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Publications

This list of publications includes peer-review journal articles, official USGS publications series, reports and more authored by scientists in the Ecosystems Mission Area. A database of all USGS publications, with advanced search features, can be accessed at the USGS Publications Warehouse.  

Filter Total Items: 42702

A need for speed in Bayesian population models: A practical guide to marginalizing and recovering discrete latent states A need for speed in Bayesian population models: A practical guide to marginalizing and recovering discrete latent states

Bayesian population models can be exceedingly slow due, in part, to the choice to simulate discrete latent states. Here, we discuss an alternative approach to discrete latent states, marginalization, that forms the basis of maximum likelihood population models and is much faster. Our manuscript has two goals: 1) to introduce readers unfamiliar with marginalization to the concept and...
Authors
Charles B. Yackulic, Michael J. Dodrill, Maria C. Dzul, Jamie S. Sanderlin, Janice A. Reid

Application of airborne LiDAR and GIS in modeling trail erosion along the Appalachian Trail, New Hampshire, USA Application of airborne LiDAR and GIS in modeling trail erosion along the Appalachian Trail, New Hampshire, USA

Recreational activities can negatively affect protected area landscapes and resources and soil erosion is frequently cited as the most significant long-term impact to recreational trails. Comprehensive modeling of soil loss on trails can identify influential factors that managers can manipulate to design and manage more sustainable trails. Field measurements assessed soil loss as the...
Authors
Holly Eagleston, Jeffrey L. Marion

Spatial epidemiological patterns suggest mechanisms of land-sea transmission for Sarcocystis neurona in a coastal marine mammal Spatial epidemiological patterns suggest mechanisms of land-sea transmission for Sarcocystis neurona in a coastal marine mammal

Sarcocystis neurona was recognised as an important cause of mortality in southern sea otters (Enhydra lutris nereis) after an outbreak in April 2004 and has since been detected in many marine mammal species in the Northeast Pacific Ocean. Risk of S. neurona exposure in sea otters is associated with consumption of clams and soft-sediment prey and is temporally associated with runoff...
Authors
Tristan Burgess, M. Tim Tinker, Melissa A. Miller, Woutrina A. Smith, James L. Bodkin, Michael J. Murray, Linda M. Nichol, Justin A. Saarinen, Shawn E. Larson, Joseph A. Tomoleoni, Patricia A. Conrad, Christine K. Johnson

Co-producing knowledge: The Integrated Ecosystem Model for resource management in Arctic Alaska Co-producing knowledge: The Integrated Ecosystem Model for resource management in Arctic Alaska

Assessments of climate-change effects on ecosystem processes and services in high-latitude regions are hindered by a lack of decision-support tools capable of forecasting possible future landscapes. We describe a collaborative effort to develop and apply the Integrated Ecosystem Model (IEM) for Alaska and northwestern Canada to explore how climate change influences interactions among...
Authors
Eugenie S. Euskirchen, Kristin Timm, Amy L. Breen, Stephen Gray, T. Scott Rupp, Philip Martin, Joel H. Reynolds, Amanda Sesser, Karen Murphy, Jeremy Littell, Alec Bennett, W. Robert Bolton, Tobey Carman, Helene Genet, Brad Griffith, Tom Kurkowski, Mark J. Lara, Sergei Marchenko, Dmitry Nicolsky, Panda Santosh, Vladimir Romanovsky, Ruth Rutter, Colin Tucker, A. David McGuire

Egg counts of Southern Leopard Frog, Lithobates sphenocephalus, egg masses from southern Louisiana, USA Egg counts of Southern Leopard Frog, Lithobates sphenocephalus, egg masses from southern Louisiana, USA

Southern Leopard Frogs, Lithobates sphenocephalus (Cope, 1889), lay eggs year-round in their southern range, including Louisiana, but their peak breeding season is the cooler months from late fall through early spring (Mount, 1975; Caldwell, 1986; Dundee and Rossman, 1989). Double-enveloped eggs in globular masses are typically deposited in shallow water, but deeper waters are used when
Authors
Brad M. Glorioso, Lindy J. Muse, J. Hardin Waddle

Food and temperature stressors have opposing effects in determining flexible migration decisions in brown trout (Salmo trutta ) Food and temperature stressors have opposing effects in determining flexible migration decisions in brown trout (Salmo trutta )

