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Publications

This list of publications includes peer-review journal articles, official USGS publications series, reports and more authored by scientists in the Ecosystems Mission Area. A database of all USGS publications, with advanced search features, can be accessed at the USGS Publications Warehouse.  

Filter Total Items: 42707

Integrating broad‐scale data to assess demographic and climatic contributions to population change in a declining songbird Integrating broad‐scale data to assess demographic and climatic contributions to population change in a declining songbird

Climate variation and trends affect species distribution and abundance across large spatial extents. However, most studies that predict species response to climate are implemented at small spatial scales or are based on occurrence‐environment relationships that lack mechanistic detail. Here, we develop an integrated population model (IPM) for multi‐site count and capture‐recapture data...
Authors
Jim Saracco, Madeleine A. Rubenstein

Hydrogeologic characterization, groundwater chemistry, and vulnerability assessment, Ute Mountain Ute Reservation, Colorado and Utah Hydrogeologic characterization, groundwater chemistry, and vulnerability assessment, Ute Mountain Ute Reservation, Colorado and Utah

The U.S. Geological Survey, in cooperation with the Ute Mountain Ute Tribe (UMUT), initiated a study in 2016 to increase understanding of the hydrogeology and chemistry of groundwater within select areas of the Ute Mountain Ute Reservation (UMUR) in Colorado and Utah, identify vulnerabilities to the system and other natural resources, and outline information needs to aid in the...
Authors
Nancy J. Bauch, L. Rick Arnold

Genes in space: What Mojave desert tortoise genetics can tell us about landscape connectivity Genes in space: What Mojave desert tortoise genetics can tell us about landscape connectivity

Habitat loss and fragmentation in the Mojave Desert have been increasing, which can create barriers to movement and gene flow leading to decreased populations of native species. Disturbance and degradation of Mojave desert tortoise habitat includes linear features (e.g. highways, railways, and a network of dirt roads), urbanized areas, and their associated infrastructure, mining...
Authors
Kirsten E. Dutcher, Amy G. Vandergast, Todd Esque, Anna Mitelberg, Marjorie D Matocq, Jill S. Heaton, Ken E Nussear

A random forest approach for bounded outcome variables A random forest approach for bounded outcome variables

Random forests have become an established tool for classication and regres- sion, in particular in high-dimensional settings and in the presence of non-additive predictor-response relationships. For bounded outcome variables restricted to the unit interval, however, classical modeling approaches based on mean squared error loss may severely suer as they do not account for...
Authors
Leonie Weinhold, Matthias Schmid, Richard M. Mitchell, Kelly O. Maloney, Marvin N. Wright, Moritz Berger

A spatially explicit, empirical estimate of tree-based biological nitrogen fixation in forests of the United States A spatially explicit, empirical estimate of tree-based biological nitrogen fixation in forests of the United States

Quantifying human impacts on the nitrogen (N) cycle and investigating natural ecosystem N cycling depend on the magnitude of inputs from natural biological nitrogen fixation (BNF). Here, we present two bottom‐up approaches to quantify tree‐based symbiotic BNF based on forest inventory data across the coterminous United States and SE Alaska. For all major N‐fixing tree genera, we quantify...
Authors
Anika Staccone, Wenying Liao, Steven Perakis, Jana Compton, Christopher L. Clark, Duncan Menge

Sensitivity of warm water fishes and rainbow trout to selected contaminants Sensitivity of warm water fishes and rainbow trout to selected contaminants

Guidelines for developing water quality standards allow U.S. states to exclude toxicity data for the family Salmonidae (trout and salmon) when deriving guidelines for warm-water habitats. This practice reflects the belief that standards based on salmonid data may be overprotective of toxic effects on other fish taxa. In acute tests with six chemicals and eight fish species, the salmonid...
Authors
John M. Besser, Rebecca A. Dorman, Chris D. Ivey, Danielle M. Cleveland, Jeffery A. Steevens

Flea sharing among sympatric rodent hosts: implications for potential plague effects on a threatened sciurid Flea sharing among sympatric rodent hosts: implications for potential plague effects on a threatened sciurid

For vector-borne diseases, the abundance and competency of different vector species and their host preferences will impact the transfer of pathogens among hosts. Sylvatic plague is a lethal disease caused by the primarily flea-borne bacterium Yersinia pestis. Sylvatic plague was introduced into the western United States in the early 1900s and impacts many species of rodents. Plague may...
Authors
Amanda R. Goldberg, Courtney J. Conway, Dean E. Biggins

Co-occurrence and occupancy dynamics of mourning doves and Eurasian collared-doves Co-occurrence and occupancy dynamics of mourning doves and Eurasian collared-doves

Understanding how land cover and potential competition with invasive species shape patterns of occupancy, extirpation, and colonization of native species across a landscape can help target management for declining native populations. Mourning dove (Zenaida macroura) populations have declined throughout the United States from 1965–2015. The expansion of the Eurasian collared‐dove...
Authors
Adam W. Green, Helen Sofaer, David L Otis, Nicholas J. Van Lanen

Cryptic and extensive hybridization between ancient lineages of American crows Cryptic and extensive hybridization between ancient lineages of American crows

Most species and therefore most hybrid zones have historically been defined using phenotypic characters. However, both speciation and hybridization can occur with negligible morphological differentiation. Recently developed genomic tools provide the means to better understand cryptic speciation and hybridization. The Northwestern Crow (Corvus caurinus) and American Crow (Corvus...
Authors
David Slager, Kevin Epperly, Renee Ha, Sievert Rohwer, Christopher W. Woodall, Caroline R. Van Hemert, John Klicka

"Modified Unified Method" of carp capture "Modified Unified Method" of carp capture

Populations of Hypophthalmichthys molitrix (silver carp) and Hypophthalmichthys nobilis (bighead carp), (together referred to herein as “bigheaded carp”) have increased exponentially in the greater Mississippi River Basin. Detrimental effects on native fish and economically important fisheries have occurred where these invasive, filter-feeding fish are abundant. The Unified Method, a...
Authors
Duane Chapman

The influence of pre-fire growth patterns on post-fire tree mortality for common conifers in western U.S. parks The influence of pre-fire growth patterns on post-fire tree mortality for common conifers in western U.S. parks

Fire severity in forests is often defined in terms of post-fire tree mortality, yet the influences on tree mortality following fire are not fully understood. For trees that are not killed immediately by severe fire injury, pre-fire growth may partially predict post-fire mortality probabilities for conifers of the western U.S. Here, we consider the influence of multiple growth patterns on...
Authors
Phillip J. van Mantgem, Donald A. Falk, Emma C. Williams, Adrian J. Das, Nathan L. Stephenson

A weight-of-evidence approach for defining thermal sensitivity in a federally endangered species A weight-of-evidence approach for defining thermal sensitivity in a federally endangered species

1. Managing for threatened and endangered species under changing environmental conditions is a challenge faced by resource managers worldwide. Lack of basic knowledge of the biology and habitat requirements of these species can contribute to this difficulty, but is confounded by the limitations of working with rare (i.e. few individuals) species or unrefined methods for evaluating stress...
Authors
Heather Galbraith, Carrie J. Blakeslee, Daniel E. Spooner, William A. Lellis
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