Publications
This list of publications includes peer-review journal articles, official USGS publications series, reports and more authored by scientists in the Ecosystems Mission Area. A database of all USGS publications, with advanced search features, can be accessed at the USGS Publications Warehouse.
Filter Total Items: 42884
Detecting snow depth change in avalanche path starting zones using uninhabited aerial systems and structure from motion photogrammetry Detecting snow depth change in avalanche path starting zones using uninhabited aerial systems and structure from motion photogrammetry
Understanding snow depth distribution and change is useful for avalanche forecasting and mitigation, runoff forecasting, and infrastructure planning. Advances in remote sensing are improving the ability to collect snow depth measurements. The development of structure from motion (SfM), a photogrammetry technique, combined with the use of uninhabited aerial systems (UASs) allows for high...
Authors
Erich H. Peitzsch, Daniel B. Fagre, Jordy Hendrikx, Karl W. Birkeland
Integrative taxonomy resolves taxonomic uncertainty for freshwater mussels being considered for protection under the U.S. Endangered Species Act Integrative taxonomy resolves taxonomic uncertainty for freshwater mussels being considered for protection under the U.S. Endangered Species Act
Objectively delimiting species boundaries remains an important challenge in systematics and becomes urgent when unresolved taxonomy complicates conservation and recovery efforts. We examined species boundaries in the imperiled freshwater mussel genus Cyclonaias(Bivalvia: Unionidae) using morphometrics, molecular phylogenetics, and multispecies coalescent models to help guide pending...
Authors
Nathan A. Johnson, Chase H. Smith, John M. Pfeiffer, Chalres R. Randklev, James D. Williams, James D. Austin
Emigration and transportation stress of juvenile Chinook salmon relative to their reintroduction upriver of Shasta Dam, California, 2017–18 Emigration and transportation stress of juvenile Chinook salmon relative to their reintroduction upriver of Shasta Dam, California, 2017–18
The Bureau of Reclamation supports the Shasta Dam Fish Passage Evaluation (SDFPE; Yip, 2015) program, and in 2016 set out to determine the feasibility of reintroducing winter-run and spring-run Chinook salmon (Oncorhynchus tshawytscha) and steelhead (O. mykiss) to tributaries upstream of Shasta Dam. Ideally, reintroduction strategy includes trapping naturally produced downstream...
Authors
Noah S. Adams, Theresa L. Liedtke, John M. Plumb, Lisa K. Weiland, Amy C. Hansen, Scott D. Evans
Distribution, habitat, and population size of Island Night Lizards on San Nicolas Island, California Distribution, habitat, and population size of Island Night Lizards on San Nicolas Island, California
The Island Night Lizard (Xantusia riversiana) was removed from the federal list of threatened species in May 2014. This strongly differentiated species is endemic to 3 of the southern California Channel Islands—San Clemente, San Nicolas, and Santa Barbara. Suitable habitat for Island Night Lizards is extensive on San Clemente Island, and the species is abundant there. Habitat is limited...
Authors
Charles A. Drost, Gary M. Fellers, Thomas R. Murphey, Patrick M. Kleeman, Brian J. Halstead, Ryan P. O'Donnell
Comparison of estimators for monitoring long-term population trends in deer mice, Peromyscus maniculatus, on the California Channel Islands Comparison of estimators for monitoring long-term population trends in deer mice, Peromyscus maniculatus, on the California Channel Islands
Capture-recapture methods are commonly used to estimate abundance and density of wild animal populations. Although a variety of sophisticated analytical techniques are available to evaluate capture-recapture data, vertebrate monitoring programs often lack the resources (e.g., time, personnel, and/or analytical expertise) to apply these methods. As an alternative, simple population...
Authors
Catherin A. Schwemm, Charles A. Drost, John L. Orrock, Timothy J. Coonan, Thomas R. Stanley
Sediment infilling benefits rainbow trout passage in a baffled channel Sediment infilling benefits rainbow trout passage in a baffled channel
Fish are thought to exploit low velocity recirculation zones in the wakes of baffles to take refuge from challenging hydraulic conditions in baffled culverts. Here, we investigate how sediment deposition in the wakes of baffles affects passage and behaviors of juvenile rainbow trout in a baffled experimental flume. High temporal resolution 3D fish tracking provided detailed kinematics of...
