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Publications

Browse more than 160,000 publications authored by our scientists over the past 100+ year history of the USGS.  Publications available are: USGS-authored journal articles, series reports, book chapters, other government publications, and more.

Filter Total Items: 175347

Environmental DNA reveals invasion of Puerto Rican waterways by non-native Clarias catfish Environmental DNA reveals invasion of Puerto Rican waterways by non-native Clarias catfish

The Sharptooth walking catfish (Clarias gariepinus) is native to parts of the Middle East, Asia, and Africa but is one of the world's most invasive freshwater fish species. The species’ ability to invade is partly due to its ability to breathe atmospheric oxygen, thereby avoiding hypoxia or poor water quality in receiving waterbodies; further, it can crawl over moist land to disperse to...
Authors
Robert T. Paine, Mark W. Rogers, Amanda E. Rosenberger

Preliminary ground and airborne-based geophysical mapping and modelling of an active hydrothermal system at Mammoth Lakes, California Preliminary ground and airborne-based geophysical mapping and modelling of an active hydrothermal system at Mammoth Lakes, California

Mammoth Lakes, California hosts a productive hydrothermal system within the seismically active south moat of Long Valley Caldera. Surficial evidence of the shallow hydrothermal system includes discrete zones of tree-kill dispersed between Shady Rest Park and the Casa Diablo Geothermal Power Plant (40 MW), as well as east of the power plant. The tree-kill areas are associated with...
Authors
Jacob Elliott Anderson, Jonathan M.G. Glen, Claire Bouligand, Grant Harold Rea-Downing, Tait E. Earney

Community synchrony in seed production is associated with trait similarity and climate across North America Community synchrony in seed production is associated with trait similarity and climate across North America

Mast seeding, the synchronous and highly variable production of seed crops in perennial plants, is a population level phenomenon and has cascading effects in ecosystems. Mast seeding studies are typically conducted at the population/species level. Much less is known about synchrony in mast seeding between species because the necessary long-term data are rarely available. To investigate...
Authors
Jalene M. LaMontagne, David F. Greene, E. Penelope Holland, Jill F. Johnstone, Mark Schulze, Jess K. Zimmerman, Nicholas J. Lyon, Angel Chen, Tom E.X. Miller, Katherine M. Nigro, Snell Rebecca S., Jessica H. Barton, V. Bala Chaudhary, Natalie L. Cleavitt, Elizabeth E. Crone, Walter D. Koenig, Diana Macias, Ian S. Pearse, Miranda D. Redmond

Don’t move a mussel: The role of key environmental drivers and management scale in assessing spatial variation in dreissenid spread risk in the Missouri River Basin Don’t move a mussel: The role of key environmental drivers and management scale in assessing spatial variation in dreissenid spread risk in the Missouri River Basin

The spread of non-native freshwater mussels in North America is a growing threat that has already resulted in substantial ecological and economic damage to infested areas. A primary vector by which invasive mussels spread is watercraft that are transported over land from an infested waterbody to an uninfested waterbody. Management efforts such as watercraft inspection and detection...
Authors
Joseph Raymond, Lucas Bair, Timothy D. Counihan, Wesley M. Daniel, Sofie Duntugan, Matthew Neilson, Michael R. Springborn

The endangered Caney Mountain cave crayfish: A preliminary study of its habitat with brief life history notes The endangered Caney Mountain cave crayfish: A preliminary study of its habitat with brief life history notes

The stygobitic Caney Mountain cave crayfish, Orconectes stygocaneyi, is among the rarest crayfish species in North America. It is known only from Mud Cave, a small linear cave on the 3,200 ha Caney Mountain Conservation Area in Ozark County, Missouri. The species is listed as “Endangered” by the state of Missouri, and “Threatened” by the American Fisheries Society. Previous studies...
Authors
Emila A. Ellingsworth, R.J. DiStefano, Jacob Thomas Westhoff, B.M. O'Brian

Hydrologic investigations and a preliminary conceptual model of the groundwater system at North Penn Area 1 Superfund Site, Souderton, Montgomery County, Pennsylvania Hydrologic investigations and a preliminary conceptual model of the groundwater system at North Penn Area 1 Superfund Site, Souderton, Montgomery County, Pennsylvania

The U.S. Geological Survey (USGS) conducted hydrogeologic investigations, reviewed existing data, and developed a preliminary conceptual model of the groundwater system as part of technical support of the U.S. Environmental Protection Agency (EPA) at the North Penn Area 1 Superfund Site (hereafter, the NP1 Site) located within the Borough of Souderton in Montgomery County, Pennsylvania...
Authors
Lisa A. Senior, Dennis W. Risser, Daniel J. Goode, Philip H. Bird

