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Publications

Browse more than 160,000 publications authored by our scientists over the past 100+ year history of the USGS.  Publications available are: USGS-authored journal articles, series reports, book chapters, other government publications, and more.

Filter Total Items: 175056

Assessment of antibiotic resistance genes in Caribbean corals, including those treated with amoxicillin Assessment of antibiotic resistance genes in Caribbean corals, including those treated with amoxicillin

The decimation of reefs from stony coral tissue loss disease prompted the use of a topical amoxicillin treatment to prevent coral mortality. Application of this treatment led to concerns about unintentional impacts such as potential alteration of the coral microbiome and possible spread of antibiotic resistance. We used three different methodologies—microbial RNA sequencing, 16S rRNA...
Authors
Karen L. Neely, Christina A. Kellogg, Julie Jenice Voelschow, Allison R. Cauvin, Sydney A.M. Reed, Ewelina Rubin, Julie L. Meyer

Breeding shorebird surveys in the Arctic National Wildlife Refuge, Alaska, suggest population declines over two decades for most species Breeding shorebird surveys in the Arctic National Wildlife Refuge, Alaska, suggest population declines over two decades for most species

Shorebird populations are declining globally but it generally remains unclear how those declines translate to changes at the regional scale. We conducted the first longitudinal surveys of breeding shorebirds in Alaska under the Program for Regional and International Shorebird Monitoring (PRISM), resurveying the Coastal Plain (1002 Area) of the Arctic National Wildlife Refuge (NWR) in...
Authors
Stephen C. Brown, James E. Lyons, Sarah T. Saalfeld, Shiloh Schulte, Christopher J. Latty, Metta McGarvey, Lindall R. Kidd, Kirsti L.K. Carr, Richard B. Lanctot

Revisiting chlorophyll a thresholds for San Francisco Bay: Insights from observations of phytoplankton molecular abundance Revisiting chlorophyll a thresholds for San Francisco Bay: Insights from observations of phytoplankton molecular abundance

Harmful Algal Blooms (HABs) are a hazard for coastal environments worldwide; identifying screening thresholds of chlorophyll-a (chl-a) associated with increased risk of HABs is a management priority. Molecular surveillance of coastal phytoplankton and bivalve biotoxins could be used to link chl-a with HAB risk, but requires an understanding of whether the HAB risks increase uniformly as...
Authors
Daniel Killam, Keith Bouma-Gregson, Martha Sutula, Raphael Kudela, James Hagy, Stephanie Anderson, David Senn

Bathymetric and velocimetric surveys at highway bridges crossing the Missouri River near Kansas City, Missouri, August 8–9, 2023 Bathymetric and velocimetric surveys at highway bridges crossing the Missouri River near Kansas City, Missouri, August 8–9, 2023

Bathymetric and velocimetric data were collected by the U.S. Geological Survey, in cooperation with the Missouri Department of Transportation, near 8 bridge crossings of the Missouri River near Kansas City, Missouri, on August 8–9, 2023. A multibeam echosounder mapping system was used to obtain channel- bed elevations for river reaches that extended about 1,550 to 1,640 feet...
Authors
Richard J. Huizinga, Benjamin C. Rivers

Habitat-based predictions of bridle shiner (Notropis bifrenatus) in the northeastern U.S. Habitat-based predictions of bridle shiner (Notropis bifrenatus) in the northeastern U.S.

We sought to assess bridle shiner (Notropis bifrenatus) habitat associations at local and regional scales across southern Maine and New Hampshire. We used local habitat data at 95 Maine sites to predict occupancy with classification and regression trees (CART). We then used ensemble species distribution models (SDMs) to model the historical (1898–2008) and current (2009–2022) ranges of...
Authors
Lara S. Katz, Stephen M. Coghlan, Matthew A. Carpenter, Michael T. Kinnison, Joseph D. Zydlewski

Inference of pattern-based geological CO2 sequestration and oil recovery potential in a commingled main pay and residual oil zone CO2-EOR flood Inference of pattern-based geological CO2 sequestration and oil recovery potential in a commingled main pay and residual oil zone CO2-EOR flood

Several detailed studies have shown that residual oil zones (ROZs) can present significant resources for additional hydrocarbon recovery as well as subsurface carbon dioxide (CO2) sequestration via enhanced oil recovery by injecting CO2 (CO2-EOR). Field development strategies included new wells drilled dedicated to main pay zones (MPZ) and ROZs, or existing wells in MPZs deepened to ROZs...
Authors
C. Ozgen Karacan, Emil Attanasi, Sean T. Brennan, Peter D. Warwick

