Publications
Browse more than 160,000 publications authored by our scientists over the past 100+ year history of the USGS. Publications available are: USGS-authored journal articles, series reports, book chapters, other government publications, and more.
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Understanding the drivers of volcano deformation through geodetic model verification and validation Understanding the drivers of volcano deformation through geodetic model verification and validation
Volcano geodesy often involves the use of models to explain observed surface deformation. A variety of forward models are used, from analytical point sources to numerical simulations that consider complex magma system geometries, topography, and material properties. Various inversion methods can then be used to relate observed volcano data to models. Ideally, forward models should be...
Authors
Joshua Allen Crozier, Leif Karlstrom, Emily K. Montgomery-Brown, Mario Angarita, Valerie Cayol, Mary Grace Bato, Taiyi Wang, Ronni Grapenthin, Tara Shreve, Kyle R. Anderson, Ana Astort, Olivier Bodart, Flavio Cannavò, Gilda Currenti, Farshid Dabaghi, Brittany A. Erickson, Deepak Garg, Matthew Head, Adriana Iozzia, Young Cheol Kim, Hélène Le Mével, Camila Novoa Lizama, Cody Rucker, Francesca Silverii, Yan Zhan
Aging contrast: A contrastive learning framework for fish re-identification across seasons and years. Aging contrast: A contrastive learning framework for fish re-identification across seasons and years.
The fields of biology, ecology, and fisheries management are witnessing a growing demand for distinguishing individual fish. In recent years, deep learning methods have emerged as a promising tool for image-based fish recognition. Our study is focused on the re-identification of masu salmon from Japan, wherein fish were individually marked and photographed to evaluate discriminative body
Authors
Weili Shi, Z. Zhou, Benjamin Letcher, Nathaniel P. Hitt, Yoichiro Kanno, R. Futamura, O. Kishida, K. Morita, Sheng Li
Fire regime shapes butterfly communities through changes in nectar resources in an Australian tropical savanna Fire regime shapes butterfly communities through changes in nectar resources in an Australian tropical savanna
Fire-dependent savanna provides key habitat for butterflies globally, but we know little about how fire regimes, including fire frequency and season, affect them. These impacts are likely to be primarily indirect, through changes in overall habitat structure, the abundance of larval host plants, and/or the provision of nectar resources for adults. We examined the relationships among fire...
Authors
Julia B. Leone, Diane L. Larson, Anna E. Richards, Jon Schatz, Alan N. Andersen
An assessment of HgII to preserve carbonate system parameters in organic-rich estuarine waters An assessment of HgII to preserve carbonate system parameters in organic-rich estuarine waters
This work assesses the effectiveness of sample preservation techniques for measurements of pHT (total scale), total dissolved inorganic carbon (CT), and total alkalinity (AT) in organic-rich estuarine waters as well as the internal consistency of measurements and calculations (e.g., AT, pHT, and CT) in these waters. Using mercuric chloride (HgCl2)-treated and untreated water samples...
Authors
Christopher Moore, Robert H. Byrne, Kimberly Yates
U-Pb zircon ages and Lu-Hf isotope systematics across northwestern Mexico: Implications for Cretaceous to Paleocene tectonomagmatic evolution during Farallon subduction U-Pb zircon ages and Lu-Hf isotope systematics across northwestern Mexico: Implications for Cretaceous to Paleocene tectonomagmatic evolution during Farallon subduction
This study presents U-Pb zircon ages and Lu-Hf zircon isotope data for Cretaceous-Paleocene plutonic rocks along a W-E transect in northwestern Mexico. These data are combined with tectonic reconstruction that restores Late Cenozoic extensional deformation and shows the position of magmatism at 36 Ma. Zircon U-Pb ages results span from 142 to 58 Ma and demonstrate that the continental...
Authors
Arlin B. Fonseca-Martinez, Alexander Iriondo, Scott E.K. Bennett, Fred W. McDowell, Carlos Ortega-Obregon
Characterizing the movement of per- and polyfluoroalkyl substances in an avian aquatic–terrestrial food web Characterizing the movement of per- and polyfluoroalkyl substances in an avian aquatic–terrestrial food web
The movement of per- and polyfluoroalkyl substances (PFAS) through linked aquatic–terrestrial food webs is not well understood. Tree swallows (Tachycineta bicolor) in such systems may be exposed to PFAS from multiple abiotic and/or biotic compartments. We show from fatty acid signatures and carbon stable isotopes that tree swallow nestlings in southwestern Ontario fed on both terrestrial...
