Publications
This list of publications includes peer-review journal articles, official USGS publications series, reports and more authored by scientists in the Ecosystems Mission Area. A database of all USGS publications, with advanced search features, can be accessed at the USGS Publications Warehouse.
Filter Total Items: 42704
Effects of host species and environment on the skin microbiome of Plethodontid salamanders Effects of host species and environment on the skin microbiome of Plethodontid salamanders
The amphibian skin microbiome is recognized for its role in defence against pathogens, including the deadly fungal pathogen Batrachochytrium dendrobatidis (Bd). Yet, we have little understanding of evolutionary and ecological processes that structure these communities, especially for salamanders and closely related species. We investigated patterns in the distribution of bacterial...
Authors
Carly R. Muletz-Wolz, Stephanie A. Yarwood, Evan H. Campbell Grant, Robert C. Fleischer, Karen R. Lips
On the exchange of sensible and latent heat between the atmosphere and melting snow On the exchange of sensible and latent heat between the atmosphere and melting snow
The snow energy balance is difficult to measure during the snowmelt period, yet critical for predictions of water yield in regions characterized by snow cover. Robust simplifications of the snowmelt energy balance can aid our understanding of water resources in a changing climate. Research to date has demonstrated that the net turbulent flux (FT) between a melting snowpack and the...
Authors
Paul C. Stoy, Erich H. Peitzsch, David J. A. Wood, Daniel Rottinghaus, Georg Wohlfahrt, Michael Goulden, Helen Ward
Delineating and identifying long-term changes in the whooping crane (Grus americana) migration corridor Delineating and identifying long-term changes in the whooping crane (Grus americana) migration corridor
Defining and identifying changes to seasonal ranges of migratory species is required for effective conservation. Historic sightings of migrating whooping cranes (Grus americana) have served as sole source of information to define a migration corridor in the Great Plains of North America (i.e., Canadian Prairies and United States Great Plains) for this endangered species. We updated this...
Authors
Aaron T. Pearse, Matt Rabbe, Lara M. Juliusson, Mark T. Bidwell, Lea Craig-Moore, David A. Brandt, Wade C. Harrell
Imperfect pathogen detection from non-invasive skin swabs biases disease inference Imperfect pathogen detection from non-invasive skin swabs biases disease inference
1. Conservation managers rely on accurate estimates of disease parameters, such as pathogen prevalence and infection intensity, to assess disease status of a host population. However, these disease metrics may be biased if low-level infection intensities are missed by sampling methods or laboratory diagnostic tests. These false negatives underestimate pathogen prevalence and overestimate...
Authors
Graziella V. DiRenzo, Evan H. Campbell Grant, Ana V. Longo, Christian Che-Castaldo, Kelly R. Zamudio, Karen Lips
Improving estimation of flight altitude in wildlife telemetry studies Improving estimation of flight altitude in wildlife telemetry studies
Altitude measurements from wildlife tracking devices, combined with elevation data, are commonly used to estimate the flight altitude of volant animals. However, these data often include measurement error. Understanding this error may improve estimation of flight altitude and benefit applied ecology. There are a number of different approaches that have been used to address this...
Authors
Sharon A. Poessel, Adam E. Duerr, Jonathan C. Hall, Melissa A. Braham, Todd E. Katzner
Evaluating GPS biologging technology for studying spatial ecology of large constricting snakes Evaluating GPS biologging technology for studying spatial ecology of large constricting snakes
Background: GPS telemetry has revolutionized the study of animal spatial ecology in the last two decades. Until recently, it has mainly been deployed on large mammals and birds, but the technology is rapidly becoming miniaturized, and applications in diverse taxa are becoming possible. Large constricting snakes are top predators in their ecosystems, and accordingly they are often a...
