Publications

Karr (1981), which introduced the index of biotic (or biological) integrity (IBI) has been cited more often (>4,500 times) than any other paper in Fisheries. In this essay, we reflect on the historical context of this seminal publication and its broad, continuing impact on the management of natural resources, especially freshwater ecosystems.

Wastewater treatment effluents (WWTE) present complex risks to aquatic ecosystems that are difficult to characterize using traditional methods. This study systematically evaluated the consistency and performance of transcriptomic-based approaches over time with repeated sampling and with differing experimental approaches (selection of reference condition, grab vs. composite sampling...

The magnitude of natural geologic methane (CH4) emissions to the atmosphere (including emissions of fossil CH4 from offshore and onshore gas and oil seeps, diffuse microseepage, mud volcanoes, volcanic vents, and geothermal areas) is highly uncertain. The largest component of geologic emissions is thought to be microseepage, which is the diffuse flux of CH4 from soils across large areas...

Apex carnivores are known to regulate ecosystem structure and function, including via interactions with syntopic, competitively inferior carnivores. These effects may be dependent on relative carnivore density and resource availability or productivity. We investigated the functional effect of African lions as an apex carnivore on the presence of co-occurring large carnivore species...

Warming winter temperatures are driving range expansion of tropical, cold-sensitive mangroves into temperate ecosystems. Along the Atlantic coast of North America, the mangrove range limit is particularly sensitive to climate variability and historical data demonstrate that the mangrove-salt marsh ecotone on this coast has shifted recurrently during recent centuries. However, a...

Species status assessments require an understanding of underlying population dynamics and important drivers of species demography. Large-scale assessments can be difficult due to challenges collating data obtained through different methods and different sources at multiple scales. Integrated population models (IPMs) provide a unified framework to combine multiple data sources and jointly...

The FluOil tool was developed to help with planning and early response for oil spills in rivers where subsurface oil-sediment interactions result in the formation of oil-particle aggregates (OPA). The turbulence and variable velocity associated with water flowing within a natural stream channel creates the conditions needed for an oil slick to break up into small droplets and mix in the...

Study regionThe Russian River watershed, situated in coastal, northern California, experiences hydrologic extremes, including periodic droughts and flooding. Water managers are working to maintain sustainable water supplies and environmental flows, while mitigating flood risks.Study focusThis paper introduces an integrated hydrology and river operations model for the Russian River...

Earthquake catalogs are essential data inputs for seismic hazard modeling. Because earthquake magnitudes are reported in a variety of types (e.g., local magnitudes and moment magnitudes), magnitude conversion relationships must be used to convert the different magnitude types present in a catalog to a uniform magnitude type to avoid biases in the hazard computation. However, these...

Forecasts of streamflow drought, when streamflow declines below typical levels, are notably less available than for floods or meteorological drought, despite widespread impacts. We apply machine learning (ML) models to forecast streamflow drought 1–13 weeks ahead at 3,219 streamgages across the conterminous United States. We applied two ML methods (Long short-term memory neural networks...

New geochemical, U-Pb geochronology, and Sr-Nd-Hf isotope data provide evidence for the tectonic evolution of the Seventymile terrane in interior Alaska, USA. Ultramafic and mafic rocks of the Seventymile terrane are thought to represent components of a dismembered ophiolite and provide unique constraints on regional terrane evolution and accretion. The Seventymile ophiolite represents...

Extensive mortalities of adult coho salmon (Oncorhynchus kisutch), often called “Urban Runoff Mortality Syndrome” (URMS), have been documented during the fall in creeks where water quality has been degraded by roadway runoff. The primary cause of mortality is 6PPD-quinone (6PPDQ; N-(1,3-dimethylbutyl)-N′-phenyl-p-phenylenediamine quinone)–an ozone transformation product that forms on all...