Publications
Browse more than 160,000 publications authored by our scientists over the past 100+ year history of the USGS. Publications available are: USGS-authored journal articles, series reports, book chapters, other government publications, and more.
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Molecular detection and characterization of highly pathogenic H5N1 clade 2.3.4.4b avian influenza viruses among hunter-harvested wild birds provides evidence for three independent introductions into Alaska Molecular detection and characterization of highly pathogenic H5N1 clade 2.3.4.4b avian influenza viruses among hunter-harvested wild birds provides evidence for three independent introductions into Alaska
We detected and characterized highly pathogenic avian influenza viruses among hunter-harvested wild waterfowl inhabiting western Alaska during September–October 2022 using a molecular sequencing pipeline applied to RNA extracts derived directly from original swab samples. Genomic characterization of 10 H5 clade 2.3.4.4b avian influenza viruses detected with high confidence provided...
Authors
Andrew M. Ramey, Laura Celeste Scott, Christina Ahlstrom, Evan James Buck, Alison Williams, Mia Kim Torchetti, David E. Stallknecht, Rebecca L. Poulson
Plants as vectors for environmental prion transmission Plants as vectors for environmental prion transmission
Prions cause fatal neurodegenerative diseases and exhibit remarkable durability, which engenders a wide array of potential exposure scenarios. In chronic wasting disease of deer, elk, moose, and reindeer and in scrapie of sheep and goats, prions are transmitted via environmental routes and the ability of plants to accumulate and subsequently transmit prions has been hypothesized, but not
Authors
Christina M. Carlson, Samuel Thomas, Matthew W. Keating, Nicole M. Gibbs, Haeyoon Chang, Jamie K. Wiepz, Annabel G. Austin, Jay R. Schneider, Christopher J. Johnson, Joel A. Pedersen
Characterizing performance of freshwater wetland methane models across time scales at FLUXNET-CH4 sites using wavelet analyses Characterizing performance of freshwater wetland methane models across time scales at FLUXNET-CH4 sites using wavelet analyses
Process-based land surface models are important tools for estimating global wetland methane (CH4) emissions and projecting their behavior across space and time. So far there are no performance assessments of model responses to drivers at multiple time scales. In this study, we apply wavelet analysis to identify the dominant time scales contributing to model uncertainty in the frequency...
Authors
Zhen Zhang, Sheel Bansal, Kuang-Yu Chang, Etienne Fluet-Chouinard, Kyle B. Delwiche, Mathias Goeckede, Adrian Gustafson, Sara Knox, Antii Leppanen, Licheng Liu, Jinxun Liu, Avni Malhotra, Tiina Markkanen, Gavin McNicol, Joe R. Melton, Paul A Miller, Changhui Peng, Maarit Raivonen, William Riley, Oliver Sonnentag, Tuula Aalto, Rodrigo Vargas, Wenxin Zhang, Qing Zhu, Qiuan Zhu, Qianlai Zhuang, Lisamarie Windham-Myers, Robert B. Jackson, Benjamin Poulter
Kinematic evolution of a large paraglacial landslide in the Barry Arm fjord of Alaska Kinematic evolution of a large paraglacial landslide in the Barry Arm fjord of Alaska
Our warming climate is adversely affecting cryospheric landscapes via glacial retreat, permafrost degradation, and associated slope destabilization. In Prince William Sound, Alaska, the rapid retreat of Barry Glacier has destabilized the slopes flanking the glacier, resulting in numerous landslides. The largest of these landslides (∼500 Mm3 in volume) is more than 2 km wide and has the...
Authors
Lauren N. Schaefer, Jeffrey A. Coe, Katreen Wikstrom Jones, Brian D. Collins, Dennis M. Staley, Michael E. West, Ezgi Karasozen, Charles Prentice-James Miles, Gabriel J. Wolken, Ronald P. Daanan, Kelli Wadsworth Baxstrom
Acclimation capacity of critical thermal maximum varies among populations: Consequences for estimates of vulnerability Acclimation capacity of critical thermal maximum varies among populations: Consequences for estimates of vulnerability
Adaptive plasticity in thermal tolerance traits may buffer organisms against changing temperatures, making such responses of particular interest in the face of global climate change. Although population variation is integral to the evolvability of this trait, many studies inferring proxies of physiological vulnerability from thermal tolerance traits extrapolate data from one or a few...
Authors
Amanda S. Cicchino, Alisha A. Shah, Brenna R. Forester, Jason Dunham, N. LeRoy Poff, Cameron K. Ghalambor, W. Chris Funk
Expanding our view of the cold-water coral niche and accounting of the ecosystem services of the reef habitat Expanding our view of the cold-water coral niche and accounting of the ecosystem services of the reef habitat
Coral reefs are iconic ecosystems that support diverse, productive communities in both shallow and deep waters. However, our incomplete knowledge of cold-water coral (CWC) niche space limits our understanding of their distribution and precludes a complete accounting of the ecosystem services they provide. Here, we present the results of recent surveys of the CWC mound province on the...
