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Publications

This list of publications includes peer-review journal articles, official USGS publications series, reports and more authored by scientists in the Ecosystems Mission Area. A database of all USGS publications, with advanced search features, can be accessed at the USGS Publications Warehouse.  

Filter Total Items: 42700

Embryonic effects of an environmentally relevant PCB mixture in the domestic chicken Embryonic effects of an environmentally relevant PCB mixture in the domestic chicken

Studies were conducted to develop methods to assess the effects of a complex mixture of polychlorinated biphenyls (PCBs) in the domestic chicken (Gallus domesticus). Treatments were administered by egg injection to compare embryonic effects of an environmentally relevant PCB congener mixture in the domestic chicken over a range of doses. Chicken eggs were injected with the PCB mixture...
Authors
Mary Ann Ottinger, Emma T. Lavoie, Mary E. B. Bohannon, Allegra M. Marcel, Anna E. Tschiffely, Kara B. Duffy, Moira A. McKernan, Nichola Thompson, H. Kasen Whitehouse, Kimya Davani, Marci Strauss, Donald E. Tillitt, Joshua Lipton, Karen M. Dean

Chronic toxicity of 4-nonylphenol to two unionid mussels in water-only exposures Chronic toxicity of 4-nonylphenol to two unionid mussels in water-only exposures

Limited studies indicate that mussels are generally insensitive to organic chemicals; however, these studies were conducted in acute or short-term exposures, and little is known about the chronic sensitivity of mussels to organic chemicals. We evaluated the chronic (28 days) toxicity of 4-nonylphenol (4-NP) to two commonly tested species of mussels: fatmucket (Lampsilis siliquoidea) and...
Authors
Chris D. Ivey, Ning Wang, David Alvarez, Edward J. Hammer, Candice R. Bauer

Wrangling distributed computing for high-throughput environmental science: An introduction to HTCondor Wrangling distributed computing for high-throughput environmental science: An introduction to HTCondor

Biologists and environmental scientists now routinely solve computational problems that were unimaginable a generation ago. Examples include processing geospatial data, analyzing -omics data, and running large-scale simulations. Conventional desktop computing cannot handle these tasks when they are large, and high-performance computing is not always available nor the most appropriate...
Authors
Richard A. Erickson, Michael N. Fienen, S. Grace McCalla, Emily L. Weiser, Melvin L. Bower, Jonathan M. Knudson, Greg Thain

Regional patterns in the geochemistry of oil-field water, southern San Joaquin Valley, California, USA Regional patterns in the geochemistry of oil-field water, southern San Joaquin Valley, California, USA

Chemical and isotopic data for water co-extracted with hydrocarbons in oil and gas fields are commonly used to examine the source of the formation water and possible impacts on groundwater in areas of oil and gas development. Understanding the geochemical variability of oil-field water could help to evaluate its origin and delineate possible contamination of shallow aquifers in cases...
Authors
Peter B. McMahon, Justin T. Kulongoski, Avner Vengosh, Isabelle M. Cozzarelli, Matthew K. Landon, Yousif K. Kharaka, Janice M. Gillespie, Tracy Davis

Relationships between landscape constraints and a crayfish assemblage with consideration of competitor presence Relationships between landscape constraints and a crayfish assemblage with consideration of competitor presence

Aim Crayfish are globally diverse and one of the most important taxa in North American streams. Despite their importance, many species are of conservation concern and efforts to improve conditions are limited. Here, we address two major impediments to improving conditions: (a) our lack of knowledge of the interplay among natural landscape and human-induced changes; and (b) a very limited
Authors
J.B. Mouser, Robert Mollenhauer, Shannon K. Brewer

History and dynamics of the Greater Yellowstone Glacial System during the last two glaciations History and dynamics of the Greater Yellowstone Glacial System during the last two glaciations

The Greater Yellowstone Glacial System (GYGS) covered about 20,000 km2 at its maximum Pleistocene extent. The initiation, culmination, and ultimate decay of the GYGS involved complex interactions between several coalescent ice masses flowing from glacial source areas adjoining and including the Yellowstone Plateau. Here, we present an updated review of the history and dynamics of the...
Authors
Joseph M. Licciardi, Kenneth L. Pierce

