Timothy joined the USGS as a hydrologist in 1997 and now serves as the Deputy Program Coordinator for the Environmental Health Program (Contaminant Biology and Toxic Substances Hydrology) in the Ecosystems Mission Area.
Science and Products
Wastewater Surveillance
2020 CARES Act
Persistent Contaminant Threats Following Hurricane Sandy—Establishing Baselines and Assessing Impacts
Sediment-bound Contaminant Resiliency and Response (SCoRR) Strategy
Predictive analysis using chemical-gene interaction networks consistent with observed endocrine activity and mutagenicity of U.S. streams
The presence of antibiotic resistance genes in coastal soil and sediment samples from the eastern seaboard of the USA
Expanded target-chemical analysis reveals extensive mixed-organic-contaminant exposure in USA streams
Methods used to characterize the chemical composition and biological activity of environmental waters throughout the United States, 2012-14
Environmental implications of the use of sulfidic back-bay sediments for dune reconstruction — Lessons learned post Hurricane Sandy
Regional variability in bed-sediment concentrations of wastewater compounds, hormones and PAHs for portions of coastal New York and New Jersey impacted by hurricane Sandy
Resetting the bar: Establishing baselines for persistent contaminants after Hurricane Sandy in the coastal environments of New Jersey and New York, USA
Sediment chemistry and toxicity in Barnegat Bay, New Jersey: Pre- and post-Hurricane Sandy, 2012–13
Young of the year bluefish (Pomatomus saltatrix) as a bioindicator of estuarine health: Establishing a new baseline for persistent organic pollutants after Hurricane Sandy for selected estuaries in New Jersey and New York
Standard operating procedures for collection of soil and sediment samples for the Sediment-bound Contaminant Resiliency and Response (SCoRR) strategy pilot study
Strategy to evaluate persistent contaminant hazards resulting from sea-level rise and storm-derived disturbances—Study design and methodology for station prioritization
Chemical and ancillary data associated with bed sediment, young of year Bluefish (Pomatomus saltatrix) tissue, and mussel (Mytilus edulis and Geukensia demissa) tissue collected after Hurricane Sandy in bays and estuaries of New
Analytical inorganic chemistry results for samples collected for the Sediment-Bound Contaminant Resiliency and Response Strategy pilot study, northeastern United States, 2015
U.S. Geological Survey COVID-19 Wastewater Surveillance
USGS, as part of the National Wastewater Surveillance System, designed and implemented high-frequency sampling of wastewater across six states throughout September 2021, to support tracking of potential increases in COVID-19 infections in communities. COVID-19 viral loads were determined for each sample with the goal of delivering results to the CDC within three days of sampling.
Science and Products
- Science
Wastewater Surveillance
September 2021, wastewater sampling for COVID-19 was carried out by USGS across six states as part of the National Wastewater Surveillance System. Results of this work include the development of an effective high-frequency sampling approach to support rapid wastewater-based epidemiology and provided important and timely data to the Centers for Disease Control (CDC).2020 CARES Act
The Coronavirus Aid, Relief and Economic Security Act (CARES Act) was signed into law on March 27th, 2020, to aid response efforts and ease the economic impact of COVID-19. The Department of the Interior received funds to “prevent, prepare for, and response to coronavirus, domestically or internationally including, “biosurveillance of wildlife and environmental persistence studies.” The USGS...ByEcosystems Mission Area, Biological Threats and Invasive Species Research Program, Environmental Health Program, Eastern Ecological Science Center, Fort Collins Science Center, National Wildlife Health Center, Northern Rocky Mountain Science Center, Western Ecological Research Center (WERC), Western Fisheries Research CenterPersistent Contaminant Threats Following Hurricane Sandy—Establishing Baselines and Assessing Impacts
Potential long-term contaminant threats resulting from compromised infrastructure, beach erosion, and sediment disturbance were evaluated in the coastal environments of New Jersey and New York in the aftermath of Hurricane Sandy.Sediment-bound Contaminant Resiliency and Response (SCoRR) Strategy
The U.S. Geological Survey's Strategy to Evaluate Persistent Contaminant Hazards Resulting from Sea Level Rise and Storm-derived Disturbances SCoRR: Sediment-bound Contaminant Resiliency and Response Strategy Project Page Natural and anthropogenic contaminants, pathogens, and viruses are found in soils and sediments throughout the United States. Enhanced dispersion and concentration of these - Publications
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Predictive analysis using chemical-gene interaction networks consistent with observed endocrine activity and mutagenicity of U.S. streams