Groundwater quality near an oil field in a stream-dominated recharge setting, California, USA Groundwater quality near an oil field in a stream-dominated recharge setting, California, USA

Alluvial valley aquifers are important sources of water supply in many areas but effects of co-located oil and gas development on these resources have not been widely reported, especially in settings where recharge is dominated by stream infiltration. Interpreting the presence of geochemical indicators in the context of hydrology, geology, and other factors provides a more complete...
Authors
Jennifer S. Stanton, Michael J. Stephens, Matthew K. Landon, David H. Shimabukuro, Andrew G. Hunt, Justin T. Kulongoski, Isabelle M. Cozzarelli, Theron A. Sowers

Monitoring changes in Landsat thermal features in urban and non-urban interfaces from 1986 to 2023 in two international urban centers: Implications for climate and global issues Monitoring changes in Landsat thermal features in urban and non-urban interfaces from 1986 to 2023 in two international urban centers: Implications for climate and global issues

Rapid urbanization is reshaping thermal environments worldwide, with the strongest impacts occurring at the interface between urban and non-urban areas. Impervious surfaces, as key indicators of urban expansion, are critical for monitoring urban growth and assessing surface urban heat island (SUHI) effects. Land use and land cover change (LULCC) provides an essential link between urban...
Authors
Hua Shi, Christopher P. Barber, Kristi L. Sayler, Kelcy Smith, Reza Hussain

Tracking baseflow supply dynamics using SWOT data from small groundwater dominated lakes Tracking baseflow supply dynamics using SWOT data from small groundwater dominated lakes

In situ surface-water monitoring strategies are biased towards larger perennial streams and lakes and are generally not designed to track mechanisms of baseflow supply contributed by the dynamic storage of aquifers. Additionally, small (
Authors
Martin A. Briggs, Merritt Elizabeth Harlan, David M. Rey, Danielle K. Hare, Denis R. LeBlanc, David F. Boutt, Michael N. Gooseff

Hierarchical mixture models and high-resolution monitoring data can inform siting and operational strategies to mitigate bat fatalities at wind turbines Hierarchical mixture models and high-resolution monitoring data can inform siting and operational strategies to mitigate bat fatalities at wind turbines

Bats provide critical ecosystem services, but bat fatalities due to wind energy development may imperil some bat populations. Statistical models are used to estimate the total fatalities that occur based on carcasses observed during monitoring surveys. Current models often estimate fatalities aggregated across species, time, and/or turbines, but fall short of reliably informing siting...
Authors
Charles J. Labuzzetta, Arnold (Contractor) Johnsen, Amber Andress, Teresa Bohner, Alejandro Grajal-Puche, Megan Seymour, Bethany R. Straw, Wayne E. Thogmartin, Bradley James Udell, Ashton M. Wiens, James Diffendorfer

Assessment of undiscovered conventional oil and gas resources in the Santos Basin, Campos Basin, and Espírito Santo Basin provinces of Brazil, 2024 Assessment of undiscovered conventional oil and gas resources in the Santos Basin, Campos Basin, and Espírito Santo Basin provinces of Brazil, 2024

Using a geology-based assessment methodology, the U.S. Geological Survey estimated undiscovered, technically recoverable mean conventional resources of 10.4 billion barrels of oil and 53.3 trillion cubic feet of gas in the Santos Basin, Campos Basin, and Espírito Santo Basin provinces of Brazil.
Authors
Christopher J. Schenk, Sarah E. Gelman, Jane S. Hearon, Tracey J. Mercier, Phuong A. Le, Andrea D. Cicero, Benjamin G. Johnson, Jenny H. Lagesse, Heidi M. Leathers-Miller

Suspended-sediment and phosphorus response in a fire-affected central Montana headwater catchment Suspended-sediment and phosphorus response in a fire-affected central Montana headwater catchment

Purpose Eutrophication and nuisance filamentous algal blooms (i.e. Cladophora) are increasingly common occurrences throughout much of the western United States. Wildfire may be contributing to the frequency and magnitude of algal blooms through excess sediment and nutrient loading to streams and rivers. Our objective was to evaluate the effects the 2021 Woods Creek Fire had on sediment...
Authors
Gregory D. Clark, Michael W. Suplee, Haylie M. Brown, Molly A. Moloney, Rodney R. Caldwell
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