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Publications

This list of publications includes peer-review journal articles, official USGS publications series, reports and more authored by scientists in the Ecosystems Mission Area. A database of all USGS publications, with advanced search features, can be accessed at the USGS Publications Warehouse.  

Filter Total Items: 42707

The relative importance of intrinsic and extrinsic drivers to population growth vary among local populations of Greater Sage-Grouse: An integrated population modeling approach The relative importance of intrinsic and extrinsic drivers to population growth vary among local populations of Greater Sage-Grouse: An integrated population modeling approach

Consideration of ecological scale is fundamental to understanding and managing avian population growth and decline. Empirically driven models for population dynamics and demographic processes across multiple spatial scales can be powerful tools to help guide conservation actions. Integrated population models (IPMs) provide a framework for better parameter estimation by unifying multiple...
Authors
Peter S. Coates, Brian G. Prochazka, Mark A. Ricca, Brian J. Halstead, Michael L. Casazza, Erik J. Blomberg, Brianne E. Brussee, Lief Wiechman, Joel Tebbenkamp, Scott C. Gardner, Kerry P. Reese

Population genomic analysis suggests strong influence of river network on spatial distribution of genetic variation in invasive saltcedar across the southwestern United States Population genomic analysis suggests strong influence of river network on spatial distribution of genetic variation in invasive saltcedar across the southwestern United States

Understanding the complex influences of landscape and anthropogenic elements that shape the population genetic structure of invasive species provides insight into patterns of colonization and spread. The application of landscape genomics techniques to these questions may offer detailed, previously undocumented insights into factors influencing species invasions. We investigated the...
Authors
Soo-Rang Lee, Yeong-Seok Jo, Chan-Ho Park, Jonathan M. Friedman, Matthew S. Olson

Molecular testing of adult Pacific salmon and trout (Oncorhynchus spp.) for several RNA viruses demonstrates widespread distribution of piscine orthoreovirus in Alaska and Washington Molecular testing of adult Pacific salmon and trout (Oncorhynchus spp.) for several RNA viruses demonstrates widespread distribution of piscine orthoreovirus in Alaska and Washington

This research was initiated in conjunction with a systematic, multiagency surveillance effort in the United States (U.S.) in response to reported findings of infectious salmon anaemia virus (ISAV) RNA in British Columbia, Canada. In the systematic surveillance study reported in a companion paper, tissues from various salmonids taken from Washington and Alaska were surveyed for ISAV RNA...
Authors
Maureen K. Purcell, Rachel L. Thompson, Joy Evered, John Kerwin, Ted R. Meyers, Bruce Stewart, James Winton

Hydroclimatology of the Missouri River basin Hydroclimatology of the Missouri River basin

Despite the importance of the Missouri River for navigation, recreation, habitat, hydroelectric power, and agriculture, relatively little is known about the basic hydroclimatology of the Missouri River basin (MRB). This is of particular concern given the droughts and floods that have occurred over the past several decades and the potential future exacerbation of these extremes by climate...
Authors
Erika K. Wise, Connie A. Woodhouse, Gregory J. McCabe, Gregory T. Pederson, Jeannine-Marie St. Jacques

Occupancy modeling of autonomously recorded vocalizations to predict distribution of rallids in tidal wetlands Occupancy modeling of autonomously recorded vocalizations to predict distribution of rallids in tidal wetlands

Conservation and management for a species requires reliable information on its status, distribution, and habitat use. We identified occupancy and distributions of king (Rallus elegans) and clapper (R. crepitans) rail populations in marsh complexes along the Pamunkey and Mattaponi Rivers in Virginia, USA by modeling data on vocalizations recorded from autonomous recording units (ARUs)...
Authors
Lydia L. Stiffler, James T. Anderson, Todd E. Katzner

A systematic surveillance programme for infectious salmon anaemia virus supports its absence in the Pacific Northwest of the United States A systematic surveillance programme for infectious salmon anaemia virus supports its absence in the Pacific Northwest of the United States

