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Publications

Browse more than 150,000 publications authored by our scientists over the past 100+ year history of the USGS.  Publications available are: USGS-authored journal articles, series reports, book chapters, other government publications, and more.

Upper Midwest Environmental Sciences Center Publications

Filter Total Items: 3232

Targeted metabolomics characterizes metabolite occurrence and variability in stable freshwater mussel populations

Freshwater mussels (order Unionida) play a key role in freshwater systems as ecosystem engineers and indicators of aquatic ecosystem health. The fauna is globally imperilled due to a diversity of suspected factors; however, causes for many population declines and mortality events remain unconfirmed due partly to limited health assessment tools. Mussel-monitoring activities often rely on population
Authors
Diane L. Waller, Joel Putnam, J. Nolan Steiner, Brant Fisher, Grant N. Burcham, John W. Oliver, Stephen B. Smith, Richard A. Erickson, Anne Remek, Nancy Bodeker

The relative importance of cisco (Coregonus artedi) in the diets of common loons (Gavia immer) among a set of cisco refuge lakes in Minnesota

Common loon (Gavia immer (Brünnich, 1764)) foraging patterns and the relative importance of cisco (Coregonus artedi Lesueur, 1818) in the diets of loons were evaluated for the Whitefish Chain of Lakes, a set of coldwater cisco refuge lakes in Minnesota, USA. Environmental DNA metabarcoding of loon fecal samples detected 15 fish species. Yellow perch (Perca flavescens (Mitchill, 1814)), mimic shine
Authors
Kevin P. Kenow, Yer Lor, Beth V. Holbrook, Luke J. Fara, Steven C. Houdek, Tariq Tajjioui, Brian R. Gray, Peter C. Jacobson

MetaIPM: Placing integral projection models into a metapopulation framework

Metapopulation models include spatial population dynamics such as dispersion and migration between subpopulations. Integral projection models (IPMs) can include demographic rates as a function of size. Traditionally, metapopulation models do not included detailed populaiton models such as IPMs. In some situations, both local population dynamics (e.g. size-based survival) and spatial dynamics are i
Authors
Richard A. Erickson, James P Peirce, Greg J. Sandland, Hannah Mann Thompson, Alison A. Coulter, David C. Glover

Quantifying ecosystem states and state transitions of the Upper Mississippi River System using topological data analysis

Aquatic systems worldwide can exist in multiple ecosystem states (i.e., a recurring collection of biological and chemical attributes), and effectively characterizing multidimensionality will aid protection of desirable states and guide rehabilitation. The Upper Mississippi River System is composed of a large floodplain river system spanning 2200 km and multiple federal, state, tribal and local gov
Authors
Danelle M. Larson, Wako Bungula, Casey McKean, Alaina Stockdill, Amber Lee, Frederick Miller, Killian Davis

Evaluating pharmaceuticals and other organic contaminants in the Lac du Flambeau Chain of Lakes using risk-based screening techniques

In an investigation of pharmaceutical contamination in the Lac du Flambeau Chain of Lakes (hereafter referred to as “the Chain”), few contaminants were detected; only eight pharmaceuticals and one pesticide were identified among the 110 pharmaceuticals and other organic contaminants monitored in surface water samples. This study, conducted in cooperation with the Lac du Flambeau Tribe’s Water Reso
Authors
Matthew A. Pronschinske, Steven R. Corsi, Celeste Hockings

Groundwater residence times in glacial aquifers—A new general simulation-model approach compared to conventional inset models

Groundwater is important as a drinking-water source and for maintaining base flow in rivers, streams, and lakes. Groundwater quality can be predicted, in part, by its residence time in the subsurface, but the residence-time distribution cannot be measured directly and must be inferred from models. This report compares residence-time distributions from four areas where groundwater flow and travel t
Authors
J. Jeffrey Starn, Leon J. Kauffman, Daniel T. Feinstein

Reconstructing missing data by comparing interpolation techniques: Applications for long-term water quality data

Missing data are typical yet must be addressed for proper inferences or expanding datasets to guide our limnological understanding and management of aquatic systems. Interpolation methods (i.e., estimating missing values using known values within the dataset) can alleviate data gaps and common problems. We compared seven popular interpolation methods for predicting substantial missingness in a lon
Authors
Danelle M. Larson, Wako Bungula, Amber Lee, Alaina Stockdill, Casey McKean, Frederick Miller, Killian Davis, Richard A. Erickson, Enrika Hlavacek

When are environmental DNA early detections of invasive species actionable?