Authors
Kailee E. Hopkins, Melissa A. McKinney, Amandeep Saini, Robert J. Letcher, Natalie Karouna-Renier, Kim J. Fernie
Deer management generally reduces densities of nymphal Ixodes scapularis, but not prevalence of infection with Borrelia burgdorferi sensu stricto Deer management generally reduces densities of nymphal Ixodes scapularis, but not prevalence of infection with Borrelia burgdorferi sensu stricto
Human Lyme disease–primarily caused by the bacterium Borrelia burgdorferi sensu stricto (s.s.) in North America–is the most common vector-borne disease in the United States. Research on risk mitigation strategies during the last three decades has emphasized methods to reduce densities of the primary vector in eastern North America, the blacklegged tick (Ixodes scapularis). Controlling...
Authors
Alynn Martin, Danielle Buttke, Jordan Raphael, Kelsey Taylor, Sarah Maes, Christina M. Parise, Howard Ginsberg, Paul C. Cross
Multi-omic responses of fish exposed to complex chemical mixtures in the Shenandoah River watershed Multi-omic responses of fish exposed to complex chemical mixtures in the Shenandoah River watershed
To evaluate relationships between different anthropogenic impacts, contaminant occurrence, and fish health, we conducted in situ fish exposures across the Shenandoah River watershed at five sites with different land use. Exposure water was analyzed for over 500 chemical constituents, and organismal, metabolomic, and transcriptomic endpoints were measured in fathead minnows. Adverse...
Authors
David Bertolatus, Larry B. Barber, Christopher J. Martyniuk, Huajun Zhen, Timothy W. Collette, Drew R. Ekman, Aaron Jastrow, Jennifer Rapp, Alan M. Vajda
Arctic-boreal lakes of interior Alaska dominated by contemporary carbon Arctic-boreal lakes of interior Alaska dominated by contemporary carbon
Northern high-latitude lakes are critical sites for carbon processing and serve as potential conduits for the emission of permafrost-derived carbon and greenhouse gases. However, the fate and emission pathways of permafrost carbon in these systems remain uncertain. Here, we used the natural abundance of radiocarbon to identify and trace the predominant sources of methane, carbon dioxide...
Authors
Fenix Garcia-Tigreros, Clayton D. Elder, Martin R. Kurek, Benjamin L. Miller, Xiaomei Xu, Kimberly Wickland, Cluadia I. Czimczik, Mark M. Dornblaser, Robert G. Striegl, Ethan D. Kyzivat, Laurence C. Smith, Robert G.M. Spencer, Charles E. Miller, David Butman
Imperfect detection and misidentification affect inferences from data informing water operation decisions Imperfect detection and misidentification affect inferences from data informing water operation decisions
Objective Managers can modify river flow regimes using fish monitoring data to minimize impacts from water management infrastructure. For example, operation of the gate-controlled Delta Cross Channel (DCC) in California can negatively affect the endangered Sacramento River winter-run Chinook Salmon Oncorhynchus tshawytscha. Although guidelines have been developed for DCC operations by...
Authors
Joseph E. Kirsch, James Peterson, Adam Duarte, Denise Goodman, Andrew Goodman, Sara Hugentobler, Mariah Meek, Russell Perry, Lori Smith, Jeffrey Stuart
Where the past meets the present: Connecting nitrogen from watersheds to streams through groundwater flowpaths Where the past meets the present: Connecting nitrogen from watersheds to streams through groundwater flowpaths
Groundwater discharge to streams is a nonpoint source of nitrogen (N) that confounds N mitigation efforts and represents a significant portion of the annual N loading to watersheds. However, we lack an understanding of where and how much groundwater N enters streams and watersheds. Nitrogen concentrations at the end of groundwater flowpaths are the culmination of biogeochemical and...
Authors
Eric M. Moore, Janet R. Barclay, Adam B. Haynes, Kevin E. Jackson, Alaina M. Bisson, Martin A. Briggs, Ashley M. Helton
A community convention for ecological forecasting: Output files and metadata version 1.0 A community convention for ecological forecasting: Output files and metadata version 1.0
This paper summarizes the open community conventions developed by the Ecological Forecasting Initiative (EFI) for the common formatting and archiving of ecological forecasts and the metadata associated with these forecasts. Such open standards are intended to promote interoperability and facilitate forecast communication, distribution, validation, and synthesis. For output files, we...
Authors
Michael C. Dietze, R. Quinn Thomas, Jody Peters, Carl Boettiger, Gerband Koren, Alexy N. Shiklomanov, Jaime Ashander