In response to reported findings of infectious salmon anaemia virus (ISAV) in British Columbia (BC), Canada, in 2011, U.S. national, state and tribal fisheries managers and fish health specialists developed and implemented a collaborative ISAV surveillance plan for the Pacific Northwest region of the United States. Accordingly, over a 3-1/2-year period, 4,962 salmonids were sampled and
Authors
Lori L. Gustafson, Lynn H. Creekmore, Kevin R. Snekvik, Jayde A. Ferguson, Janet V. Warg, Marilyn Blair, Theodore R. Meyers, Bruce Stewart, Kenneth I. Warheit, John Kerwin, Andrew E. Goodwin, Linda D. Rhodes, Janet E. Whaley, Maureen K. Purcell, Collette Bentz, Desiree Shasa, Joel Bader, James R. Winton

Investigating runoff efficiency in upper Colorado River streamflow over past centuries Investigating runoff efficiency in upper Colorado River streamflow over past centuries

With increasing concerns about the impact of warming temperatures on water resources, more attention is being paid to the relationship between runoff and precipitation, or runoff efficiency. Temperature is a key influence on Colorado River runoff efficiency, and warming temperatures are projected to reduce runoff efficiency. Here, we investigate the nature of runoff efficiency in the...
Authors
Connie A. Woodhouse, Gregory T. Pederson

Accommodating state shifts within the conceptual framework of the wetland continuum Accommodating state shifts within the conceptual framework of the wetland continuum

The Wetland Continuum is a conceptual framework that facilitates the interpretation of biological studies of wetland ecosystems. Recently summarized evidence documenting how a multi-decadal wet period has influenced aspects of wetland, lake and stream systems in the southern prairie-pothole region of North America has revealed the potential for wetlands to shift among alternate states...
Authors
David M. Mushet, Owen P. McKenna, James W. LaBaugh, Ned H. Euliss, Donald O. Rosenberry

Semi-arid grassland bird responses to patch-burn grazing and drought Semi-arid grassland bird responses to patch-burn grazing and drought

As grassland birds of central North America experience steep population declines with changes in land use, management of remaining tracts becomes increasingly important for population viability. The integrated use of fire and grazing may enhance vegetation heterogeneity and diversity in breeding birds, but the subsequent effects on reproduction are unknown. We examined the influence of...
Authors
Susan K. Skagen, David J. Augustine, Justin D. Derner

Can data from disparate long-term fish monitoring programs be used to increase our understanding of regional and continental trends in large river assemblages? Can data from disparate long-term fish monitoring programs be used to increase our understanding of regional and continental trends in large river assemblages?

Understanding trends in the diverse resources provided by large rivers will help balance tradeoffs among stakeholders and inform strategies to mitigate the effects of landscape scale stressors such as climate change and invasive species. Absent a cohesive coordinated effort to assess trends in important large river resources, a logical starting point is to assess our ability to draw...
Authors
Timothy D. Counihan, Ian R. Waite, Andrew F. Casper, David L. Ward, Jennifer S. Sauer, Elise R. Irwin, Colin G. Chapman, Brian Ickes, Craig P. Paukert, John J. Kosovich, Jennifer M. Bayer

Development and validation of quantitative PCR assays to measure cytokine transcript levels in the Florida manatee (Trichechus manatus latirostris) Development and validation of quantitative PCR assays to measure cytokine transcript levels in the Florida manatee (Trichechus manatus latirostris)

Cytokines have important roles in the mammalian response to viral and bacterial infections, trauma, and wound healing. Because of early cytokine production after physiologic stresses, the regulation of messenger RNA (mRNA) transcripts can be used to assess immunologic responses before changes in protein production. To detect and assess early immune changes in endangered Florida manatees
Authors
Jason A. Ferrante, Margaret Hunter, James F.X. Wellehan

Development of a species status assessment process for decisions under the U.S. Endangered Species Act Development of a species status assessment process for decisions under the U.S. Endangered Species Act

Decisions under the U.S. Endangered Species Act (ESA) require scientific input on the risk that the species will become extinct. A series of critiques on the role of science in ESA decisions have called for improved consistency and transparency in species risk assessments and clear distinctions between science input and policy application. To address the critiques and document the...
Authors
David R. Smith, Nathan L. Allan, Conor P. McGowan, Jennifer A. Szymankski, Susan R. Oetker, Heather M. Bell
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