Authors
Jason Duguay, Brendan Foster, R.W. Jay Lacey, Theodore R. Castro-Santos
Endangered species recovery: A resource allocation problem Endangered species recovery: A resource allocation problem
Many nations have laws to identify and protect imperiled species and their ecosystems. In the United States, actions taken under the Endangered Species Act (ESA) have prevented many extinctions, but few listed species have recovered to the point where they can have the ESA protections removed (1, 2). One reason for this [among many (3)] is a shortfall in funding, raising a conundrum for...
Authors
Leah R. Gerber, Michael C. Runge, Richard F. Maloney, Gwenllian D. Iacona, C. Ashton Drew, Stephanie Avery-Gomm, James Brazill-Boast, Deborah T. Crouse, Rebecca S. Epanchin-Niell, Sarah B. Hall, Lynn A. Maguire, Tim Male, Don Morgan, Jeff Newman, Hugh P. Possingham, Libby Rumpff, Katherine C. B. Weiss, Robyn S. Wilson, Marilet A. Zablan
Changing station coverage impacts temperature trends in the Upper Colorado River Basin Changing station coverage impacts temperature trends in the Upper Colorado River Basin
Over the Upper Colorado River Basin (UCRB), temperatures in widely used gridded data products do not warm as much as mean temperatures from a stable set of U.S. Historical Climatology Network (USHCN) stations, located at generally lower elevations, in most months of the year. This is contrary to expectations of elevation-dependent warming, which suggests that warming increases with...
Authors
Stephanie A. McAfee, Gregory J. McCabe, Stephen T. Gray, Gregory T. Pederson
Drought and fire in the western USA: Is climate attribution enough? Drought and fire in the western USA: Is climate attribution enough?
Purpose of Review I sought to review the contributions of recent literature and prior foundational papers to our understanding of drought and fire. In this review, I summarize recent literature on drought and fire in the western USA and discuss research directions that may increase the utility of that body of work for twenty-first century application. I then describe gaps in the...
Authors
Jeremy S. Littell
Population differences in susceptibility to Plasmodium relictum in zebra finches Taeniopygia guttata Population differences in susceptibility to Plasmodium relictum in zebra finches Taeniopygia guttata
Domesticated Australian and Timor zebra finches (Taeniopygia guttata castanotis, and T. guttata guttata, respectively) were inoculated with canary (Serinus canaria) blood containing a Hawaiian isolate of Plasmodium relictum (lineage GRW04), a hemoparasite that causes avian malaria. In two experimental trials, Timor, but not Australian zebra finches developed parasitemia that was detected...
Authors
Erik K. Hofmeister, Christopher N. Balakrishnan, Carter T. Atkinson
Downscaling of climate model output for Alaskan stakeholders Downscaling of climate model output for Alaskan stakeholders
The paper summarizes an end-to-end activity connecting the global climate modeling enterprise with users of climate information in Alaska. The effort included retrieval of the requisite observational datasets and model output, a model evaluation and selection procedure, the actual downscaling by the delta method with its inherent bias-adjustment, and the provision of products to a range...
Authors
John E. Walsh, Uma S. Bhatt, Jeremy S. Littell, Matthew Leonawicz, Michael Lindgren, Thomas A. Kurkowski, Peter A. Bieniek, Richard Thoman, Stephen T. Gray, T. Scott Rupp
Identifying management-relevant research priorities for responding to disease-associated amphibian declines Identifying management-relevant research priorities for responding to disease-associated amphibian declines
A research priority can be defined as a knowledge gap that, if resolved, identifies the optimal course of conservation action. We (a group of geographically distributed and multidisciplinary research scientists) used tools from nominal group theory and decision analysis to collaboratively identify and prioritize information needs within the context of disease-associated amphibian decline...
Authors
Evan H. Campbell Grant, M. J. Adams, Robert N. Fisher, Daniel A. Grear, Brian J. Halstead, Blake R. Hossack, Erin L. Muths, Katherine L. D. Richgels, Robin E. Russell, Kelly L. Smalling, J. Hardin Waddle, Susan C. Walls, C. LeAnn White
By
Ecosystems Mission Area, Water Resources Mission Area, Biological Threats and Invasive Species Research Program, Species Management Research Program, Eastern Ecological Science Center, Forest and Rangeland Ecosystem Science Center, Fort Collins Science Center, National Wildlife Health Center, New Jersey Water Science Center, Northern Rocky Mountain Science Center, Western Ecological Research Center (WERC), Wetland and Aquatic Research Center