Publications
This list of publications includes peer-review journal articles, official USGS publications series, reports and more authored by scientists in the Ecosystems Mission Area. A database of all USGS publications, with advanced search features, can be accessed at the USGS Publications Warehouse.
Filter Total Items: 42888
The future of fungi: Threats and opportunities The future of fungi: Threats and opportunities
The fungal kingdom represents an extraordinary diversity of organisms with profound impacts across animal, plant, and ecosystem health. Fungi simultaneously support life, by forming beneficial symbioses with plants and producing life-saving medicines, and bring death, by causing devastating diseases in humans, plants, and animals. With climate change, increased antimicrobial resistance...
Authors
Nicola T. Case, Judith Berman, David S. Blehert, Robert A. Cramer, Christina A. Cuomo, Cameron R. Currie, Iuliana V. Ene, Matthew C. Fisher, Lillian K. Fritz-Laylin, Aleeza C. Gerstein, N. Louise Glass, Neil A. R. Gow, Sarah J. Gurr, Chris Todd Hittinger, Tobias M. Hohl, Iliyan D. Iliev, Timothy Y. James, Hailing Jin, Bruce S. Klein, James W. Kronstad, Jeffrey M. Lorch, Victoria McGovern, Aaron P. Mitchell, Julia A. Segre, Rebecca S. Shapiro, Donald C. Sheppard, Anita Sil, Jason E. Stajich, Eva E. Stukenbrock, John W. Taylor, Dawn Thompson, Gerard D. Wright, Joseph Heitman, Leah E. Cowen
Snake River fall Chinook salmon research and monitoring Snake River fall Chinook salmon research and monitoring
In 2021, the U.S. Geological Survey (USGS) focused adult salmon survey efforts in the Snake River on deepwater redd searches and fish collection for parentage-based tagging (PBT) analyses. We use used a boat-mounted underwater video camera to count 93 deepwater redds at 17 of the 28 sites surveyed. Redd depths averaged 3.9 m. In conjunction with the Idaho Power Company, we collected...
Modeling protected species distributions and habitats to inform siting and management of pioneering ocean industries: A case study for Gulf of Mexico aquaculture Modeling protected species distributions and habitats to inform siting and management of pioneering ocean industries: A case study for Gulf of Mexico aquaculture
Marine Spatial Planning (MSP) provides a process that uses spatial data and models to evaluate environmental, social, economic, cultural, and management trade-offs when siting (i.e., strategically locating) ocean industries. Aquaculture is the fastest-growing food sector in the world. The United States (U.S.) has substantial opportunity for offshore aquaculture development given the size...
Authors
Nicholas A Farmer, Jessica R Powell, James A Morris, Melissa S Soldevilla, Lisa C. Wickliffe, Jonathan A Jossart, Jonathan K MacKay, Alyssa L Randall, Gretchen E Bath, Penny Ruvelas, Laura Gray, Jennifer Lee, Wendy Piniak, Lance Garrison, Robert Hardy, Kristen Hart, Christopher Sasso, Lesley Stokes, Kenneth L Riley
Mangrove Wetlands Mangrove Wetlands
No abstract available.
Authors
Robert R. Twilley, Andre S. Rovai, Ken Krauss
Diversity in spawning habitat use among Great Lakes Cisco populations Diversity in spawning habitat use among Great Lakes Cisco populations
Cisco (Coregonus artedi) once dominated fish communities in the Laurentian Great Lakes. Restoring the abundance and distribution of this species has emerged as a management priority, yet our understanding of Cisco spawning habitat use is insufficient to characterise habitat needs for these populations and assess whether availability of suitable spawning habitat could be a constraint to...
Authors
Matthew R. Paufve, Suresh Sethi, Brian Weidel, Brian F. Lantry, Daniel L. Yule, Lars G. Rudstam, Jory L. Jonas, Eric K. Berglund, Michael J. Connerton, Dimitry Gorsky, Matthew Herbert, Jason Smith
Projected stream fish community risk to climate impacts in the Northeastern and Midwestern United States Projected stream fish community risk to climate impacts in the Northeastern and Midwestern United States
Climate change is expected to alter stream fish habitat potentially leading to changes in the composition and distribution of fish communities. In the Northeastern and Midwestern United States we identified the distribution and characteristics of those fish communities most and least at risk of experiencing changes in climate which deviate from the climate they are associated with. We...
