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Publications

This list of publications includes peer-review journal articles, official USGS publications series, reports and more authored by scientists in the Ecosystems Mission Area. A database of all USGS publications, with advanced search features, can be accessed at the USGS Publications Warehouse.  

Filter Total Items: 42719

Water velocity regulates macro-consumer herbivory on the benthic macrophyte Podostemum ceratophyllum Michx. Water velocity regulates macro-consumer herbivory on the benthic macrophyte Podostemum ceratophyllum Michx.

1) Macrophytes influence aquatic ecosystems by increasing habitat complexity and providing trophic resources for aquatic fauna. While herbivory on freshwater macrophytes is widely documented in lakes, low-velocity riverine habitats, the influence of herbivory on macrophytes in higher-velocity habitats has rarely been examined. 2) We investigated the hypothesis that high water velocity...
Authors
James L Wood, Jon W Skaggs, Caitlin C Conn, Mary Freeman

The nucleoprotein and phosphoprotein are major determinants of the virulence of viral hemorrhagic septicemia virus in rainbow trout The nucleoprotein and phosphoprotein are major determinants of the virulence of viral hemorrhagic septicemia virus in rainbow trout

Viral hemorrhagic septicemia virus (VHSV), a fish rhabdovirus, infects several marine and freshwater fish species. There are many strains of VHSV that affect different fish, but some strains of one genetic subgroup have gained high virulence in rainbow trout (Oncorhynchus mykiss). To define the genetic basis of high virulence in trout, we used reverse genetics to create chimeric VHSVs in...
Authors
Vikram N Vakharia, Jie Liu, Douglas Mckenney, Gael Kurath

Non-native marine fishes in Florida: Updated checklist, population status and early detection/rapid response Non-native marine fishes in Florida: Updated checklist, population status and early detection/rapid response

It has been ten years since the last comprehensive assessment of non-native marine fishes in Florida. Herein, we report sightings of 41 species from Florida coastal waters since the earliest reported sighting in 1984. Information is provided on the population status of each species (e.g., established, eradicated, unknown), and our early detection/rapid response program to remove these...
Authors
Pamela J. Schofield, Lad Akins

Juvenile Chinook salmon (Oncorhynchus tshawytscha) survival in Lookout Point Reservoir, Oregon, 2018 Juvenile Chinook salmon (Oncorhynchus tshawytscha) survival in Lookout Point Reservoir, Oregon, 2018

A field study was conducted to estimate survival of juvenile Chinook salmon (Oncorhynchus tshawytscha) in Lookout Point Reservoir, Oregon, during 2018. The study consisted of releasing three groups of genetically-marked fish into the reservoir, and sampling them monthly. Juveniles were released during April 10–13 (116,708 fish), May 15–18 (31,911 fish), and June 19–20 (11,758 fish)...
Authors
Tobias J. Kock, Russell W. Perry, Gabriel S. Hansen, Philip V. Haner, Adam C. Pope, John M. Plumb, Karen M. Cogliati, Amy C. Hansen

Plants trap pollen to feed predatory arthropods as an indirect resistance against herbivory Plants trap pollen to feed predatory arthropods as an indirect resistance against herbivory

Plants commonly employ indirect resistance to reduce herbivory by provisioning predatory arthropod populations with additional resources. Numerous predatory arthropods consume pollen that is entrapped on dense, wooly trichomes of plants. Over two seasons, we supplemented pollen on the wooly leaves of turkey mullein, Croton setiger, in natural populations to determine if pollen entrapped...
Authors
Jenny Van Wyk, Billy Krimmel, Laure Crova, Ian S. Pearse

A physically based method of combining ADCP velocity data with point samples to compute suspended-sand discharge -- Application to the Rhone River, France A physically based method of combining ADCP velocity data with point samples to compute suspended-sand discharge -- Application to the Rhone River, France