Fuels guide and database for intact and invaded big sagebrush (Artemisia tridentata) ecological sites—User manual Fuels guide and database for intact and invaded big sagebrush (Artemisia tridentata) ecological sites—User manual

The Fuels Guide and Database (FGD) is intended to provide fuel loading and vegetation information for big sagebrush (Artemisia tridentata) ecological sites in the Morley Nelson Snake River Birds of Prey National Conservation Area (hereinafter the NCA) in southern Idaho. Sagebrush ecosystems in the NCA and throughout much of the Great Basin are highly influenced by non-native plants that...
Authors
Douglas J. Shinneman, Justin L. Welty, Robert S. Arkle, David S. Pilliod, Nancy F. Glenn, Susan K. McIlroy, Anne S. Halford

2018 hurricane and wildfire supplemental funding: USGS recovery activities 2018 hurricane and wildfire supplemental funding: USGS recovery activities

The Additional Supplemental Appropriations for Disaster Relief Requirements Act, 2018 (P.L. 115-123), was signed by the President on February 9, 2018. This funding provided $42.2 million to the U.S. Geological Survey (USGS) for equipment repair and replacement, high-resolution elevation data collection in both hurricane- and wildfire-impacted areas, and scientific studies and assessments...
Authors
Jo Ellen Hinck, Joseph Stachyra

Detecting southern California’s white sharks with environmental DNA Detecting southern California’s white sharks with environmental DNA

To improve ability to detect white sharks without the need for tags, or visual census, we developed a species-specific environmental DNA (eDNA) assay that targets a 163 bp fragment of the white shark (Carcharodon carcharias) mitochondrial cytochrome B gene on a digital droplet PCR (ddPCR) platform. We used this marker to detect white shark DNA in 250 ml water samples taken from across...
Authors
Kevin D. Lafferty, Kasey C. Benesh, Andrew R. Mahon, Christopher L. Jerde, Christopher G. Lowe

Mortality of little brown bats (Myotis lucifugus carissima) naturally exposed to microcystin-LR Mortality of little brown bats (Myotis lucifugus carissima) naturally exposed to microcystin-LR

We describe a die-off of little brown bats (Myotis lucifugus carissima) associated with acute intoxication with microcystin-LR in 2016 at Scofield Reservoir in Utah. High levels of this cyanotoxin in water from the reservoir and gastrointestinal content of bats supported this diagnosis.
Authors
Marcos Isidoro Ayza, Lee C. Jones, Robert J. Dusek, Jeffrey M. Lorch, Jan H. Landsberg, Patrick Wilson, Stephanie Graham

Climate Assessments and Scenario Planning (CLASP) Climate Assessments and Scenario Planning (CLASP)

The NE CASC boasts an interdisciplinary array of scientists, from ecologists to biologists, hydrologists to climatologists, each contributing new, original academic research to advance our understanding of the impacts of climate change on wildlife and other natural resources in the Northeast. Needed was an outreach specialist who would interface directly with the management agencies who...
Authors
Alexander Bryan

In vivo effects of 17α-ethinylestradiol, 17B-estradiol and 4-nonylphenol on insulin-like growth-factor binding proteins (igfbps) in Atlantic salmon In vivo effects of 17α-ethinylestradiol, 17B-estradiol and 4-nonylphenol on insulin-like growth-factor binding proteins (igfbps) in Atlantic salmon

Feminizing endocrine disrupting compounds (EDCs) affect the growth and development of teleost fishes. The major regulator of growth performance, the growth hormone (Gh)/insulin-like growth-factor (Igf) system, is sensitive to estrogenic compounds and mediates certain physiological and potentially behavioral consequences of EDC exposure. Igf binding proteins (Igfbps) are key modulators of...
Authors
Jason P. Breves, Tara A. Duffy, Ingibjorg E. Einarsdottir, Bjorn Thrandur Bjornsson, Stephen D. McCormick
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