Publications
This list of publications includes peer-review journal articles, official USGS publications series, reports and more authored by scientists in the Ecosystems Mission Area. A database of all USGS publications, with advanced search features, can be accessed at the USGS Publications Warehouse.
Filter Total Items: 42878
Herring Disease Program II 19120111-E - 2019 Annual Report Herring Disease Program II 19120111-E - 2019 Annual Report
We will investigate fish health factors that may be contributing to the failed recovery of Pacific herring populations in Prince William Sound. Field samples will provide infection and disease prevalence data from Prince William Sound and Sitka Sound that will inform the ASA model, serological data that will indicate the prior exposure history and future susceptibility of herring to VHS...
Authors
Paul Hershberger, Maureen K. Purcell
Flea parasitism and host survival in a plague-relevant system: Theoretical and conservation implications Flea parasitism and host survival in a plague-relevant system: Theoretical and conservation implications
Plague is a bacterial zoonosis of mammalian hosts and flea vectors. The disease is capable of ravaging rodent populations and transforming ecosystems. Because plague mortality is likely to be predicted by flea parasitism, it is critical to understand vector dynamics. It has been hypothesized that paltry precipitation and reduced vegetative production predispose herbivorous rodents to
Authors
David A. Eads, Rachel C. Abbott, Dean E. Biggins, Tonie E. Rocke
2019 Status of the Lake Ontario Lower Trophic Levels 2019 Status of the Lake Ontario Lower Trophic Levels
Spring total phosphorus (TP) in 2019 was 3.2 µg/L (offshore) and 4.7 µg/L (nearshore), both all-time lows; however, there is no significant time trend in our data series (1995-2019 for nearshore; 2002-2019 for offshore). Apr/May – Oct mean TP concentrations were low at both nearshore and offshore locations (range, 3.7 – 6.5 µg/L). TP and SRP concentrations were not significantly...
Authors
Kristen T. Holeck, Lars G. Rudstam, Christopher Hotaling, Dave Lemon, Web Pearsall, Jana Lantry, Mike Connerton, Chris Legard, Steve LaPan, Zy Biesinger, Brian F. Lantry, Brian Weidel, Brian O’Malley
Greater sage-grouse chick killed by Great Basin gopher snake Greater sage-grouse chick killed by Great Basin gopher snake
Despite extensive range overlap between Great Basin gopher snakes (Pituophis catenifer deserticola) and Greater Sage-Grouse (Centrocercus urophasianus) within sagebrush ecosystems, there are few documented predator–prey interactions between these species. Although gopher snakes have been observed preying on nests of other prairie grouse, studies that used video-monitoring at sage-grouse...
Authors
Sarah E McIntire, Jordan C. Rabon, Peter S. Coates, Mark A. Ricca, Tracey N. Johnson
Nexus between wildfire, climate change and population growth in California Nexus between wildfire, climate change and population growth in California
Since the year 2000 California has experienced a remarkable upsurge in wildfires. Over five million hectares have burned in the last 20 years, which is double the area burned in the previous two decades. Much of this increase has been driven by large fires of more than 50,000 hectares that cause catastrophic losses of lives and property (Keeley and Syphard 2019). This increased fire...
Authors
Jon Keeley, Alexandra D. Syphard
The ODD protocol for describing agent-based and other simulation models: A second update to improve clarity, replication, and structural realism The ODD protocol for describing agent-based and other simulation models: A second update to improve clarity, replication, and structural realism
The Overview, Design concepts and Details (ODD) protocol for describing Individual- and Agent-Based Models (ABMs) is now widely accepted and used to document such models in journal articles. As a standardized document for providing a consistent, logical and readable account of the structure and dynamics of ABMs, some research groups also find it useful as a workflow for model design...