In a recent U.S. Geological Survey/U.S. Environmental Protection Agency study assessing >700 organic compounds in 38 streams, in vitro assays indicated generally low estrogen, androgen, and glucocorticoid receptor activities, but identified 13 surface waters with 17β estradiol equivalent (E2Eq) activities greater than the 1 ng/L level of concern for feminization of male fish. Among the 36 samplesAuthorsJason P. Berninger, David M. DeMarini, Sarah H. Warren, Jane Ellen Simmons, Vickie S. Wilson, Justin M. Conley, Mikayla D. Armstrong, Dana W. Kolpin, Kathryn Kuivila, Timothy J. Reilly, Kristin M. Romanok, Daniel L. Villeneuve, Paul M. Bradley, Luke R. IwanowiczByEcosystems Mission Area, Water Resources Mission Area, Contaminant Biology, Environmental Health Program, Toxic Substances Hydrology, Columbia Environmental Research Center, Eastern Ecological Science Center, New Jersey Water Science Center, Pennsylvania Water Science Center, South Atlantic Water Science Center (SAWSC)The presence of antibiotic resistance genes in coastal soil and sediment samples from the eastern seaboard of the USA
Infections from antibiotic resistant microorganisms are considered to be one of the greatest global public health challenges that result in huge annual economic losses. While genes that impart resistance to antibiotics (AbR) existed long before the discovery and use of antibiotics, anthropogenic uses of antibiotics in agriculture, domesticated animals, and humans are known to influence the prevaleAuthorsDale W. Griffin, William Benzel, Shawn C. Fisher, Michael J. Focazio, Luke R. Iwanowicz, Keith A. Loftin, Timothy J. Reilly, Daniel JonesByEcosystems Mission Area, Water Resources Mission Area, Contaminant Biology, Environmental Health Program, Toxic Substances Hydrology, Eastern Ecological Science Center, Geology, Geophysics, and Geochemistry Science Center, Geology, Minerals, Energy, and Geophysics Science Center, Kansas Water Science Center, New Jersey Water Science Center, New York Water Science Center, Pennsylvania Water Science Center, St. Petersburg Coastal and Marine Science Center, Utah Water Science CenterExpanded target-chemical analysis reveals extensive mixed-organic-contaminant exposure in USA streams
Surface water from 38 streams nationwide was assessed using 14 target-organic methods (719 compounds). Designed-bioactive anthropogenic contaminants (biocides, pharmaceuticals) comprised 57% of 406 organics detected at least once. The 10 most-frequently detected anthropogenic-organics included eight pesticides (desulfinylfipronil, AMPA, chlorpyrifos, dieldrin, metolachlor, atrazine, CIAT, glyphosaAuthorsPaul M. Bradley, Celeste A. Journey, Kristin M. Romanok, Larry B. Barber, Herbert T. Buxton, William T. Foreman, Edward T. Furlong, Susan T. Glassmeyer, Michelle L. Hladik, Luke R. Iwanowicz, Daniel Jones, Dana W. Kolpin, Kathryn M. Kuivila, Keith A. Loftin, Marc A. Mills, Michael T. Meyer, James L. Orlando, Timothy J. Reilly, Kelly L. Smalling, Daniel L. VilleneuveMethods used to characterize the chemical composition and biological activity of environmental waters throughout the United States, 2012-14
A vast array of chemical compounds are in wide commercial use in the United States, and the potential ecological and human-health effect of exposure to chemical mixtures has been identified as a high priority in environment health science. Awareness of the potential effects of low-level chemical exposures is rising. The U.S. Geological Survey, in cooperation with the U.S. Environmental ProtectionAuthorsKristin M. Romanok, Timothy J. Reilly, Larry B. Barber, J. Scott Boone, Herbert T. Buxton, William T. Foreman, Edward T. Furlong, Michelle Hladik, Luke R. Iwanowicz, Celeste A. Journey, Dana W. Kolpin, Kathryn Kuivila, Keith A. Loftin, Marc A. Mills, Michael T. Meyer, James L. Orlando, Kelly L. Smalling, Daniel L. Villeneuve, Paul M. BradleyEnvironmental implications of the use of sulfidic back-bay sediments for dune reconstruction — Lessons learned post Hurricane Sandy
Some barrier-island dunes damaged or destroyed by Hurricane Sandy's storm surges in October 2012 have been reconstructed using sediments dredged from back bays. These sand-, clay-, and iron sulfide-rich sediments were used to make berm-like cores for the reconstructed dunes, which were then covered by beach sand. In November 2013, we sampled and analyzed partially weathered materials collected froAuthorsGeoffrey S. Plumlee, William Benzel, Todd M. Hoefen, Philip L. Hageman, Suzette A. Morman, Timothy J. Reilly, Monique Adams, Cyrus J. Berry, Jeffrey Fischer, Irene FisherRegional variability in bed-sediment concentrations of wastewater compounds, hormones and PAHs for portions of coastal New York and New Jersey impacted by hurricane Sandy
Bed sediment samples from 79 coastal New York and New Jersey, USA sites were analyzed for 75 compounds including wastewater associated contaminants, PAHs, and other organic compounds to assess the post-Hurricane Sandy distribution of organic contaminants among six regions. These results provide the first assessment of wastewater compounds, hormones, and PAHs in bed sediment for this region. ConcenAuthorsPatrick J. Phillips, Cathy A Gibson, Shawn C. Fisher, Irene Fisher, Timothy J. Reilly, Kelly L. Smalling, Kristin M. Romanok, William T. Foreman, Rhiannon C. ReVello, Michael J. Focazio, Daniel JonesResetting the bar: Establishing baselines for persistent contaminants after Hurricane Sandy in the coastal environments of New Jersey and New York, USA