With rapid global change, organisms in natural systems are exposed to a multitude of stressors that likely co‐occur, with uncertain impacts. We explored individual and cumulative effects of co‐occurring environmental stressors on the striking, yet poorly understood, phenomenon of facultative migration. We reared offspring of a brown trout population that naturally demonstrates...
Authors
Louise C Archer, Stephen A. Hutton, Luke Harman, Stephen D. McCormick, Michael N O’Grady, Joseph P. Kerry, W Russel Poole, Patrick Gargan, Philip McGinnity, Thomas E Reed

Increased prespawning mortality threatens an integrated natural- and hatchery-origin sockeye salmon population in the Lake Washington Basin Increased prespawning mortality threatens an integrated natural- and hatchery-origin sockeye salmon population in the Lake Washington Basin

The life cycle of diadromous fishes such as salmonids involves natural mortality in a series of distinct life history stages, occurring sequentially in different habitats. Decades of research have emphasized mortality at the embryo, juvenile, and sub-adult stages but it is increasingly clear that some adults that survive and return to freshwater habitats die during the final homeward...
Authors
Heidy K Barnett, Thomas P. Quinn, Mary Bhuthimethee, James Winton

Evidence for a growing population of eastern migratory monarch butterflies is currently insufficient Evidence for a growing population of eastern migratory monarch butterflies is currently insufficient

The eastern migratory population of monarch butterflies has experienced a multi-decadal decline, but a recent increase in abundance (to 6.05 ha in winter 2018) has led some observers to question whether the population has reversed its long-standing decline and embarked on a trajectory of increasing abundance. We examined this possibility through changepoint analyses, first assessing...
Authors
Wayne E. Thogmartin, Jennifer A Szymanski, Emily L. Weiser

Non-freezing cold event stresses can cause significant damage to mangrove seedlings: Assessing the role of warming and nitrogen enrichment in a mesocosm study Non-freezing cold event stresses can cause significant damage to mangrove seedlings: Assessing the role of warming and nitrogen enrichment in a mesocosm study

Mangroves are expanding poleward along coastlines globally as a response to rising temperatures and reduced incidence of freezing under climate change. Yet, knowledge of mangrove responses to infrequent cold events in the context of future global and regional environmental changes is limited. We initiated a mesocosm experiment in which the seedlings of two mangrove species were grown...
Authors
Weimin Song, Jianxiang Feng, Ken W. Krauss, Yan Zhao, Zhonglei Wang, Yiqi Luo, Guanghui Lin

Spatial and temporal patterns in age structure of Golden Eagles wintering in eastern North America Spatial and temporal patterns in age structure of Golden Eagles wintering in eastern North America

The behavior of wildlife varies seasonally, and that variation can have substantial demographic consequences. This is especially true for long‐distance migrants where the use of landscapes varies by season and, sometimes, age cohort. We tested the hypothesis that distributional patterns of Golden Eagles (Aquila chrysaetos) wintering in eastern North America are age‐structured (i.e...
Authors
Macy L Kenney, James R. Belthoff, Matthew Carling, Tricia A. Miller, Todd E. Katzner

How repeatable is CTmax within individual brook trout over short- and long-time intervals? How repeatable is CTmax within individual brook trout over short- and long-time intervals?

As stream temperatures increase due to factors such as heated runoff from impervious surfaces, deforestation, and climate change, fish species adapted to cold water streams are forced to move to more suitable habitat, acclimate or adapt to increased thermal regimes, or die. To estimate the potential for adaptation, a (within individual) repeatable metric of thermal tolerance is...
Authors
Matthew J. O’Donnell, Amy M. Regish, Stephen D. McCormick, Benjamin H. Letcher

Multi‐species occupancy models: Review, roadmap, and recommendations Multi‐species occupancy models: Review, roadmap, and recommendations

Recent technological and methodological advances have revolutionized wildlife monitoring. Although most biodiversity monitoring initiatives are geared towards focal species of conservation concern, researchers are increasingly studying entire communities, specifically the spatiotemporal drivers of community size and structure and interactions among species. This has resulted in the...
Authors
Kadambari Devarajan, Simone Tenan, Toni Lyn Morelli
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