Authors
Erik E. Cordes, Amanda Demopoulos, Andrew J. Davies, Ryan Gasbarro, Alexandria C. Rhoads, Elizabeth Loebeker, Derek Sowers, Jason Chaytor, Cheryl Morrison, Alexis M. Weinnig, Sandra Brooke, Jay J. Lunden, Furu Mienis, Samantha B. Joye, Andrea M. Quattrini, Tracey T. Sutton, Catherine S. McFadden, Jill R. Bourque, Jennifer McClain Counts, Brian D. Andrews, Melissa J. Betters, Peter J. Etnoyer, Gary A. Wolff, Bernie B. Bernard, James M. Brooks, Michael K. Rasser, Caitlin Adams
Rising wildfire risk to houses in the United States, especially in grasslands and shrublands Rising wildfire risk to houses in the United States, especially in grasslands and shrublands
Wildfire risks to homes are increasing, especially in the wildland-urban interface (WUI), where wildland vegetation and houses are in close proximity. Notably, we found that more houses are exposed to and destroyed by grassland and shrubland fires than by forest fires in the United States. Destruction was more likely in forest fires, but they burned less WUI. The number of houses within...
Authors
V.C. Radeloff, M.H. Mockrin, D. Helmers, A. Ron Carlson, Todd Hawbaker, S. Martinuzzi, F. Schug, P.M. Alexandre, A.H. Kramer, A.M. Pidgeon
Plant size, latitude, and phylogeny explain within-population variability in herbivory Plant size, latitude, and phylogeny explain within-population variability in herbivory
Interactions between plants and herbivores are central in most ecosystems, but their strength is highly variable. The amount of variability within a system is thought to influence most aspects of plant-herbivore biology, from ecological stability to plant defense evolution. Our understanding of what influences variability, however, is limited by sparse data. We collected standardized...
Authors
Moria Robinson, Karen C Abbott, Warwick J. Allen, Janete Andrade, Diego Angulo, Diego Anjos, Daniel Anstett, Robert Bagchi, Sumanta Bagchi, Milton Barbosa, Sarah Barrett, Carina Baskett, Eyal Ben-Simchon, Kathryn Bloodworth, Judith L. Bronstein, Emilio Bruna, Yvonne Buckley, Karin Burghardt, Carlos Bustos-Segura, N. Ivalu Cacho, Eduardo Soares Calixto, Raquel Carvalho, Bastien Castagneyrol, Mariana Chiuffo, Damla Cinoğlu, Elizeth Cinto Mejia, Marina Cock, Rodrigo Cogni, Olivia Cope, Tatiana Cornelissen, Dezirea Cortez, David Crowder, Caroline Dallstream, Wesley Dattilo, Julien Davis, Romina Dimarco, Haley Dole, Lee Dyer, Ikponmwosa Egbon, Afure Ejomah, Bret D Elderd, Maria-Jose Endara, Micky D. Eubanks, Susan Everingham, Keiko Farah, Rafael de Paiva Farias, Geraldo Fernandes, Marco Ferrante, Alain Finn, Grace Florjancic, Matthew L. Forister, Quinn Fox, Enric Frago, Filipe M. Franca, Abigail Getman-Pickering, Zoe Getman-Pickering, Ben Gooden, Martin M. Gossner, Keri Greig, Sofia Gripenberg, Ronny Groenteman, Patrick Grof-Tisza, Nora Haack, Lisa Hahn, Philip Hahn, Shiekh Marifatul Haq, Justus Hennecke, Sara Hermann, Liza M. Holeski, Matthew Hutchinson, Brian Inouye, Eleanor Jackson, Shinnosuke Kagiya, Michael Kalwajtys, Richard Karban, Rupesh Kariyat, Tamar Keasar, Monica Kersch-Becker, Heather Kharouba, Tania Kim, Duncan Kimuyu, Jennifer Kluse, Sally E. Koerner, Kimberly Komatsu, Sushmita Krishnan, Miika Laihonen, Lucas Lamelas-Lopez, Michael LaScaleia, Nicolas Lecomte, Carlos Lehn, Xiaofei Li, Richard L Lindroth, Eric LoPresti, Maria Losada, Allison M Louthan, Victoria Luizzi, Joshua Lynn, Nicholas Lyon, Lais Maia, Renata Maia, Tosca Mannall, Bruce Martin, Tara Massad, Andrew McCall, Kelsey McGurrin, Andrew Merwin, Zarluis Mijango-Ramos, Charlotte Mills, Angela Moles, Christopher Moore, Colin Morrison, Moleseng Moshobane, Anne Muola, Ryosuke Nakadai, Kazuhide Nakajima, Samuel Novais, Charlee Ogbebor, Haruna Ohsaki, Vincent S. Pan, Nicholas Pardikes, Narayanaswamy Parthasarathy, Rohit Pawar, Quentin Paynter, Ian Pearse, Rachel Penczykowski, Adam