In the immediate aftermath of natural disasters, public health officials and other first responders engage in many activities to protect the public and ecosystems in the affected area. These activities include critical tasks designed to minimize adverse consequences resulting from chemical and microbial contaminant exposures, such as acute disease incidence and transmission. However, once these urAuthorsTimothy J. Reilly, Michael J. Focazio, Dale L. SimmonsSediment chemistry and toxicity in Barnegat Bay, New Jersey: Pre- and post-Hurricane Sandy, 2012–13
Hurricane Sandy made landfall in Barnegat Bay, October, 29, 2012, damaging shorelines and infrastructure. Estuarine sediment chemistry and toxicity were investigated before and after to evaluate potential environmental health impacts and to establish post-event baseline sediment-quality conditions. Trace element concentrations increased throughout Barnegat Bay up to two orders of magnitude, especiAuthorsKristin M. Romanok, Zoltan Szabo, Timothy J. Reilly, Zafer Defne, Neil K. GanjuYoung of the year bluefish (Pomatomus saltatrix) as a bioindicator of estuarine health: Establishing a new baseline for persistent organic pollutants after Hurricane Sandy for selected estuaries in New Jersey and New York
Atlantic coastal bays of the US are essential habitat for young of year bluefish (Pomatomus saltatrix). Their residence in these estuaries during critical life stages, high lipid content, and piscivory make bluefish an ideal bioindicator species for evaluating estuarine health. Individual whole fish from four estuaries impacted by Hurricane Sandy were collected in August 2013, analyzed for a suiteAuthorsKelly L. Smalling, Ashok D. Deshpande, Vicki S. Blazer, Bruce W Dockum, DeMond Timmons, Beth L. Sharack, Ronald J. Baker, Jennifer Samson, Timothy J. ReillyStandard operating procedures for collection of soil and sediment samples for the Sediment-bound Contaminant Resiliency and Response (SCoRR) strategy pilot study
An understanding of the effects on human and ecological health brought by major coastal storms or flooding events is typically limited because of a lack of regionally consistent baseline and trends data in locations proximal to potential contaminant sources and mitigation activities, sensitive ecosystems, and recreational facilities where exposures are probable. In an attempt to close this gap, thAuthorsShawn C. Fisher, Timothy J. Reilly, Daniel Jones, William Benzel, Dale W. Griffin, Keith A. Loftin, Luke R. Iwanowicz, Jonathan A. CohlStrategy to evaluate persistent contaminant hazards resulting from sea-level rise and storm-derived disturbances—Study design and methodology for station prioritization
Coastal communities are uniquely vulnerable to sea-level rise (SLR) and severe storms such as hurricanes. These events enhance the dispersion and concentration of natural and anthropogenic chemicals and pathogenic microorganisms that could adversely affect the health and resilience of coastal communities and ecosystems in coming years. The U.S. Geological Survey has developed a strategy to defineAuthorsTimothy J. Reilly, Daniel Jones, Michael J. Focazio, Kimberly C. Aquino, Chelsea L. Carbo, Erika E. Kaufhold, Elizabeth K. Zinecker, William Benzel, Shawn C. Fisher, Dale W. Griffin, Luke R. Iwanowicz, Keith A. Loftin, William B. SchillChemical and ancillary data associated with bed sediment, young of year Bluefish (Pomatomus saltatrix) tissue, and mussel (Mytilus edulis and Geukensia demissa) tissue collected after Hurricane Sandy in bays and estuaries of New
This report describes the methods and data associated with a reconnaissance study of young of year bluefish and mussel tissue samples as well as bed sediment collected as bluefish habitat indicators during August 2013–April 2014 in New Jersey and New York following Hurricane Sandy in October 2012. This study was funded by the Disaster Relief Appropriations Act of 2013 (PL 113-2) and was conductedAuthorsKelly L. Smalling, Ashok D. Deshpande, Vicki Blazer, Heather S. Galbraith, Bruce W. Dockum, Kristin M. Romanok, Kaitlyn Colella, Anna C. Deetz, Irene J. Fisher, Thomas E. Imbrigiotta, Beth Sharack, Lisa Summer, DeMond Timmons, John J. Trainor, Daniel Wieczorek, Jennifer Samson, Timothy J. Reilly, Michael J. Focazio - Data
Analytical inorganic chemistry results for samples collected for the Sediment-Bound Contaminant Resiliency and Response Strategy pilot study, northeastern United States, 2015
Coastal communities are uniquely vulnerable to sea-level rise (SLR) and severe storms such as hurricanes. These events enhance the dispersion and concentration of natural and anthropogenic chemicals and pathogenic microorganisms that could adversely affect the health and resilience of coastal communities and ecosystems in coming years. The U.S. Geological Survey has developed the Sediment-Bound Co - Multimedia
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U.S. Geological Survey COVID-19 Wastewater Surveillance
USGS, as part of the National Wastewater Surveillance System, designed and implemented high-frequency sampling of wastewater across six states throughout September 2021, to support tracking of potential increases in COVID-19 infections in communities. COVID-19 viral loads were determined for each sample with the goal of delivering results to the CDC within three days of sampling.