Publications
This list of publications includes peer-review journal articles, official USGS publications series, reports and more authored by scientists in the Ecosystems Mission Area. A database of all USGS publications, with advanced search features, can be accessed at the USGS Publications Warehouse.
Filter Total Items: 42702
A cross inoculation experiment reveals Ophidiomyces ophiodiicola and Nannizziopsis guarroi can each infect both snakes and lizards A cross inoculation experiment reveals Ophidiomyces ophiodiicola and Nannizziopsis guarroi can each infect both snakes and lizards
Host range and specificity are key concepts in the study of infectious diseases. However, both concepts remain largely undefined for many influential pathogens, including many fungi within the Onygenales order. This order encompasses reptile-infecting genera (Nannizziopsis, Ophidiomyces, and Paranannizziopsis) formerly classified as the Chrysosporium anamorph of Nannizziopsis vriesii...
Authors
Savannah L Gentry, Jeffrey M. Lorch, Julia S. Lankton, Anne Pringle
Climate change and pulse migration: Intermittent Chugach Inuit occupation of glacial fiords on the Kenai Coast, Alaska Climate change and pulse migration: Intermittent Chugach Inuit occupation of glacial fiords on the Kenai Coast, Alaska
For millennia, Inuit peoples of the Arctic and Subarctic have been challenged by the impacts of climate change on the abundance of key subsistence species. Responses to climate-induced declines in animal populations included switching to alternative food sources and/or migrating to regions of greater availability. We examine these dynamics for the Chugach Inuit (Sugpiat) people of...
Authors
Aron Crowell, Mayumi L. Arimitsu
Challenges and solutions for automated avian recognition in aerial imagery Challenges and solutions for automated avian recognition in aerial imagery
Remote aerial sensing provides a non-invasive, large geographical-scale technology for avian monitoring, but the manual processing of images limits its development and applications. Artificial Intelligence (AI) methods can be used to mitigate this manual image processing requirement. The implementation of AI methods, however, has several challenges: (1) imbalanced (i.e., long-tailed)...
Authors
Zhonqgi Miao, Stella X Yu, Kyle Lawrence Landolt, Mark D. Koneff, Timothy White, Luke J. Fara, Enrika Hlavacek, Bradley A. Pickens, Travis J. Harrison, Wayne M. Getz
Factors influencing egg thiamine concentrations of Lake Ontario lake trout: 2019–2020 Factors influencing egg thiamine concentrations of Lake Ontario lake trout: 2019–2020
In the Great Lakes region, thiamine deficiency is considered a recruitment bottleneck for lake trout Salvelinus namaycush and has been correlated with the consumption of non-native alewife Alosa pseudoharengus. While alewife, the most abundant forage fish in Lake Ontario, are the predominant prey for lake trout, they also consume benthic prey such as round goby Neogobius melanostomus...
Authors
Aaron Heisey, Christopher Osborne, Brian F. Lantry, Donald E. Tillitt, Jacques Rinchard
Assessment of potential recovery viability for Colorado Pikeminnow Ptychocheilus lucius in the Colorado River in Grand Canyon Assessment of potential recovery viability for Colorado Pikeminnow Ptychocheilus lucius in the Colorado River in Grand Canyon
Colorado Pikeminnow Ptychocheilus lucius, the Colorado River’s top native predatory fish, was historically distributed from the Gulf of California delta to the upper reaches of the Green, Colorado, and San Juan rivers in the Colorado River basin in the Southwestern US. In recent decades Colorado Pikeminnow population abundance has declined, primarily due to predation by warmwater...
Authors
Kimberly L. Dibble, Charles Yackulic, Kevin R. Bestgen, Keith B. Gido, Tildon Jones, Mark McKinstry, Doug Osmundson, Dale Ryden, Robert C. Schelly
Marmots do not drink coffee: Human urine contributions to the nitrogen budget of a popular national park destination Marmots do not drink coffee: Human urine contributions to the nitrogen budget of a popular national park destination
Reactive nitrogen (Nr) concentrations are higher than expected for mountain lakes in Rocky Mountain National Park, and for many years, high Nr concentrations have been attributed to atmospheric Nr deposition from regional and more distant emission sources, including combustion of fossil fuels and agricultural activities. Here, we estimated the contribution from a very local source, that...
Authors
Jill Baron, Timothy Weinmann, Varun Kirk Acharya, Caitlin Charlton, Koren Nydick, Scott Esser
Management of vampire bats and rabies: Past, present, and future Management of vampire bats and rabies: Past, present, and future
Rabies virus transmitted via the bite of common vampire bats (Desmodus rotundus) has surpassed canine-associated cases as the predominant cause of human rabies in Latin America. Cattle, the preferred prey of D. rotundus, suffer extensive mortality from vampire bat associated rabies, with annual financial losses estimated in the tens of millions of dollars. Organized attempts to manage or...
