Publications
This list of publications includes peer-review journal articles, official USGS publications series, reports and more authored by scientists in the Ecosystems Mission Area. A database of all USGS publications, with advanced search features, can be accessed at the USGS Publications Warehouse.
Filter Total Items: 42704
Using structural causal modeling to infer the effects of wildfire on foothill yellow-legged frog occurrence Using structural causal modeling to infer the effects of wildfire on foothill yellow-legged frog occurrence
Sierra Nevada ecosystems have been influenced by fire for millennia; however, increasing wildfire size and frequency may yield unforeseen consequences on wildlife populations and their distribution. Foothill yellow-legged frogs Rana boylii have declined in portions of their range and are considered a species of conservation concern. We surveyed streams for foothill yellow legged frogs in...
Authors
Brian J. Halstead, Patrick M. Kleeman, Jonathan P. Rose
Hydrodynamic model of the Colorado River, Glen Canyon Dam to Lees Ferry in Glen Canyon National Recreation Area, Arizona Hydrodynamic model of the Colorado River, Glen Canyon Dam to Lees Ferry in Glen Canyon National Recreation Area, Arizona
The U.S. Geological Survey constructed a two-dimensional hydrodynamic model that was applied to a 15.8-mile tailwater reach of the Colorado River in Glen Canyon that begins 0.25 mile downstream from Glen Canyon Dam and extends to Lees Ferry in Glen Canyon National Recreation Area, Arizona. The model used the Flow and Sediment Transport with Morphological Evolution of Channels (FaSTMECH)...
Authors
Scott A. Wright, Matthew A. Kaplinski, Paul E. Grams
Genotypic clustering of H5N1 avian Influenza viruses in North America evaluated by ordination analysis Genotypic clustering of H5N1 avian Influenza viruses in North America evaluated by ordination analysis
The introduction of HPAI H5N1 clade 2.3.4.4b viruses to North America in late 2021 resulted in avian influenza outbreaks in poultry, mortality events in many wild bird species, and spillover into many mammalian species. Reassortment events with North American low pathogenic virus were identified as early as February 2022 and over 100 genotypes have been characterized. Such diversity...
Authors
Patil Tawidian, Mia K. Torchetti, Mary Lea Killian, Kristina Lantz, Krista E. Dilione, Jourdan M. Ringenberg, Sarah N. Bevins, Juliana Lenoch, Hon S. Ip
Anatidae brood records in Maine during studies of Anas rubripes (American black duck), 1977–94 Anatidae brood records in Maine during studies of Anas rubripes (American black duck), 1977–94
This report describes a compilation of brood observations for Anatidae species breeding in Maine during an 18-year period (1977–94) that were made by the U.S. Geological Survey’s Patuxent Wildlife Research Center while it was operated by the U.S. Fish and Wildlife Service. During four focused studies, variables affecting the declining Anas rubripes (Brewster, 1902) (American black duck...
Authors
Jerry R. Longcore, Christine M. Bunck, Daniel G. McAuley, David A. Clugston
The efficacy of the semiochemical repellent verbenone to reduce ambrosia beetle attack on healthy and Ceratocystis-infested ‘ōhiʻa trees The efficacy of the semiochemical repellent verbenone to reduce ambrosia beetle attack on healthy and Ceratocystis-infested ‘ōhiʻa trees
The Ceratocystis fungal disease complex, rapid ʻōhiʻa death (ROD), has killed over one million ʻōhiʻa (Metrosideros polymorpha), the keystone tree species of Hawaiʻi. The causal fungi can be spread by invasive ambrosia beetles (Coleoptera: Curculionidae) through fungal inoculum found on their bodies and in the frass they produce. Thus, there is a critical need to manage beetle attack on...
Authors
Kylle Roy, Dan Mikros, Dong H Cha, Ellen Dunkle, Jennifer Juzwik, Matthew D. Ginzel
Most random-encounter-model density estimates in camera-based predator-prey studies are unreliable Most random-encounter-model density estimates in camera-based predator-prey studies are unreliable
Population estimates are often required for identifying relationships between predators and their prey and to inform conservation and management actions. The random encounter model (REM) estimates population density of wildlife lacking individually unique markings, based on photographs or videos from remote camera-traps. However, the REM has strict sampling and input requirements that...
