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Publications

Browse more than 160,000 publications authored by our scientists over the past 100+ year history of the USGS.  Publications available are: USGS-authored journal articles, series reports, book chapters, other government publications, and more.

Filter Total Items: 175017

Identification of novel hepaciviruses and Sylvilagus-associated viruses via metatranscriptomics in North American lagomorphs Identification of novel hepaciviruses and Sylvilagus-associated viruses via metatranscriptomics in North American lagomorphs

Cottontails (Sylvilagus spp.) and jackrabbits (Lepus spp.) within the Leporidae family are native to North America and are found in a wide range of habitats, including deserts, forests, and grasslands. Although there is a growing body of research describing the arrival of the highly virulent rabbit haemorrhagic disease virus 2 (RHDV2, GI.2) on this continent, and its impact on native...
Authors
Maria Jenckel, Wei-Shan Chang, Emily A. Wright, Robert D. Bradley, Robert J. Dusek, Hon S. Ip, Robyn Hall, Ina Smith, Tanja Strive

2024 Surprise Inlet landslides: Insights from a prototype landslide‐triggered tsunami monitoring system in Prince William Sound, Alaska 2024 Surprise Inlet landslides: Insights from a prototype landslide‐triggered tsunami monitoring system in Prince William Sound, Alaska

Alaska's coastal communities face growing landslide hazards owing to glacier retreat and extreme weather intensified by the warming climate, yet hazard monitoring remains challenging. As part of ongoing experimental monitoring in Prince William Sound, we detected three large landslides (0.5–2.3 M m3) at Surprise Inlet on 20 September 2024, within the span of an hour. These events were...
Authors
Ezgi Karasozen, Michael E. West, Katherine R. Barnhart, John J. Lyons, Terry Nichols, Lauren N. Schaefer, Bohyun Bahng, Summer Ohlendorf, Dennis M. Staley, Gabriel J. Wolken

A newly identified creeping strand of the Concord fault, San Francisco Bay Area A newly identified creeping strand of the Concord fault, San Francisco Bay Area

The Concord fault constitutes a major branch of the Pacific–North America transform plate boundary in Northern California, bridging the strike‐slip Bartlett Springs ‐ Green Valley Fault system to the north with the Greenville and Calaveras Faults to the south. Like many faults in the San Francisco Bay Area its long‐term slip is partially accommodated by aseismic slip (creep). Although...
Authors
Austin John Elliott, Danielle Madugo, Jessica Vermeer

Estimating mortality of Lake Sturgeon in the Lake Winnebago system using traditional age-based approaches and capture–recapture models Estimating mortality of Lake Sturgeon in the Lake Winnebago system using traditional age-based approaches and capture–recapture models

Objective The Lake Winnebago system in Wisconsin supports a popular winter spear fishery for Lake Sturgeon Acipenser fulvescens. Setting harvest caps for this fishery relies on estimating instantaneous natural mortality rate (M), which can be done using age-based approaches or capture–recapture models that incorporate recoveries of fish with passive integrated transponder (PIT) tags or...
Authors
Jeremiah S. Shrovnal, Margaret H. Stadig, Joshua K. Raabe, Daniel A. Isermann

Expansion of aquatic and marsh area into once forest and agricultural area reflects changing hydrological conditions along the Upper Mississippi and Illinois rivers (1989-2020) Expansion of aquatic and marsh area into once forest and agricultural area reflects changing hydrological conditions along the Upper Mississippi and Illinois rivers (1989-2020)

We examined 30-year trends in the abundance and distribution of aquatic and floodplain vegetation, as well as human land uses in five study reaches of the Upper Mississippi River and one reach of the Illinois River using aerial photography collected in years 1989, 2000, 2010, and 2020. Permanently inundated area increased in all study reaches over the 30-year period. Increases ranged...
Authors
Nathan R. De Jager, Jason J. Rohweder

Hydraulic conductivity and transmissivity estimates from slug tests in wells within the Mississippi Alluvial Plain, Arkansas and Mississippi, 2020 Hydraulic conductivity and transmissivity estimates from slug tests in wells within the Mississippi Alluvial Plain, Arkansas and Mississippi, 2020

During the spring and summer of 2020, the U.S. Geological Survey conducted single-well slug tests on selected observation wells within the Mississippi Alluvial Plain in Arkansas and Mississippi to estimate hydraulic conductivity and transmissivity values for the Mississippi River Valley alluvial and middle Claiborne aquifers. Well and aquifer data were collected from field measurements...
Authors
Aaron L. Pugh

ECCOE Landsat quarterly Calibration and Validation report—Quarter 4, 2024 ECCOE Landsat quarterly Calibration and Validation report—Quarter 4, 2024