Authors
Nicholas Sievert, Craig P. Paukert, J. B. Whittier, Wesley Daniel, D.M. Infante, Jana S. Stewart
A generically parameterized model of Lake eutrophication: The impact of Stoichiometric ratios and constraints on the abundance of natural phytoplankton communities (GPLake-S) A generically parameterized model of Lake eutrophication: The impact of Stoichiometric ratios and constraints on the abundance of natural phytoplankton communities (GPLake-S)
Water quality improvement to avoid excessive phytoplankton blooms often requires eutrophication management where both phosphorus (P) and nitrogen (N) play a role. While empirical eutrophication studies and ecological resource competition theory both provide insight into phytoplankton abundance in response to nutrient loading, they are not seamlessly linked in the current state of...
Authors
Manqi Chang, Donald L. DeAngelis, Jan H. Janse, Annette B.G. Janssen, Tineke A. Troost, Dianneke van Wijk, Wolf M. Mooij, Sven Teurlincx
Measuring and attributing sedimentary and geomorphic responses to modern climate change: Challenges and opportunities Measuring and attributing sedimentary and geomorphic responses to modern climate change: Challenges and opportunities
Today, climate change is affecting virtually all terrestrial and nearshore settings. This commentary discusses the challenges of measuring climate-driven physical landscape responses to modern global warming: short and incomplete data records, land use and seismicity masking climatic effects, biases in data availability and resolution, and signal attenuation in sedimentary systems. We...
Authors
Amy E. East, Jonathan A. Warrick, Dongfeng Li, Joel B. Sankey, Margaret H. Redsteer, Ann E. Gibbs, Jeffrey A. Coe, Patrick L. Barnard
Ceratocystis lukuohia-infested ambrosia beetle frass as inoculum for Ceratocystis wilt of ʻōhiʻa (Metrosideros polymorpha) Ceratocystis lukuohia-infested ambrosia beetle frass as inoculum for Ceratocystis wilt of ʻōhiʻa (Metrosideros polymorpha)
Metrosideros polymorpha (‘ōhi‘a) trees in Hawaiʻi are dying from two distinct diseases, collectively referred to as rapid ‘ōhi‘a death (ROD), caused by Ceratocystis lukuohia and Ceratocystis huliohia. Boring dust (frass) released when ambrosia beetles attack and colonize infected trees has been suspected as a transmission source. We sampled ambrosia beetle frass from six locations on...
Authors
Marc A Hughes, Kylle Roy, Thomas C Harrington, Eva Brill, Lisa M Keith
Considering behavioral state when predicting habitat use: Behavior-specific spatial models for the endangered Tasmanian wedge-tailed eagle Considering behavioral state when predicting habitat use: Behavior-specific spatial models for the endangered Tasmanian wedge-tailed eagle
Effective planning for species conservation often requires an understanding of habitat use. The resources an animal selects within the landscape relate to its behavioral state and, therefore, incorporating behavior into habitat selection analyses can help inform management of threatened species. Here we present an approach for developing behavior-specific spatial habitat-use models using...
Authors
James M. Pay, Toby A Patterson, Kirstin M Proft, Elissa Z. Cameron, Clare E. Hawkins, Amelia J. Koch, Jason M Wiersma, Todd E. Katzner
Does large dam removal restore downstream riparian vegetation diversity? Testing predictions on the Elwha River, Washington, USA Does large dam removal restore downstream riparian vegetation diversity? Testing predictions on the Elwha River, Washington, USA
Large dams and their removal can profoundly affect riparian ecosystems by altering flow and sediment regimes, hydrochory, and landform dynamics, yet few studies have documented these effects on downstream plant communities. Ecological theory and empirical results suggest that by altering disturbance regimes, reducing hydrochory, and shifting communities to later successional stages, dams...
Authors
Rebecca L. Brown, Cody C. Thomas, Erin S. Cubley, Aaron J. Clausen, Patrick B. Shafroth
Marshes and mangroves as nature-based coastal storm buffers Marshes and mangroves as nature-based coastal storm buffers
Tidal marshes and mangroves are increasingly valued for nature-based mitigation of coastal storm impacts, such as flooding and shoreline erosion hazards, which are growing due to global change. As this review highlights, however, hazard mitigation by tidal wetlands is limited to certain conditions, and not all hazards are equally reduced. Tidal wetlands are effective in attenuating short...
Authors
Stijn Temmerman, Eric M. Horstman, Ken Krauss, Julia C. Mullarney, Ignace Pelckmans, Ken Schoutens