Authors
Sean M. Murphy, Benjamin S. Nolan, Felicia Chen, Kathleen Longshore, Matthew T. Simes, Gabrielle A. Berr, Todd Esque
Amphibian richness, rarity, threats, and conservation prospects across the U.S. National Park System Amphibian richness, rarity, threats, and conservation prospects across the U.S. National Park System
We assessed amphibian diversity, rarity, and threats across the National Park System (U.S.A.), which covers 3.5% of the country and 12% of federal lands. At least 230 of 354 (65%) amphibian species documented in the country occur on National Park Service lands. Of species in parks, 17% are at-risk globally and 20% are uncategorized, reflecting still-widespread data deficiencies. National...
Authors
Benjamin J. LaFrance, Andrew M. Ray, Michael T. Tercek, Robert N. Fisher, Blake R. Hossack
A transferable approach for quantifying benthic fish sizes and densities in annotated underwater images A transferable approach for quantifying benthic fish sizes and densities in annotated underwater images
1. Benthic fishes are a common target of scientific monitoring but are difficult to quantify because of their close association to bottom habitats that are hard to access. Advances in image-acquisition technologies, machine vision, and deep learning have made capturing and quantifying fishes with cameras increasingly feasible. We present a method and open-source software called...
Authors
Peter C. Esselman, Shadi Moradi, Joseph K. Geisz, Christopher Roussi
Potentially toxic elements in wild Agassiz’s desert tortoises: Tissue concentrations and association with disease Potentially toxic elements in wild Agassiz’s desert tortoises: Tissue concentrations and association with disease
Background: Desert tortoise (Gopherus agassizii) populations have continued to decline due to infectious and other diseases, predation, and habitat alteration. The potential contribution of minerals and heavy metals to tortoise health and susceptibility to disease remains uncertain. Objective: The objective of this study was to evaluate the results of elemental analysis of trace minerals...
Authors
Kristin H. Berry, Mary M. Christopher, Elliiott Jacobson
Themed social networking groups as effective sources of data: A country-wide survey on invasive bigheaded carp (Hipophthalmichthys molitrix and H. nobilis) detection and distribution Themed social networking groups as effective sources of data: A country-wide survey on invasive bigheaded carp (Hipophthalmichthys molitrix and H. nobilis) detection and distribution
Citizen science commonly uses social networking platforms because they provide the easiest way to contact people. Social networking platforms can also be especially effective in that they gather people by interest and region. By sharing questionnaires and collecting photographs in angling-themed Facebook groups, we assessed the applicability of social networking groups in citizen science...
Authors
Zoltán Vitál, Duane Chapman, Béla Halasi-Kovács, Attila Mozsár
Surveying waterfowl broods in wetlands using aerial drones Surveying waterfowl broods in wetlands using aerial drones
Effective waterfowl management relies on the collection of relevant demographic data to inform land management decisions; however, some types of data are difficult to obtain. For waterfowl, brood surveys are difficult to conduct because wetland habitats often obscure ducklings from being visually assessed. Here, we used Unoccupied Aerial Systems (UAS) to assess what wetland habitat...
Authors
Desmond Alexander Mackell, Michael L. Casazza, Cory T. Overton, Kevin Buffington, Chase M. Freeman, Josh T. Ackerman, Karen M. Thorne
Evaluation of a carbon dioxide fish barrier through numerical modelling Evaluation of a carbon dioxide fish barrier through numerical modelling
The Chicago Area Waterway System (CAWS) is a potential route for the migration of aquatic invasive species from the Mississippi River Basin into the Great Lakes. Electric dispersal barriers were installed in the Chicago Sanitary Ship Canal, within CAWS, to prevent invasive fish from reaching the Great Lakes. Despite the high efficiency of these barriers, occasional maintenance events...
Authors
Marcela Politano, Aaron R. Cupp, David Smith, Avery Schemmel, P. Ryan Jackson, Jeff Zuercher