Authors
Brian Smith, Kristen M. Hart, Frank J. Mazzotti, Mathieu Basille, Christina M. Romagosa
Genomic evolution, recombination, and inter-strain diversity of chelonid alphaherpesvirus 5 from Florida and Hawaii green sea turtles with fibropapillomatosis Genomic evolution, recombination, and inter-strain diversity of chelonid alphaherpesvirus 5 from Florida and Hawaii green sea turtles with fibropapillomatosis
Chelonid alphaherpesvirus 5 (ChHV5) is a herpesvirus associated with fibropapillomatosis (FP) in sea turtles worldwide. Single-locus typing has previously shown differentiation between Atlantic and Pacific strains of this virus, with low variation within each geographic clade. However, a lack of multi-locus genomic sequence data hinders understanding of the rate and mechanisms of ChHV5
Authors
Cheryl L. Morrison, Luke R. Iwanowicz, Thierry M. Work, Elizabeth Fahsbender, Mya Breitbart, Cynthia R. Adams, Deborah D. Iwanowicz, Lakyn Sanders, Mathias Ackermann, Robert S. Cornman
Foraging and fasting can influence contaminant concentrations in animals: an example with mercury contamination in a free-ranging marine mammal Foraging and fasting can influence contaminant concentrations in animals: an example with mercury contamination in a free-ranging marine mammal
Large fluctuations in animal body mass in relation to life-history events can influence contaminant concentrations and toxicological risk. We quantified mercury concentrations in adult northern elephant seals (Mirounga angustirostris) before and after lengthy at sea foraging trips (n = 89) or fasting periods on land (n = 27), and showed that mercury concentrations in blood and muscle...
Authors
Sarah H. Peterson, Joshua T. Ackerman, Daniel E. Crocker, Daniel P. Costa
Molecular phylogeny of the Nearctic and Mesoamerican freshwater mussel genus Megalonaias Molecular phylogeny of the Nearctic and Mesoamerican freshwater mussel genus Megalonaias
Megalonaias is the most geographically widespread genus of the subfamily Ambleminae and is distributed across much of the eastern half of North America, from Minnesota to Nicaragua. Despite the large geographic distribution, the species-level diversity of Megalonaias is quite depauperate (2 spp.), suggesting the genus may not be constrained by the same physical, ecological, or...
Authors
John M. Pfeiffer, Ashley Sharpe, Nathan A. Johnson, Kitty F. Emery, Lawrence M. Page
Grass is not always greener: Rodenticide exposure of a threatened species near marijuana growing operations Grass is not always greener: Rodenticide exposure of a threatened species near marijuana growing operations
Objective Marijuana (Cannabis spp.) growing operations (MGO) in California have increased substantially since the mid-1990s. One environmental side-effect of MGOs is the extensive use of anticoagulant rodenticides (AR) to prevent damage to marijuana plants caused by wild rodents. In association with a long-term demographic study, we report on an observation of brodifacoum AR exposure in...
Authors
Alan B. Franklin, Peter C. Carlson, Angela Rex, Jeremy T. Rockweit, David Garza, Emily Culhane, Steven F Volker, Robert J. Dusek, Valerie I. Shearn-Bochsler, Mourad W. Gabriel, Katherine E. Horak
Host-pathogen metapopulation dynamics suggest high elevation refugia for boreal toads Host-pathogen metapopulation dynamics suggest high elevation refugia for boreal toads
Emerging infectious diseases are an increasingly common threat to wildlife. Chytridiomycosis, caused by the fungal pathogen Batrachochytrium dendrobatidis (Bd), is an emerging infectious disease that has been linked to amphibian declines around the world. Few studies exist that explore amphibian-Bd dynamics at the landscape scale, limiting our ability to identify which factors are...
Authors
Brittany A. Mosher, Larissa L. Bailey, Erin L. Muths, Kathryn P. Huyvaert
Molecular and morphological data reveal non-monophyly and speciation in imperiled freshwater mussels (Anodontoides and Strophitus) Molecular and morphological data reveal non-monophyly and speciation in imperiled freshwater mussels (Anodontoides and Strophitus)
Accurate taxonomic placement is vital to conservation efforts considering many intrinsic biological characteristics of understudied species are inferred from closely related taxa. The rayed creekshell, Anodontoides radiatus (Conrad, 1834), exists in the Gulf of Mexico drainages from western Florida to Louisiana and has been petitioned for listing under the Endangered Species Act. We set...
Authors
Chase H. Smith, Nathan A. Johnson, John M. Pfeiffer, Michael M. Gangloff