I am an environmental microbiologist that uses molecular techniques and microbiology methods to study marine microbes, particularly the microbial ecology of tropical and deep-sea corals.
Dr. Kellogg joined the U.S. Geological Survey as a Mendenhall Fellow, characterizing the microbial communities in aerosolized African desert dust, beach sediments, seagrass beds and coral reefs. Currently, she leads the Coral Microbial Ecology Laboratory at the U.S. Geological Survey, studying the microbiomes and environments of tropical and cold-water corals.
Dr. Kellogg is active in shaping the direction of microbiome research in the U.S., having represented the Department of Interior (DOI) on the Federal Microbiome Interagency Working Group, the National Microbiome Data Collaborative, and serving as Subject Matter Expert to the White House Office of Science and Technology Policy rollout of the National Microbiome Initiative in 2016.
Science and Products
Mesophotic and Deep Benthic Communities: Coral Propagation Technique (CPT) Development Project
Through a collaborative effort with other federal agencies and academic and research institutions, the USGS is working to inform and enhance the protection and management of coral communities in mesophotic and deep benthic areas of the Gulf of Mexico.
Integrating Science and Management to Assist with the Response to Stony Coral Tissue Loss Disease
A USGS multi-disciplinary team will use laboratory and modeling approaches to investigate the cause of stony coral tissue loss disease.
USGS Role in DEEP SEARCH: Deep Sea Exploration to Advance Research on Coral, Canyon, and Cold-seep Habitats
USGS scientists are collaborating with multiple agencies to provide the esssential foundation for understanding these deep-sea environments.
By
Ecosystems Mission Area, Land Management Research Program, Pacific Coastal and Marine Science Center, St. Petersburg Coastal and Marine Science Center, Wetland and Aquatic Research Center , Woods Hole Coastal and Marine Science Center, Deep Sea Exploration, Mapping and Characterization, Gulf of Mexico
DISCOVRE: Diversity, Systematics and Connectivity of Vulnerable Reef Ecosystems
DISCOVRE (DIversity, Systematics and COnnectivity of Vulnerable Reef Ecosystems) is an integrated, multidisciplinary, international effort investigating the unique and fragile deep-sea coral environments from the microscopic level to the ecosystem level.
Microbial Processes on Reefs
The microbial community on coral reefs is generally underappreciated given the ubiquity, abundance, complexity, and formative role these prokaryotes serve in the metabolic and chemical processes on reefs. We use microbiological and metagenomic techniques to decipher the roles the microbial community are playing in processes such as coral disease, submarine groundwater discharge, calcification, and...
Lophelia Metagenome Extraction Protocol
Lophelia Metagenome Extraction Protocol
Coral Microbial Ecology
The coral microbial ecology group has an active research program identifying and characterizing the microbial associates of both tropical and cold-water (deep-sea) corals and their surrounding habitat. Current projects focus on coral disease dynamics, bacterial diversity, and using metagenomics to elucidate the functional roles of coral microbes.
DISCOVRE - Diversity, Systematics and Connectivity of Vulnerable Reef Ecosystems Project
This project uses amplicon sequencing, and functional microarrays to examine the microbiomes of several deep-sea coral species, with priority given to species that are also of interest to the population genetics group: Desmophyllum dianthus, Lophelia pertusa, Enallopsammia sp., and Acanthogorgia sp. The project also uses metagenomics to survey benthic habitats including coral mounds, cold seeps...
Coral Reef Ecosystem Studies (CREST)
The specific objectives of this project are to identify and describe the processes that are important in determining rates of coral-reef construction. How quickly the skeletons of calcifying organisms accumulate to form massive barrier-reef structure is determined by processes of both construction (how fast organisms grow and reproduce) and destruction (how fast reefs break down by mechanical...
Black-band disease in the Florida Keys
Photos of corals affected by black-band disease in the Florida Keys.
Coral Disease
We investigated coral disease processes and causes by characterizing microbial communities in diseased and healthy representatives of selected coral species both temporally and spatially by employing microarray technology. We tested the diagnostic potential of coral fluorescence for identifying disease-induced physiological stress.
Science and Products
- Science
Mesophotic and Deep Benthic Communities: Coral Propagation Technique (CPT) Development Project
Through a collaborative effort with other federal agencies and academic and research institutions, the USGS is working to inform and enhance the protection and management of coral communities in mesophotic and deep benthic areas of the Gulf of Mexico.Integrating Science and Management to Assist with the Response to Stony Coral Tissue Loss Disease
A USGS multi-disciplinary team will use laboratory and modeling approaches to investigate the cause of stony coral tissue loss disease.USGS Role in DEEP SEARCH: Deep Sea Exploration to Advance Research on Coral, Canyon, and Cold-seep Habitats
USGS scientists are collaborating with multiple agencies to provide the esssential foundation for understanding these deep-sea environments.ByEcosystems Mission Area, Land Management Research Program, Pacific Coastal and Marine Science Center, St. Petersburg Coastal and Marine Science Center, Wetland and Aquatic Research Center , Woods Hole Coastal and Marine Science Center, Deep Sea Exploration, Mapping and Characterization, Gulf of MexicoDISCOVRE: Diversity, Systematics and Connectivity of Vulnerable Reef Ecosystems
DISCOVRE (DIversity, Systematics and COnnectivity of Vulnerable Reef Ecosystems) is an integrated, multidisciplinary, international effort investigating the unique and fragile deep-sea coral environments from the microscopic level to the ecosystem level.Microbial Processes on Reefs
The microbial community on coral reefs is generally underappreciated given the ubiquity, abundance, complexity, and formative role these prokaryotes serve in the metabolic and chemical processes on reefs. We use microbiological and metagenomic techniques to decipher the roles the microbial community are playing in processes such as coral disease, submarine groundwater discharge, calcification, and...Lophelia Metagenome Extraction Protocol
Lophelia Metagenome Extraction ProtocolCoral Microbial Ecology
The coral microbial ecology group has an active research program identifying and characterizing the microbial associates of both tropical and cold-water (deep-sea) corals and their surrounding habitat. Current projects focus on coral disease dynamics, bacterial diversity, and using metagenomics to elucidate the functional roles of coral microbes.DISCOVRE - Diversity, Systematics and Connectivity of Vulnerable Reef Ecosystems Project
This project uses amplicon sequencing, and functional microarrays to examine the microbiomes of several deep-sea coral species, with priority given to species that are also of interest to the population genetics group: Desmophyllum dianthus, Lophelia pertusa, Enallopsammia sp., and Acanthogorgia sp. The project also uses metagenomics to survey benthic habitats including coral mounds, cold seeps...Coral Reef Ecosystem Studies (CREST)
The specific objectives of this project are to identify and describe the processes that are important in determining rates of coral-reef construction. How quickly the skeletons of calcifying organisms accumulate to form massive barrier-reef structure is determined by processes of both construction (how fast organisms grow and reproduce) and destruction (how fast reefs break down by mechanical...Black-band disease in the Florida Keys
Photos of corals affected by black-band disease in the Florida Keys.Coral Disease
We investigated coral disease processes and causes by characterizing microbial communities in diseased and healthy representatives of selected coral species both temporally and spatially by employing microarray technology. We tested the diagnostic potential of coral fluorescence for identifying disease-induced physiological stress. - Data
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