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Publications

This list of publications includes peer-review journal articles, official USGS publications series, reports and more authored by scientists in the Ecosystems Mission Area. A database of all USGS publications, with advanced search features, can be accessed at the USGS Publications Warehouse.  

Filter Total Items: 42702

A simplified field protocol for genetic sampling of birds using buccal swabs A simplified field protocol for genetic sampling of birds using buccal swabs

DNA sampling is an essential prerequisite for conducting population genetic studies. For many years, blood sampling has been the preferred method for obtaining DNA in birds because of their nucleated red blood cells. Nonetheless, use of buccal swabs has been gaining favor because they are less invasive yet still yield adequate amounts of DNA for amplifying mitochondrial and nuclear...
Authors
Julia T. Vilstrup, Thomas D. Mullins, Mark P. Miller, Will McDearman, Jeffrey R. Walters, Susan M. Haig

Effect of cattle exclosures on Columbia Spotted Frog abundance Effect of cattle exclosures on Columbia Spotted Frog abundance

Livestock grazing is an important land use in the western USA and can have positive or negative effects on amphibians. Columbia Spotted Frog (Rana luteiventris) often use ponds that provide water for cattle. We conducted a long-term manipulative study on US Forest Service land in northeastern Oregon to determine the effects of full and partial exclosures that limited cattle access to...
Authors
M. J. Adams, Christopher Pearl, Thierry Chambert, Brome McCreary, Stephanie Galvan, Jennifer Rowe

Rare long-distance dispersal of the Island Night Lizard, Xantusia riversiana, maintains high diversity in a fragmented environment Rare long-distance dispersal of the Island Night Lizard, Xantusia riversiana, maintains high diversity in a fragmented environment

The Island Night Lizard (Xantusia riversiana) is endemic to three of the Channel Islands off the coast of California, USA. Introduced species such as goats, sheep, and cats have profoundly affected the fauna and flora of the islands for over 150 years, but most of these non-native species have been recently removed. We measured the distribution of genetic diversity in Island Night...
Authors
Ryan P. O’Donnell, Charles A. Drost, Gary M. Fellers, Benjamin A. Crabb, Karen E. Mock

Waterbird habitat in California's Central Valley basins under climate, urbanization, and water management scenarios Waterbird habitat in California's Central Valley basins under climate, urbanization, and water management scenarios

California's Central Valley provides critical, but threatened habitat and food resources for migrating and wintering waterfowl, shorebirds, and other waterbirds. The Central Valley is comprised of nine basins that were defined by the Central Valley Joint Venture (CVJV) to assist in conservation planning. Basins vary in composition and extent of habitats, which primarily include croplands...
Authors
Elliott Matchett, Joseph P. Fleskes

Gauging resource exploitation by juvenile Chinook salmon (Oncorhynchus tshawytscha) in restoring estuarine habitat Gauging resource exploitation by juvenile Chinook salmon (Oncorhynchus tshawytscha) in restoring estuarine habitat

In the context of delta restoration and its impact on salmonid rearing, success is best evaluated based on whether out-migrating juvenile salmon can access and benefit from suitable estuarine habitat. Here, we integrated 3 years of post-restoration monitoring data including habitat availability, invertebrate prey biomass, and juvenile Chinook salmon (Oncorhynchus tshawytscha)...
Authors
Melanie J. Davis, Christopher S. Ellings, Isa Woo, Sayre Hodgson, Kimberly A. Larsen, Glynnis Nakai

Enhanced invertebrate prey production following estuarine restoration supports foraging for multiple species of juvenile salmonids (Oncorhynchus spp.) Enhanced invertebrate prey production following estuarine restoration supports foraging for multiple species of juvenile salmonids (Oncorhynchus spp.)