Environmental DNA (eDNA) sampling provides sensitive early detection capabilities for recently introduced taxa. However, natural resource managers struggle with how to integrate eDNA results into an early detection rapid response program because positive eDNA detections are not always indicative of an eventual infestation. We used a structured decision making (SDM) framework to evaluate appropriat
Authors
Adam Sepulveda, Christine E. Dumoulin, Denise L. Blanchette, John Mcphedran, Colin Holme, Nathan Whalen, Margaret Hunter, Christopher M. Merkes, Catherine A. Richter, Matthew Neilson, Wesley M. Daniel, Devin Nicole Jones, David R. Smith

Per- and polyfluorinated alkyl substances (PFAS) in Pennsylvania surface waters: A statewide assessment, associated sources, and land-use relations

The objectives of this study are to identify per- and polyfluoroalkyl substances (PFAS) in Pennsylvania surface waters, corresponding associations with potential sources of PFAS contamination (PSOC) and other parameters, and compare raw surface water concentrations to human and ecological benchmarks. Surface water samples from 161 streams were collected in September 2019 and were analyzed for 33 t
Authors
Sara E. Breitmeyer, Amy Williams, Joseph W. Duris, Lee W. Eicholtz, Dustin R. Shull, Timothy A. Wertz, Emily Woodward

Application of electricity and underwater acoustics to clear fish from a navigation lock during maintenance

The presence of fish within navigation locks can introduce an environmental challenge for construction crews when maintenance is required. This study examined the effectiveness of a dual-deterrent fish herding technique using electricity and acoustic stimuli to reduce the abundance of fish within a navigation lock before a scheduled dewatering for maintenance. Fixed-location multi-beam imaging so
Authors
Jose Rivera, Aaron R. Cupp, Josey Lee Ridgway, Duane Chapman, Bethany E Hoster, Matthew Ross Acre, Robin D. Calfee, Jesse Robert Fischer, James J. Duncker

A bacteriological comparison of the hemolymph from healthy and moribund unionid mussel populations in the upper Midwestern U.S.A. prompts the development of diagnostic assays to detect Yokenella regensburgei

Recent bacteriological investigations of freshwater mussel mortality events in the southeastern United States have identified a variety of bacteria and differences in bacterial communities between sick and healthy mussels. In particular, Yokenella regensburgei and Aeromonas spp. have been shown to be associated with moribund mussels, although it remains unclear whether these bacteria are causes or
Authors
Eric Leis, Sara Dziki, Isaac Standish, Diane L. Waller, Jordan Richard, Jesse Weinzinger, Cleyo Harris, Susan Knowles, Tony Goldberg

Review and development of best practices for toxicity tests with dreissenid mussels

Since their introduction to North America in the 1980s, research to develop effective control tools for invasive mussels (Dreissena polymorpha and D. rostriformis bugensis) has been ongoing across various research institutions using a range of testing methods. Inconsistencies in experimental methods and reporting present challenges for comparing data, repeating experiments, and applying results. T
Authors
Diane L. Waller, Sherri Pucherelli, Matthew Barbour, Samantha Tank, Matthew J Meulemans, Jeremy K. Wise, Angelique Dahlberg, David C. Aldridge, Renata Claudi, W. Gregory Cope, Patricia L. Gillis, Donna Kashian, Denise A. Mayer, Kelly A. Stockton-Fiti, Wai Hing Wong
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