Authors
Volker Grimm, Steven F. Railsback, Christian Vincenot, Uta Berger, Cara Gallagher, Don DeAngelis, Bruce Edmonds, Jiaqi Ge, Jarl Giske, Jurgen Groeneveld, Alice S.A. Johnston, Alexander Miles, Jacob Nabe-Nielson, J. Gareth Polhill, Viktoriia Radchuk, Marie-Sophie Rohwader, Richard A. Stillman, Jan Theile, Daniel Ayllon
Final report: Southwestern Willow Flycatcher (Empidonax traillii extimus) and Western Yellow-billed Cuckoo (Coccyzus americanus occidentalis) surveys and habitat availability modeling on the Santa Clara River, California, 26 March 2020 Final report: Southwestern Willow Flycatcher (Empidonax traillii extimus) and Western Yellow-billed Cuckoo (Coccyzus americanus occidentalis) surveys and habitat availability modeling on the Santa Clara River, California, 26 March 2020
Our project aimed to conduct population surveys for Southwestern Willow Flycatcher (Empidonax trailii extimus; SWFL) and Yellow-billed Cuckoo (Coccyzus americanus; YBCU) in 2018 and 2019, apply existing habitat models to illustrate and predict past, current, and future habitat suitabilities for these two species, and update and standardize classification and mapping of riparian...
Authors
Linnea S. Hall, Bruce K. Orr, James Hatten, Adam Lambert, Tom L. Dudley
Multiple mechanisms determine the effect of warming on plant litter decomposition in a dryland Multiple mechanisms determine the effect of warming on plant litter decomposition in a dryland
In drylands, where soil fertility is typically low, plant litter decomposition provides particularly critical carbon and nitrogen inputs into soil. Although climate change is projected to increase the already large global extent of drylands, it is unknown how warmer temperatures will affect core ecosystem processes, such as plant litter decomposition, in these systems. To address this...
Authors
Peter F. Chuckran, Robin H. Reibold, Heather L. Throop, Sasha C. Reed
Transmitter effects on growth and survival of Forster’s tern chicks Transmitter effects on growth and survival of Forster’s tern chicks
Radio‐telemetry is a commonly used scientific technique that allows researchers to collect detailed movement, habitat use, and survival data of animals; however, evidence indicates that using telemetry can affect behavior and survival. Using multiple breeding colonies and years, we investigated the effects of attached radio‐transmitters on growth and survival of Forster's tern (Sterna...
Authors
Mark P. Herzog, Joshua T. Ackerman, C. Alex Hartman, Sarah H. Peterson
Climate-induced expansions of invasive species in the Pacific Northwest, North America: A synthesis of observations and projections Climate-induced expansions of invasive species in the Pacific Northwest, North America: A synthesis of observations and projections
Climate change may facilitate the expansion of non-native invasive species (NIS) in aquatic and terrestrial systems. However, empirical evidence remains scarce and poorly synthesized at scales necessary for effective management. We conducted a literature synthesis to assess the state of research on the observed and predicted effects of climate change on a suite of 398 aquatic and...
Authors
Jennifer Gervais, Ryan P. Kovach, Adam J. Sepulveda, Robert K. Al-Chokhachy, J. Joseph Giersch, Clint C. Muhlfeld
Movement-assisted localization from acoustic telemetry data Movement-assisted localization from acoustic telemetry data
Acoustic telemetry technologies are being increasingly deployed to study a variety of aquatic taxa including fishes, reptiles, and marine mammals. Large cooperative telemetry networks produce vast quantities of data useful in the study of movement, resource selection and species distribution. Efficient use of acoustic telemetry data requires estimation of acoustic source locations from...
Authors
Nathan J. Hostetter, J. Andrew Royle
High-throughput sequencing reveals distinct regional genetic structure among remaining populations of an endangered salt marsh plant in California High-throughput sequencing reveals distinct regional genetic structure among remaining populations of an endangered salt marsh plant in California
Conservation of rare species requires careful consideration to both preserve locally adapted traits and maintain genetic diversity, as species’ ranges fluctuate in response to a changing climate and habitat loss. Salt marsh systems in California have been highly modified and many salt marsh obligate species have undergone range reductions and habitat loss with concomitant losses of...
Authors
Elizabeth R. Milano, Margaret R Mulligan, Jon P. Rebman, Amy G. Vandergast