Pepi, Cassio Pereira, Shyam Phartyal, Frida I. Piper, Katja Poveda, Elizabeth Pringle, Javier Puy, Teresa Quijano, Carolina Quintero, Sergio Rasmann, Christoph Rosche, Leah Rosenheim, Justin B. Runyon, Asaf Sadeh, Yuzu Sakata, Danielle Salcido, Cristian Salgado-Luarte, Braulio Santos, Yuval Sapir, Yamila Sasal, Yasuhiro Sato, Manasi Sawant, Hayley Schroeder, Isabell Schumann, Michal Segoli, Hila Segre, Oren Shelef, Naoto Shinohara, Rachit Pratap Singh, David Smith, Mar Sobral, Gisela Stotz, Ayco Tack, Mandeep Tayal, John Tooker, Daniel Torrico-Bazoberry, Kevin Tougeron, Nora Underwood, Shunsuke Utsumi, Osariyekemwen Uyi, Jessica Vaca-Uribe, Anu Valtonen, Laura van Dijk, Vigdis Vandvik, Jesus Villellas, Lauren Waller, Marjorie G. Weber, William C. Wetzel, Susan Whitehead, Akira Yamawo, Samantha Yim, Luke Zehr, Zhiwei Zhong
Isotopic niche partitioning in a multi-species assemblage Isotopic niche partitioning in a multi-species assemblage
Multi-species assemblages can help identify key resources in their habitat by evaluating how they are partitioning their resources. Here we used the isotopic niche of loggerhead, Kemp’s ridley, and green sea turtles to assess their ecological niche within a Gulf of Mexico bay. Additionally, we assessed temporal and size-class variation in their diets by comparing the δ13C and δ15N values...
Authors
Carson L. Arends, Hannah B. Vander Zanden, Margaret Lamont
Steady-state forms of channel profiles shaped by debris flow and fluvial processes Steady-state forms of channel profiles shaped by debris flow and fluvial processes
Debris flows regularly traverse bedrock channels that dissect steep landscapes, but our understanding of bedrock erosion by debris flows and their impact on steepland morphology is still rudimentary. Quantitative models of steep bedrock channel networks are based on geomorphic transport laws designed to represent erosion by water-dominated flows. To quantify the impact of debris flow...
Authors
Luke A. McGuire, Scott W. McCoy, Odin Marc, William Struble, Katherine R. Barnhart
Expanding our view of the cold-water coral niche and accounting of the ecosystem services of the reef habitat Expanding our view of the cold-water coral niche and accounting of the ecosystem services of the reef habitat
Coral reefs are iconic ecosystems that support diverse, productive communities in both shallow and deep waters. However, our incomplete knowledge of cold-water coral (CWC) niche space limits our understanding of their distribution and precludes a complete accounting of the ecosystem services they provide. Here, we present the results of recent surveys of the CWC mound province on the...
Authors
Erick E. Cordes, Amanda Demopoulos, Andrew Davies, Ryan Gasbarro, Alexandria Rhoads, Elizabeth Lobecker, Dereck Sowers, Jason Chaytor, Cheryl Morrison, Alexis Marie Weinnig, Sandra Brooke, Jay J. Lunden, Furu Mienis, Samantha B. Joye, Andrea M. Quattrini, Tracey Sutton, Catherine McFadden, Jill R. Bourque, Jennifer McClain Counts, Brian D. Andrews, Melissa Betters, Peter Etnoyer, Gary Wolff, Bernie Bernard, James Brooks, Michael Rasser, Caitlin Adams
Assessing the added value of antecedent streamflow alteration information in modeling stream biological condition Assessing the added value of antecedent streamflow alteration information in modeling stream biological condition
In stream systems, disentangling relationships between biology and flow and subsequent prediction of these relationships to unsampled streams is a common objective of large-scale ecological modeling. Often, streamflow metrics are derived from aggregating continuous streamflow records available at a subset of stream gages into long-term flow regime descriptors. Despite demonstrated value
Authors
Taylor Woods, Ken Eng, Daren M. Carlisle, Matthew J. Cashman, Michael R. Meador, Karen R. Ryberg, Kelly O. Maloney