Ensemble methods for parameter estimation of WRF-Hydro Ensemble methods for parameter estimation of WRF-Hydro

The WRF-Hydro hydrological model has been used in many applications in the past with some level of history matching in the majority of these studies. In this study, we use the iterative Ensemble Smoother (iES), a powerful parameter estimation methodology implemented in the open-source PEST++ software. The iES provides an ensemble solution with an uncertainty bound instead of a single...
Authors
Arezoo RafieeiNasab, Michael N. Fienen, Nina Omani, Ishita Srivastava, Aubrey Dugger

Dynamic treeline and cryosphere response to pronounced mid-Holocene climatic variability in the US Rocky Mountains Dynamic treeline and cryosphere response to pronounced mid-Holocene climatic variability in the US Rocky Mountains

Climate-driven changes in high-elevation forest distribution and reductions in snow and ice cover have major implications for ecosystems and global water security. In the Greater Yellowstone Ecosystem of the Rocky Mountains (United States), recent melting of a high-elevation (3,091 m asl) ice patch exposed a mature stand of whitebark pine (Pinus albicaulis) trees, located ~180 m in...
Authors
Gregory T. Pederson, Daniel K. Stahle, David B McWethy, Matthew Toohey, Johann Jungclaus, Craig Lee, Justin T. Martin, Mio Alt, Nickolas E. Kichas, Nathan J. Chellman, Joseph R. McConnell, Cathy Whitlock

The MIEM guidelines: Minimum information for reporting of environmental metabarcoding data The MIEM guidelines: Minimum information for reporting of environmental metabarcoding data

Environmental DNA (eDNA) and RNA (eRNA) metabarcoding has become a popular tool for assessing biodiversity from environmental samples, but inconsistent documentation of methods, data and metadata makes results difficult to reproduce and synthesise. A working group of scientists have collaborated to produce a set of minimum reporting guidelines for the constituent steps of metabarcoding...
Authors
Katy E. Klymus, Jacoby D. Baker, Cathryn L. Abbott, Rachel J. Brown, Joseph M. Craine, Zachary Gold, Margaret Hunter, Mark D. Johnson, Devin Nicole Jones-Slobodian, Michelle J. Jungbluth, Sean P. Jungbluth, Yer Lor, Aaron P. Maloy, Christopher M. Merkes, Rachel T. Noble, Nastassia V. Patin, Adam Sepulveda, Stephen Frank Spear, Joshua A. Steele, Miwa Takahashi, Alison W. Watts, Susanna Theroux

Integrating Sr isotopes, microchemistry, and genetics to reconstruct Salmonidae species and life history Integrating Sr isotopes, microchemistry, and genetics to reconstruct Salmonidae species and life history

Recent approaches to fisheries research emphasize the importance of the coproduction of knowledge in building resilient and culturally mindful fisheries management frameworks. Despite widespread recognition of the need for Indigenous knowledge and historical reference points as baseline data, archaeological data are rarely included in conservation biology research designs. Here we...
Authors
Ross Anthony Salerno, Remi Murdoch, Taylor Wilcox, Joanna Elmore, Jens Hegg, Catherine S Austin, Michael LeMoine, Jade Luckhurst, Alexandra Fraik, Molly Carney

Shifts in marsh erosion, migration, and wave exposure over nearly two centuries of sea-level rise in the Gulf of Mexico Shifts in marsh erosion, migration, and wave exposure over nearly two centuries of sea-level rise in the Gulf of Mexico

Coastal wetlands are economically important ecosystems, but are at risk to erosion from waves, storms, and sea level rise. However, marshes can persist under rising sea level through vertical accretion and migration into adjacent higher-elevation habitats. We measured rates of marsh shoreline change and migration and compared the results for historical and modern periods in a largely...
Authors
Kathryn E.L. Smith, Joseph F. Terrano, Robert L. Jenkins, Jonathan L Pitchford, Davina Passeri, Christopher G. Smith

Unburned habitat essential for amphibian breeding persistence following wildfire Unburned habitat essential for amphibian breeding persistence following wildfire

Wildfire regimes are changing rapidly with widespread increase in the intensity, frequency, and duration of fire activity, especially in the western United States. Limited studies explore the impacts of wildfires on aquatic taxa and few focus on lentic habitats that are essential for amphibians, many of which are of conservation concern. We capitalized on existing pre-fire surveys for...
Authors
Larissa L. Bailey, Rick Henderson, Wendy A. Estes-Zumpf, Charles C. Rhoades, Ellie Miller, Dominique R. Lujan, Erin L. Muths
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