Publications
This list of publications includes peer-review journal articles, official USGS publications series, reports and more authored by scientists in the Ecosystems Mission Area. A database of all USGS publications, with advanced search features, can be accessed at the USGS Publications Warehouse.
Filter Total Items: 42704
Inactivation of viable surrogates for the select agents virulent Newcastle disease virus and highly pathogenic avian influenza virus using either commercial lysis buffer or heat Inactivation of viable surrogates for the select agents virulent Newcastle disease virus and highly pathogenic avian influenza virus using either commercial lysis buffer or heat
Introduction: Federal Select Agent Program regulations require laboratories to document a validated procedure for inactivating select agents prior to movement outside registered space. Avian influenza viruses and virulent Newcastle disease virus (vNDV) are cultured in chicken amnio-allantoic fluid (AAF), but the efficacy of commercial lysis buffers to inactivate viruses in protein-rich...
Authors
Katrina E. Alger, S. Ip, Jeffrey S. Hall, Sean Nashold, Katherine Richgels, Carrie Alison Smith
Ecological effects of establishing a 40-year oasis protection system in a Northwestern China Desert Ecological effects of establishing a 40-year oasis protection system in a Northwestern China Desert
Aims: Desertification around oasis areas is a serious problem in semi-arid and arid regions, which is expected to continue into the future due to a rapidly increasing human population. Oasis protection systems are created to reverse desertification by recovering degraded soil and vegetation properties and improving ecosystem services. Most research has focused on the short-term effects...
Authors
Guohua Wang, Seth M. Munson, Kailiang Yu, Ning Chen, Qianqian Gou
Arsenic-related oxidative stress in experimentally dosed wild great tit nestlings Arsenic-related oxidative stress in experimentally dosed wild great tit nestlings
Arsenic (As) is broadly distributed due to natural and anthropogenic sources, and it may cause adverse effects in birds. However, research on other elements (Pb, Hg and Cd) has been prioritized, resulting in scarce data on As exposure and related effects in wild birds. One of the mechanisms responsible for As toxicity is oxidative stress. Therefore, the aim of this study was to...
Authors
Pablo Sanchez-Virosta, Silvia Espin, Sandra Ruiz, Bineet Panda, Petteri Ilmonen, Sandra L. Schultz, Natalie Karouna-Renier, Antonio J. Garcia-Fernandez, Tapio Eeva
UAV-derived estimates of forest structure to inform ponderosa pine forest restoration UAV-derived estimates of forest structure to inform ponderosa pine forest restoration
Restoring forest ecosystems has become an increasingly high priority for land managers across the American West. Millions of hectares of forest are in need of drastic yet strategic reductions in density (e.g., basal area). Meeting the restoration and management goals requires quantifying metrics of vertical and horizontal forest structure, which has relied upon field‐based measurements...
Authors
Adam Belmonte, Temuulen T. Sankey, Joel A. Biederman, John B. Bradford, Scott J. Goetz, Thomas Kolb, Travis Woolley
Characterization of immunoglobulin light chain utilization and variable family diversity in rainbow trout Characterization of immunoglobulin light chain utilization and variable family diversity in rainbow trout
This study characterizes immunoglobulin light chain (IgL) expression and variable family usage in rainbow trout. IgL transcripts were generated by 5’ RACE from both immune and TNP-KLH immunized fish. Phylogenetic analysis revealed that the IgL variable regions clustered into seven different families: three kappa families (two newly described in this study), three sigma families, and a...
Authors
Katherine Rego, Eva Bengten, Melanie Wilson, John D. Hansen, Erin S Bromage
Exposure and potential effects of pesticides and pharmaceuticals in protected streams of the US National Park Service southeast Region Exposure and potential effects of pesticides and pharmaceuticals in protected streams of the US National Park Service southeast Region
Globally protected areas offer refugia for a broad range of taxa including threatened and endangered species. The United States National Park Service (NPS) manages public lands to preserve biodiversity, but increasing park visitation and development of surrounding landscapes increase exposure to and effects from bioactive contaminants. The risk (exposure and hazard) to NPS protected...