Estuaries provide crucial foraging resources and nursery habitat for threatened populations of anadromous salmon. As such, there has been a global undertaking to restore habitat and tidal processes in modified estuaries. The foraging capacity of these ecosystems to support various species of out-migrating juvenile salmon can be quantified by monitoring benthic, terrestrial, and pelagic
Authors
Isa Woo, Melanie J. Davis, Christopher S. Ellings, Glynnis Nakai, John Y. Takekawa, Susan E.W. De La Cruz

Occurrence of Batrachochytrium dendrobatidis in anurans of the Mediterranean region of Baja California, México Occurrence of Batrachochytrium dendrobatidis in anurans of the Mediterranean region of Baja California, México

Chytridiomycosis is caused by the fungal pathogen Batrachochytrium dendrobatidis (Bd) and is regarded as one of the most significant threats to global amphibian populations. In México, Bd was first reported in 2003 and has now been documented in 13 states. We visited 33 localities and swabbed 199 wild-caught anurans from 7 species (5 native, 2 exotic) across the Mediterranean region of...
Authors
Anny Peralta-Garcia, Andrea J. Adams, Cheryl J. Briggs, Patricia Galina-Tessaro, Jorge H. Valdez-Villavicencio, Bradford Hollingsworth, H. Bradley Shaffer, Robert N. Fisher

Artificial light at night confounds broad-scale habitat use by migrating birds Artificial light at night confounds broad-scale habitat use by migrating birds

With many of the world's migratory bird populations in alarming decline, broad-scale assessments of responses to migratory hazards may prove crucial to successful conservation efforts. Most birds migrate at night through increasingly light-polluted skies. Bright light sources can attract airborne migrants and lead to collisions with structures, but might also influence selection of...
Authors
James D. McLaren, Jeffrey J. Buler, Tim Schreckengost, Jaclyn A. Smolinsky, Matthew Boone, E. Emiel van Loon, Deanna K. Dawson, Eric L. Walters

Conservation and restoration of mangroves: Global status, perspectives, and prognosis Conservation and restoration of mangroves: Global status, perspectives, and prognosis

Mangrove forests provide critical services around the globe to both human populations and the ecosystems they occupy. However, losses of mangrove habitat of more than 50% have been recorded in some parts of the world, and these losses are largely attributable to human activities. The importance of mangroves and the threats to their persistence have long been recognized, leading to...
Authors
Stephanie S. Romanach, Donald L. DeAngelis, Hock Lye Koh, Yuhong Li, Su Yean Teh, Raja Sulaiman Raja Barizan, Lu Zhai

Evidence of repeated long-distance movements by lake charr Salvelinus namaycush in Lake Huron Evidence of repeated long-distance movements by lake charr Salvelinus namaycush in Lake Huron

Movements and dispersal distances of acoustically-tagged adult lake charr Salvelinus namaycush were estimated based on detections at acoustic receivers in Lake Huron during 2010–2014. Most lake charr were detected only at receivers proximate to their release location or were not detected at all, but 3–9% of tagged lake charr were detected at receivers located over 100 km from their...
Authors
Stephen Riley, Tom Binder, Taaja R. Tucker, Charles C. Krueger

Effects of host species and environment on the skin microbiome of Plethodontid salamanders Effects of host species and environment on the skin microbiome of Plethodontid salamanders

The amphibian skin microbiome is recognized for its role in defence against pathogens, including the deadly fungal pathogen Batrachochytrium dendrobatidis (Bd). Yet, we have little understanding of evolutionary and ecological processes that structure these communities, especially for salamanders and closely related species. We investigated patterns in the distribution of bacterial...
Authors
Carly R. Muletz-Wolz, Stephanie A. Yarwood, Evan H. Campbell Grant, Robert C. Fleischer, Karen R. Lips

On the exchange of sensible and latent heat between the atmosphere and melting snow On the exchange of sensible and latent heat between the atmosphere and melting snow

The snow energy balance is difficult to measure during the snowmelt period, yet critical for predictions of water yield in regions characterized by snow cover. Robust simplifications of the snowmelt energy balance can aid our understanding of water resources in a changing climate. Research to date has demonstrated that the net turbulent flux (FT) between a melting snowpack and the...
Authors
Paul C. Stoy, Erich H. Peitzsch, David J. A. Wood, Daniel Rottinghaus, Georg Wohlfahrt, Michael Goulden, Helen Ward
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