Measuring suspended-sand flux in rivers is a challenge since sand concentrations are highly variable in time and space throughout a river cross section. Most of the present methodologies rely on point or depth-integrated sampling (Nolan et al., 2005, Topping et al., 2016). The standard method estimates mean concentration and multiply it by discharge to compute the suspended-sand...
Authors
Guillaume Dramais, Benoit Camenen, Jerome Le Coz, David J. Topping, Christophe Peteuil, Gilles Pierrefeu

Species-specific responses to wetland mitigation among amphibians in the Greater Yellowstone Ecosystem Species-specific responses to wetland mitigation among amphibians in the Greater Yellowstone Ecosystem

Habitat loss and degradation are leading causes of biodiversity declines, therefore assessing the capacity of created mitigation wetlands to replace habitat for wildlife has become a management priority. We used single season occupancy models to compare the occurrence of larvae of four species of pond‐breeding amphibians in wetlands created for mitigation, wetlands impacted by road...
Authors
LK Swartz, WH Lowe, Erin L. Muths, Blake R. Hossack

Acoustic tag retention rate varies between juvenile green and hawksbill sea turtles Acoustic tag retention rate varies between juvenile green and hawksbill sea turtles

Background Biotelemetry has become a key tool for studying marine animals in the last decade, and a wide range of electronic tags are now available for answering a range of research questions. However, comparatively, less attention has been given to attachment methods for these tags and the implications of tag retention on study design, especially when designing a comparative study...
Authors
Thomas Selby, Brian Smith, Michael Cherkiss, Andrew Crowder, Zandy Hillis-Starr, Clayton Pollock, Kristen Hart

Balancing sampling intensity against spatial coverage for a community science monitoring programme Balancing sampling intensity against spatial coverage for a community science monitoring programme

Community science is an increasingly integral part of biodiversity research and monitoring, often achieving broad spatial and temporal coverage but lower sampling intensity than studies conducted by professional scientists. When designing a community‐science monitoring programme, careful assessment of sampling designs that could be both feasible and successful at meeting programme goals...
Authors
Emily L. Weiser, Jay E. Diffendorfer, Ralph Grundel, Laura Lopez Hoffman, Samuel Pecoraro, Darius J. Semmens, Wayne E. Thogmartin

The state of the world’s mangrove forests: Past, present, and future The state of the world’s mangrove forests: Past, present, and future

Intertidal mangrove forests are a dynamic ecosystem experiencing rapid changes in extent and habitat quality over geological history, today and into the future. Climate and sea level have drastically altered mangrove distribution since their appearance in the geological record ∼75 million years ago (Mya), through to the Holocene. In contrast, contemporary mangrove dynamics are driven...
Authors
Daniel A. Friess, Kerrylee Rogers, Catherine E. Lovelock, Ken Krauss, Stuart E. Hamilton, Shing Yip Lee, Richard Lucas, Jurgenne Primavera, Anusha Rajkaran, Suhua Shi

An evaluation of sedatives for use in transport of juvenile endangered fishes in plastic bags An evaluation of sedatives for use in transport of juvenile endangered fishes in plastic bags

Trucks and aircraft typically transport rare or endangered fishes in large unsealed tanks containing large volumes of water (typically hundreds of liters) during conservation efforts. Ornamental fishes, however, are commonly sent by mail in small sealed plastic bags filled with oxygen, minimal water, and a small amount of sedative to reduce weight and overall shipping costs. Our goal was...
Authors
Laura A. Tennant, Ben M. Vaage, David L. Ward

Thermal variability drives synchronicity of an aquatic insect resource pulse Thermal variability drives synchronicity of an aquatic insect resource pulse

Spatial heterogeneity in environmental conditions can prolong food availability by desynchronizing the timing of ephemeral, high‐magnitude resource pulses. Spatial patterns of water temperature are highly variable among rivers as determined by both natural and anthropogenic features, but the influence of this variability on freshwater resource pulse phenology is poorly documented. We...
Authors
Heidi E. Anderson, Lindsey K. Alberson, David Walters
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