Authors
Paul M. Bradley, Kristin M. Romanok, Jeffrey R. Duncan, William Battaglin, Jimmy Clark, Michelle Hladik, Bradley Huffman, Luke Iwanowicz, Celeste A. Journey, Kelly Smalling
By
Ecosystems Mission Area, Water Resources Mission Area, Contaminant Biology, Environmental Health Program, Toxic Substances Hydrology, California Water Science Center, Colorado Water Science Center, Eastern Ecological Science Center, New Jersey Water Science Center, South Atlantic Water Science Center (SAWSC)
Traveling to thermal refuges during stressful temperatures leads to foraging constraints in a central-place forager Traveling to thermal refuges during stressful temperatures leads to foraging constraints in a central-place forager
Central-place foragers can be constrained by the distance between habitats. When an organism relies on a central place for thermal refuge, the distance to food resources can potentially constrain foraging behavior. We investigated the effect of distance between thermal refuges and forage patches of the cold-intolerant marine mammal, the Florida manatee (Trichechus manatus latirostris)...
Authors
Catherine G. Haase, Robert J. Fletcher, Daniel H. Slone, James P. Reid, Susan M. Butler
Response of tidal marsh vegetation to pulsed increases in flooding and nitrogen Response of tidal marsh vegetation to pulsed increases in flooding and nitrogen
Worldwide, human activities have modified hydrology and nutrient loading regimes in coastal wetlands. Understanding the interplay between these drivers and subsequent response of wetland plant communities is essential to informing wetland management and restoration efforts. Recent restoration strategies in Louisiana proposes to use sediment diversions from the Mississippi River to build...
Authors
Meagan M McCoy, Taylor M Sloey, Rebecca J. Howard, Mark W. Hester
Not all fuel‐reduction treatments degrade biocrusts: Herbicides cause mostly neutral to positive effects on cover of biocrusts Not all fuel‐reduction treatments degrade biocrusts: Herbicides cause mostly neutral to positive effects on cover of biocrusts
In response to increasing fire, fuel‐reduction treatments are being used to minimize large fire risk. Although biocrusts are associated with reduced cover of fire‐promoting, invasive grasses, the impact of fuel‐reduction treatments on biocrusts is poorly understood. We use data from a long‐term experiment, the Sagebrush Steppe Treatment Evaluation Project, testing the following fuel...
Authors
Lea A. Condon, Margaret L Gray
A comparison of the Trojan Y Chromosome strategy to harvesting models for eradication of nonnative species A comparison of the Trojan Y Chromosome strategy to harvesting models for eradication of nonnative species
The Trojan Y Chromosome strategy (TYC) is a promising eradication method for biological control of nonnative species. The strategy works by manipulating the sex ratio of a population through the introduction of supermales that guarantee male offspring. In the current study, we compare the TYC method with a pure harvesting strategy. We also analyze a hybrid harvesting model that mirrors...
Authors
Jingjing Lyu, Pamela J. Schofield, Kristen Reaver, Matthew Beauregard, Rana D. Parshad
Developing and optimizing shrub parameters representing sagebrush (Artemisia spp.) ecosystems in the Northern Great Basin using the Ecosystem Demography (EDv2.2) model Developing and optimizing shrub parameters representing sagebrush (Artemisia spp.) ecosystems in the Northern Great Basin using the Ecosystem Demography (EDv2.2) model
Ecosystem dynamic models are useful for understanding ecosystem characteristics over time and space because of their efficiency over direct field measurements and applicability to broad spatial extents. Their application, however, is challenging due to internal model uncertainties and complexities arising from distinct qualities of the ecosystems being analyzed. The sagebrush-steppe in...
Authors
Karun Pandit, Hamid Dasthi, Nancy Glenn, Alejandro Flores, Kaitlin C. Maguire, Douglas J. Shinneman, Gerald Flerchinger, Aaron Fellow
Generation of lamprey monoclonal antibodies (Lampribodies) using the phage display system Generation of lamprey monoclonal antibodies (Lampribodies) using the phage display system
The variable lymphocyte receptors (VLRs) consist of leucine rich repeats (LRRs) and comprise the humoral antibodies produced by lampreys and hagfishes. The diversity of the molecules is generated by stepwise genomic rearrangements of LRR cassettes dispersed throughout the VLRB locus. Previously, target-specific monovalent VLRB antibodies were isolated from sea lamprey larvae after...
Authors
Khan M A Hassan, John Hansen, Brantley R Herrin, Chris T Amemiya