Authors
Tonie E. Rocke, Daniel G. Streicker, Ariel Elizabeth Leon
The concept of land bridge marshes in the Mississippi River Delta and implications for coastal restoration The concept of land bridge marshes in the Mississippi River Delta and implications for coastal restoration
Louisiana has high coastal wetland loss rates due to natural processes such as subsidence and anthropogenic activities such as construction of river levees and dams, pervasive alteration of surface hydrology by local industries such as oil and gas, and navigation. With the exception of the Atchafalaya River discharge area, most of Louisiana's marsh coastline is retreating and coastal...
Authors
John W. Day, Robert R. Twilley, Angelina Freeman, Brady Couvillion, Tracy Quirk, Navid H. Jafari, Giulio Mariotti, Rachael Hunter, Charles Norman, G. Paul Kemp, John R. White, Ehab Meselhe
Inland water greenhouse gas budgets for RECCAP2: 2. Regionalization and homogenization of estimates Inland water greenhouse gas budgets for RECCAP2: 2. Regionalization and homogenization of estimates
Inland waters are important sources of the greenhouse gasses (GHGs) carbon dioxide (CO2), methane (CH4) and nitrous oxide (N2O) to the atmosphere. In the framework of the 2nd phase of the REgional Carbon Cycle Assessment and Processes (RECCAP-2) initiative, we synthesize existing estimates of GHG emissions from streams, rivers, lakes and reservoirs, and homogenize them with regard to...
Authors
Ronny Lauerwald, George H. Allen, Bridget Deemer, Shaoda Liu, Taylor Maavara, Peter Raymond, Lewis Alcott, David Bastviken, Adam Hastie, Meredith A. Holgerson, Matthew S. Johnson, Bernhard Lehner, Peirong Lin, Alessandra Marzadri, Lishan Ran, Hanqin Tian, Xiao Yang, Yuanzhi Yao, Pierre Regnier
Inland water greenhouse gas budgets for RECCAP2: 1. State-of-the-art of global scale assessments Inland water greenhouse gas budgets for RECCAP2: 1. State-of-the-art of global scale assessments
Inland waters are important sources of the greenhouse gasses (GHGs) carbon dioxide (CO2), methane (CH4) and nitrous oxide (N2O) to the atmosphere. In the framework of the 2nd phase of the REgional Carbon Cycle Assessment and Processes (RECCAP-2) initiative, we review the state of the art in estimating inland water GHG budgets at global scale, which has substantially advanced since the...
Authors
Ronny Lauerwald, George H. Allen, Bridget Deemer, Shaoda Liu, Taylor Maavara, Peter Raymond, Lewis Alcott, David Bastviken, Adam Hastie, Meredith A. Holgerson, Matthew S. Johnson, Bernhard Lehner, Peirong Lin, Alessandra Marzadri, Lishan Ran, Hanqin Tian, Xiao Yang, Yuanzhi Yao, Pierre Regnier
Distribution and abundance of Southwestern Willow Flycatchers (Empidonax traillii extimus) on the upper San Luis Rey River, San Diego County, California—2022 data summary Distribution and abundance of Southwestern Willow Flycatchers (Empidonax traillii extimus) on the upper San Luis Rey River, San Diego County, California—2022 data summary
Executive Summary We surveyed for Southwestern Willow Flycatchers (Empidonax traillii extimus; flycatcher) along the upper San Luis Rey River near Lake Henshaw in Santa Ysabel, California, in 2022. Surveys were completed at four locations: three downstream from Lake Henshaw, where surveys occurred from 2015 to 2021 (Rey River Ranch [RRR], Cleveland National Forest [CNF], Vista Irrigation...
Authors
Scarlett L. Howell, Barbara E. Kus
Ambrosia beetles (Coleoptera: Curculionidae) can directly transmit the fungal pathogens responsible for Rapid ʻŌhiʻa Death Ambrosia beetles (Coleoptera: Curculionidae) can directly transmit the fungal pathogens responsible for Rapid ʻŌhiʻa Death
The ecologically and culturally vital tree species, ʻōhiʻa lehua (Metrosideros polymorpha), is threatened by the fungal pathogens Ceratocystis lukuohia and Ceratocystis huliohia, the causal agents of the disease complex called Rapid ʻŌhiʻa Death (ROD). Four invasive ambrosia beetle (Coleoptera: Curculionidae: Scolytinae) species in the Xyleborini tribe colonize ROD Ceratocystis-infested...
Authors
Kylle Roy, Kelly Jaenecke, Ellen Dunkle, Dan Mikros, Robert W. Peck