Executive Summary The U.S. Geological Survey Earth Resources Observation and Science Calibration and Validation (Cal/Val) Center of Excellence focuses on improving the accuracy, precision, calibration, and product quality of remote-sensing data, leveraging years of multiscale optical system geometric and radiometric calibration and characterization experience. The Earth Resources...
Authors
Md Obaidul Haque, Nahid Hasan, Ashish Shrestha, Rajagopalan Rengarajan, Mark Lubke, Daniel Steinwand, Paul Bresnahan, Jerad L. Shaw, Kathryn Ruslander, Esad Micijevic, Michael J. Choate, Cody Anderson, Jeff Clauson, Kurt Thome, Ed Kaita, Raviv Levy, Jeff Miller, Leibo Ding, Cibele Teixeira Pinto

Assessing spatial variability of nutrients, phytoplankton, and related water-quality constituents in the California Sacramento–San Joaquin Delta at the landscape scale—Comparison of four (2018, 2020, 2021, 2022) spring high-resolution mapping surveys Assessing spatial variability of nutrients, phytoplankton, and related water-quality constituents in the California Sacramento–San Joaquin Delta at the landscape scale—Comparison of four (2018, 2020, 2021, 2022) spring high-resolution mapping surveys

Executive Summary This report summarizes results from boat-based, high-resolution water-quality mapping surveys completed before, during, and after upgrades to the EchoWater Resource Recovery Facility (EchoWater Facility), the regional wastewater facility for the City of Sacramento and surrounding areas, near Elk Grove, California. Surveys were completed in the tidal aquatic environments...
Authors
Emily Richardson, Tamara Kraus, Katy O’Donnell, Jeniffer Soto-Perez, Crystal Sturgeon, Elizabeth Stumpner, Brian Bergamaschi

Estimated annual abundance of migratory Peale's Peregrine Falcons in coastal Washington, USA Estimated annual abundance of migratory Peale's Peregrine Falcons in coastal Washington, USA

Following the recovery of Peregrine Falcons (Falco peregrinus), the US Fish and Wildlife Service began a process to allow “take” (capture) of wild peregrines for falconry in the United States. Recently, that effort involved generating updated estimates of the collective abundance of the three North American peregrine subspecies: F. p. anatum, F. p. tundrius, and F. p. pealei (Peale's...
Authors
Daniel E. Varland, Joseph B. Buchanan, Guthrie S. Zimmerman, Javan Mathias Bauder, Tracy L. Fleming, Brian A. Millsap

Groundwater surveillance of swine pathogens from private wells supplying swine farms in Iowa Groundwater surveillance of swine pathogens from private wells supplying swine farms in Iowa

Biosecurity practices are essential for maintaining pig health and productivity. Despite these measures, pathogen spread still occurs. Water is one of the largest daily inputs on swine farms by volume and is not routinely tested or disinfected before it is consumed by the animals [1-3], making it a poorly understood biosecurity risk. Groundwater from privately-owned wells is a common...
Authors
Gabrielle Doughan, Becca Walthart, Michele Moncrief, Elise Snezek, Kristin Skoland, Aaron D. Firnstahl, Phillip Gauger, Justin Brown, J. L. Bonnema, Mark A. Borchardt, Joe Heffron, Joel P. Stokdyk, Tucker R. Burch, Locke Karriker

Arctic speleothems reveal nearly permafrost-free Northern Hemisphere in the Late Miocene Arctic speleothems reveal nearly permafrost-free Northern Hemisphere in the Late Miocene

Arctic warming is happening at nearly four times the global average rate. Long-term trends of permafrost dynamics cannot be estimated directly from monitoring of present-day thaw processes, requiring paleoclimate-proxy information. Here we use cave carbonates (speleothems) from a northern Siberian cave to determine when the Northern Hemisphere was mostly permafrost-free. At present...
Authors
Anton Vaks, Andrew Mason, Sebastian F.M. Breitenbach, Alena Maria Giesche, Alexander Osinzev, Irina Adrian, Aleksandr Kononov, Stuart Umbo, Franziska A. Lechleitner, Marcelo Rosensaft, Gideon M. Henderson

Differential habitat use of wintering Whooping Cranes throughout the range of the Eastern Migratory Population Differential habitat use of wintering Whooping Cranes throughout the range of the Eastern Migratory Population

In 2001, a reintroduced population of whooping cranes (Grus americana), the Eastern Migratory Population (EMP), was established in the eastern United States. There has been no assessment of habitat use of the EMP across the current winter distribution. During 2 winters, we used radio-telemetry to track groups of cranes each for 1 day. We grouped sites into 3 regions, based on natural...
Authors
Hillary L. Thompson, Anne E Lacy, Robert F Baldwin, Patrick G.R. Jodice
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