on...

The greater sage-grouse is a sagebrush-obligate species that has experienced dramatic range-wide declines since the 1960s, causing significant conservation concern. Genetic information has refined our understanding of population structure, the levels of inbreeding or relatedness, allowed the ability to monitor for change over time, and has been used to understand the outcome of management actions...

Sage-grouse, iconic birds of the American West, have experienced dramatic reductions and fragmentation of habitat, resulting in significant conservation concern. Genetic information can help inform priorities for protection and habitat restoration as well as strategies for translocations, but may be difficult for resource managers to find, interpret, and use in their decision making. In this work...

USGS scientists are identifying local adaptation in sage-grouse by modeling allelic variation at large numbers of single-nucleotide polymorphisms (SNPs) in relation to environmental and climate variables.

Using the existing rangewide genetic and demographic data, scientists from the USGS, USDA Forest Service, and University of Waterloo will assess the relative contributions of habitat and genetic connectivity to lek size and stability.

Molecular tagging is a new application of molecular genetic techniques to traditional mark-recapture methodology designed to address situations where traditional methods fail. In such studies, non-invasively collected samples (such as feces, feathers, or fur) are used as a source of DNA that is then genotyped at multiple loci such that each individual animal can be uniquely identified. Thus, each...