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Browse more than 65,000 articles authored by our scientists over the past 100+ year history of the USGS and refine search by topic, location, year, and advanced search.

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Disruption of the Francisella noatunensis orientalis pdpA gene results in virulence attenuation and protection in zebrafish Disruption of the Francisella noatunensis orientalis pdpA gene results in virulence attenuation and protection in zebrafish

Several Francisella spp. including F. noatunensis are regarded as important emerging pathogens of wild and farmed fish. However, very few studies have investigated the virulence factors that allow these bacterial species to be pathogenic in fish. The Francisella Pathogenicity Island (FPI) is a well-described, gene-dense region encoding major virulence factors for the genus Francisella...
Authors
John D. Hansen, Karina Ray, Po-Jui Chen, Susan Yun, Diane G. Elliott, Carla M. Conway, Michael Culcutt, Maureen K. Purcell, Timothy J Welch, John Patrick Bellah, Ellie Maureen Dalsky, Justin Blaine Greer, Esteban Soto

Amphibian population responses to mitigation: Relative importance of wetland age and design Amphibian population responses to mitigation: Relative importance of wetland age and design

Wetland creation is a common practice to mitigate for the loss of natural wetlands. However, there is still uncertainty about how effectively created wetlands replace habitat provided by natural wetlands. This uncertainty is due in part because post-construction monitoring of biological communities, and vertebrates especially, is rare and typically short-term (
Authors
Emily Bea Oja, Leah S Swartz, Erin L. Muths, Blake R. Hossack

Connecting regional-scale tree distribution models with seed dispersal kernels Connecting regional-scale tree distribution models with seed dispersal kernels

Regional scale forest distribution models are important tools for biogeography and understanding the structure of forest communities in space. These models take climate and geographic variables as input and are therefore helpful for long-term decision support and climate adaptation planning. Generally, local processes of tree germination and seedling survival are resolved...
Authors
Ram C. Neupane, James A. Powell, Thomas C. Edwards

Wetland selection by female Ring-Necked Ducks (Aythya collaris) in the Southern Atlantic Flyway Wetland selection by female Ring-Necked Ducks (Aythya collaris) in the Southern Atlantic Flyway

On the wintering grounds, wetland selection by waterfowl is influenced by spatiotemporal resource distribution. The ring-necked duck (Aythya collaris) winters in the southeastern United States where a disproportionate amount of Atlantic Flyway ring-necked duck harvest occurs. We quantified female ring-necked duck selection for wetland characteristics during and after the 2017-2018 and...
Authors
Tori D. Mezebish, Richard B. Chandler, Glenn H. Olsen, Michele Goodman, Frank C. Rohwer, Nicholas J. Meng

Large California wildfires: 2020 fires in historical context Large California wildfires: 2020 fires in historical context

Background California in the year 2020 experienced a record breaking number of large fires. Here, we place this and other recent years in a historical context by examining records of large fire events in the state back to 1860. Since drought is commonly associated with large fire events, we investigated the relationship of large fire events to droughts over this 160 years period.Results...
Authors
Jon Keeley, Alexandra D. Syphard

Solutions in microbiome engineering: Prioritizing barriers to organism establishment Solutions in microbiome engineering: Prioritizing barriers to organism establishment

Microbiome engineering is increasingly being employed as a solution to challenges in health, agriculture, and climate. Often manipulation involves inoculation of new microbes designed to improve function into a preexisting microbial community. Despite, increased efforts in microbiome engineering inoculants frequently fail to establish and/or confer long-lasting modifications on ecosystem...
Authors
Michaeline B.N. Albright, Stilianos Louca, Daniel E. Winkler, Kelli L. Feeser, Sarah-Jane Haig, Katrine L. Whiteson, Joanne B. Emerson, John M. Dunbar

Evaluating the state-of-the-art in remote volcanic eruption characterization Part II: Ulawun volcano, Papua New Guinea Evaluating the state-of-the-art in remote volcanic eruption characterization Part II: Ulawun volcano, Papua New Guinea

Retrospective eruption characterization is valuable for advancing our understanding of volcanic systems and evaluating our observational capabilities, especially with remote technologies (defined here as a space-borne system or non-local, ground-based instrumentation which include regional and remote infrasound sensors). In June 2019, the open-system Ulawun volcano, Papua New Guinea...
Authors
Kathleen McKee, Cassandra Marie Smith, Kevin Reath, Eveanjelene Snee, Sean Maher, Robin S. Matoza, Simon A Carn, Diana Roman, Larry G. Mastin, Kyle R. Anderson, David Damby, Ima Itikarai, Kila Mulina, Steve Saunders, Jelle D. Assink, Rodrigo de Negri Levia, Anna Perttu

Cohesive sediment modeling in a shallow estuary: Model and environmental implications of sediment parameter variation Cohesive sediment modeling in a shallow estuary: Model and environmental implications of sediment parameter variation

Numerical models of sediment transport in estuarine systems rely on parameter values that are often poorly constrained and can vary on timescales relevant to model processes. The selection of parameter values can affect the accuracy of model predictions, while environmental variation of these parameters can impact the temporal and spatial ranges of sediment fluxes, erosion, and...
Authors
Rachel Allen, Jessica R. Lacy, Andrew W. Stevens

Assessing the ecological functionality and integrity of natural ponds, excavated ponds and stormwater basins for conserving amphibian diversity Assessing the ecological functionality and integrity of natural ponds, excavated ponds and stormwater basins for conserving amphibian diversity

Wetlands provide ecological functionality by maintaining and promoting regional biodiversity supporting quality habitat for aquatic organisms. Globally, habitat loss, fragmentation and degradation due to increases in agricultural activities and urban development have reduced or altered geographically isolated wetlands, thus reducing biodiversity. The objective of this study was to assess...
Authors
Kelly L. Smalling, Sara E. Breitmeyer, John F. Bunnell, Kim J Laidig, Patrick Burritt, Marilyn Sobel, Jonathan Cohl, Michelle L. Hladik, Kristin M. Romanok, Paul M. Bradley

Mg/Ca ratios in ostracode genera Sarsicytheridea and Paracyprideis: A potential paleotemperature proxy for Arctic and subarctic continental shelf and slope waters Mg/Ca ratios in ostracode genera Sarsicytheridea and Paracyprideis: A potential paleotemperature proxy for Arctic and subarctic continental shelf and slope waters

We evaluate the potential utility of Mg/Ca ratios in the sublittoral ostracode genera Sarsicytheridea and Paracyprideis as a paleotemperature proxy for continental shelf and upper slope waters of the Arctic Ocean and adjacent seas. Using sediment core-top and surface sediment samples, the shells of three species, S. bradii, S. punctillata, and P. pseudopunctillata, were analyzed from...
Authors
Thomas M. Cronin, Gary S. Dwyer, Katherine Keller, Laura Gemery, Jesse R. Farmer

Latest Quaternary slip rates of the San Bernardino strand of the San Andreas fault, southern California, from Cajon Creek to Badger Canyon Latest Quaternary slip rates of the San Bernardino strand of the San Andreas fault, southern California, from Cajon Creek to Badger Canyon

Four new latest Pleistocene slip rates from two sites along the northwestern half of the San Bernardino strand of the San Andreas fault suggest the slip rate decreases southeastward as slip transfers from the Mojave section of the San Andreas fault onto the northern San Jacinto fault zone. At Badger Canyon, offsets coupled with radiocarbon and optically stimulated luminescence (OSL) ages...
Authors
Sally F. McGill, Lewis A. Owen, Ray J. Weldon, Katherine J. Kendrick, Reed J. Burgette
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