Publications
This list of publications includes peer-review journal articles, official USGS publications series, reports and more authored by scientists in the Ecosystems Mission Area. A database of all USGS publications, with advanced search features, can be accessed at the USGS Publications Warehouse.
Filter Total Items: 42735
Development and testing of species-specific quantitative PCR assays for environmental DNA applications Development and testing of species-specific quantitative PCR assays for environmental DNA applications
New, non-invasive methods for detecting and monitoring species presence are being developed to aid in fisheries and wildlife conservation management. The use of environmental DNA (eDNA) samples for detecting macrobiota is one such group of methods that is rapidly becoming popular and being implemented in national management programs. Here we focus on the development of species-specific...
Authors
Katy E. Klymus, Dannise Vannesa Ruiz-Ramos, Nathan Thompson, Catherine A. Richter
Assessing uranium and select trace elements associated with breccia pipe uranium deposits in the Colorado River and main tributaries in Grand Canyon, USA Assessing uranium and select trace elements associated with breccia pipe uranium deposits in the Colorado River and main tributaries in Grand Canyon, USA
Assessing chemical loading from streams in remote, difficult-to-access watersheds is challenging. The Grand Canyon area in northern Arizona, an international tourist destination and sacred place for many Native Americans, is characterized by broad plateaus divided by canyons as much as two-thousand meters deep and hosts some of the highest-grade uranium deposits in the U.S. From 2015...
Authors
Fred D. Tillman, Jessica R. Anderson, Joel A. Unema, Thomas Chapin
An assessment of the thiamine status of Smallmouth Bass (Micropterus dolomieu) in the Susquehanna River watershed An assessment of the thiamine status of Smallmouth Bass (Micropterus dolomieu) in the Susquehanna River watershed
Unpredictable recruitment and physical abnormalities (sores and lesions) have been observed in populations of Micropterus dolomieu (Smallmouth Bass) throughout the Susquehanna River basin. Malnutrition has been proposed as one of among several potential stressors, yet little to no information was available to critically assess its feasibility as a causal factor. We measured thiamine...
Authors
Daniel E. Spooner, Dale C. Honeyfield, Kristin Laura Boggs, Dustin R. Shull, Timothy Wertz, Stephanie Sweet
Ecology of urban climates: The need for landscape biophysics in cities Ecology of urban climates: The need for landscape biophysics in cities
In this chapter we will review and evaluate the climatic and ecological parallels between urbanization and climate change, with an emphasis on temperature and its effects on terrestrial ectotherms, a group of organisms thought to be particularly sensitive to climate change. We will summarize patterns of urban warming and how they relate to global climate change projections, then discuss...
Authors
Elsa Youngsteadt, Adam Terando
Skin fungal assemblages of bats vary based on susceptibility to white-nose syndrome Skin fungal assemblages of bats vary based on susceptibility to white-nose syndrome
Microbial skin assemblages, including fungal communities, can influence host resistance to infectious diseases. The diversity-invasibility hypothesis predicts that high-diversity communities are less easily invaded than species-poor communities, and thus diverse microbial communities may prevent pathogens from colonizing a host. To explore the hypothesis that host fungal communities...
Authors
Karen J Vanderwolf, Lewis Campbell, Tony L. Goldberg, David S. Blehert, Jeffrey M. Lorch
Evidence for an established population of tegu lizards Salvator merianae in southeastern Georgia, USA Evidence for an established population of tegu lizards Salvator merianae in southeastern Georgia, USA
Documenting emergence of invasive species in new areas is vital to understanding spatiotemporal patterns of invasions, propagule pressure, and the risk of establishment. Salvator merianae (Argentine Giant Tegu) has established multiple unconnected populations in southern and Central Florida, and additional sightings have been reported elsewhere in the state. In 2018, land managers in...
Authors
Daniel Haro, Lance McBrayer, John B Jenson, James Gillis, Lea R. Bonewell, Melia Gail Nafus, Stephen E. Greiman, Robert Reed, Amy A. Yackel Adams
Assessing ecological uncertainty and simulation model sensitivity to evaluate an invasive plant species’ potential impacts to the landscape Assessing ecological uncertainty and simulation model sensitivity to evaluate an invasive plant species’ potential impacts to the landscape
Ecological forecasts of the extent and impacts of invasive species can inform conservation management decisions. Such forecasts are hampered by ecological uncertainties associated with non-analog conditions resulting from the introduction of an invader to an ecosystem. We developed a state-and-transition simulation model tied to a fire behavior model to simulate the spread of buffelgrass...
Authors
Catherine S. Jarnevich, Nicholas E. Young, Catherine Cullinane Thomas, Perry Grissom, Dana M. Backer, Leonardo Frid
Hybridization alters growth and migratory life-history expression of native trout Hybridization alters growth and migratory life-history expression of native trout
Human-mediated hybridization threatens many native species, but the effects of introgressive hybridization on life-history expression are rarely quantified, especially in vertebrates. We quantified the effects of non-native rainbow trout admixture on important life-history traits including growth and partial migration behavior in three populations of westslope cutthroat trout over five...
Authors
Jeffrey Strait, Lisa A Eby, Ryan P. Kovach, Clint C. Muhlfeld, Matthew Boyer, Stephen J. Amish, Seth Smith, Winsor H. Lowe, Gordon Luikart
Effects of a crude-oil recovery remediation system operated 1999–2003 on groundwater plumes and unsaturated-zone vapor concentrations at a crude-oil spill site near Bemidji, Minnesota Effects of a crude-oil recovery remediation system operated 1999–2003 on groundwater plumes and unsaturated-zone vapor concentrations at a crude-oil spill site near Bemidji, Minnesota
A crude-oil spill occurred in 1979 when a pipeline burst near Bemidji, Minnesota. More than 70 percent of the 1.7 million liters of spilled crude oil was removed shortly thereafter. In response to a requirement by the State regulatory agency to remove the remaining crude to a sheen in all wells, in 1998, the pipeline company installed a dual-pump recovery system at the site. This...
Authors
Geoffrey N. Delin, William N. Herkelrath, Jared J. Trost
Effects of snake fungal disease on short‐term survival, behavior, and movement in free‐ranging snakes Effects of snake fungal disease on short‐term survival, behavior, and movement in free‐ranging snakes
Pathogenic fungi are increasingly associated with epidemics in wildlife populations. Snake fungal disease (SFD, also referred to as Ophidiomycosis) is an emerging threat to snakes, taxa that are elusive and difficult to sample. Thus, assessments of the effects of SFD on populations have rarely occurred. We used a field technique to enhance detection, Passive Integrated Transponder (PIT)...
Authors
Jennifer M. McKenzie, Steven J. Price, Grant M. Connette, Simon J Bonner, Jeffrey M. Lorch
A Bayesian Dirichlet process community occupancy model to estimate community structure and species similarity A Bayesian Dirichlet process community occupancy model to estimate community structure and species similarity
Community occupancy models estimate species‐specific parameters while sharing information across species by treating parameters as sampled from a common distribution. When communities consist of discrete groups, shrinkage of estimates towards the community mean can mask differences among groups. Infinite mixture models using a Dirichlet process (DP) distribution, in which the number of...
Authors
Rahel Sollmann, Mitchell J. Eaton, William Link, Paul Mulundo, Samuel Ayebare, Sarah Prinsloo, Andrew J. Plumptre, D.S. Johnson